Breed/Population Samples G2P Pair Model Description Author Journal Year PMID
An F2 intercross population from Huiyang Bearded chickens and High Quality of Chicken Line A 585 1 linear mixed model (LMM) A Complex Structural Variation on Chromosome 27 Leads to the Ectopic Expression of HOXB8 and the Muffs and Beard Phenotype in Chickens Xiaoxiang Hu et al. PLoS Genet 2016 27253709
Beijing-You population  724 1 linear mixed model (LMM) A Complex Structural Variation on Chromosome 27 Leads to the Ectopic Expression of HOXB8 and the Muffs and Beard Phenotype in Chickens Xiaoxiang Hu et al. PLoS Genet 2016 27253709
An F2 resource population from White Leghorn and Chinese Dongxiang Blue-Shelled chickens 1512 592 genome-wide efficient mixed model association (GEMMA) Genome-Wide Association Studies for Comb Traits in Chickens Kehua Wang et al. PLoS One 2016 27427764
Male Chinese native dwarf yellow chicken 265 40 Generalized linear mixed model(GLMM) Genome-wide association study of aggressive behaviour in chicken Qinghua Nie et al. Sci Rep 2016 27485826
Adult females Rhode Island Red chicken 78 437 Basic case/control association analysis according to the manual of PLINK (v1.09) Genome-wide association study revealed genomic regions related to white/red earlobe color trait in the Rhode Island Red chickens Lujiang Qu et al. BMC Genet 2016 27496128
Yellow-plumage dwarf chicken line N301 426 32 A general linear mixed model(GLM) Combination analysis of genome-wide association and transcriptome sequencing of residual feed intake in quality chickens Xiquan Zhang et al. BMC Genomics 2016 27506765
Jarso chickens 376 59 genome-wide efficient mixed model association (GEMMA) Genome-wide association studies of immune, disease and production traits in indigenous chicken ecotypes Androniki Psiidi et al. Genet Sel Evol 2016 27687164
Horro chickens 384 31 genome-wide efficient mixed model association (GEMMA) Genome-wide association studies of immune, disease and production traits in indigenous chicken ecotypes Androniki Psiidi et al. Genet Sel Evol 2016 27687164
Cornell randombred White Leghorn population 96 5 a standard linear model including the fixed effects of sex and the additive effects of the highly differ-entiated markers Genome-wide standing variation facilitates long-term response to bidirectional selection for antibody response in chickens Mette Lillie et al. BMC Genomics 2017 28100171
Beijing fatty chicken 112 10 mixed linear model Genetic pattern and gene localization of polydactyly in Beijing fatty chicken He Meng et. al. Plos One 2017 28489934
Jinghai Yellow Chicken 396 17 general linear regression model(GLM) Identification of 19 loci for reproductive traits in a local Chinese chicken by genome-wide study J.Y. Wang et. al. Genet Mol Res. 2017 28340264
layer chickens 1534 11 linear mixed model Genetic architecture of bone quality variation in layer chickens revealed by a genome-wide association study Ning Yang et.al. Scientific Reports 2017 28383518
Yukou Brown I hens 204 13 Basic case/control association test Genome-wide association analysis identifies potential regulatory genes for eumelanin pigmentation in chicken plumage. Shijun. Li et. al. Anim Genetics 2017 28100171