Breed/Population Samples G2P Pair Model Description Author Journal Year PMID
An F2 intercross population from Huiyang Bearded chickens and High Quality of Chicken Line A 585 1 linear mixed model (LMM) A Complex Structural Variation on Chromosome 27 Leads to the Ectopic Expression of HOXB8 and the Muffs and Beard Phenotype in Chickens Xiaoxiang Hu et al. PLoS Genet 2016 27253709
Beijing-You population  724 1 linear mixed model (LMM) A Complex Structural Variation on Chromosome 27 Leads to the Ectopic Expression of HOXB8 and the Muffs and Beard Phenotype in Chickens Xiaoxiang Hu et al. PLoS Genet 2016 27253709
An F2 resource population from White Leghorn and Chinese Dongxiang Blue-Shelled chickens 1512 592 genome-wide efficient mixed model association (GEMMA) Genome-Wide Association Studies for Comb Traits in Chickens Kehua Wang et al. PLoS One 2016 27427764
Male Chinese native dwarf yellow chicken 265 40 Generalized linear mixed model(GLMM) Genome-wide association study of aggressive behaviour in chicken Qinghua Nie et al. Sci Rep 2016 27485826
Adult females Rhode Island Red chicken 78 437 Basic case/control association analysis according to the manual of PLINK (v1.09) Genome-wide association study revealed genomic regions related to white/red earlobe color trait in the Rhode Island Red chickens Lujiang Qu et al. BMC Genet 2016 27496128
Yellow-plumage dwarf chicken line N301 426 32 A general linear mixed model(GLM) Combination analysis of genome-wide association and transcriptome sequencing of residual feed intake in quality chickens Xiquan Zhang et al. BMC Genomics 2016 27506765
Jarso chickens 376 59 genome-wide efficient mixed model association (GEMMA) Genome-wide association studies of immune, disease and production traits in indigenous chicken ecotypes Androniki Psiidi et al. Genet Sel Evol 2016 27687164
Horro chickens 384 31 genome-wide efficient mixed model association (GEMMA) Genome-wide association studies of immune, disease and production traits in indigenous chicken ecotypes Androniki Psiidi et al. Genet Sel Evol 2016 27687164
Cornell randombred White Leghorn population 96 5 a standard linear model including the fixed effects of sex and the additive effects of the highly differ-entiated markers Genome-wide standing variation facilitates long-term response to bidirectional selection for antibody response in chickens Mette Lillie et al. BMC Genomics 2017 28100171
Beijing fatty chicken 112 10 mixed linear model Genetic pattern and gene localization of polydactyly in Beijing fatty chicken He Meng et. al. Plos One 2017 28489934
Jinghai Yellow Chicken 396 17 general linear regression model(GLM) Identification of 19 loci for reproductive traits in a local Chinese chicken by genome-wide study J.Y. Wang et. al. Genet Mol Res. 2017 28340264
layer chickens 1534 11 linear mixed model Genetic architecture of bone quality variation in layer chickens revealed by a genome-wide association study Ning Yang et.al. Scientific Reports 2017 28383518
Yukou Brown I hens 204 13 Basic case/control association test Genome-wide association analysis identifies potential regulatory genes for eumelanin pigmentation in chicken plumage. Shijun. Li et. al. Anim Genetics 2017 28100171
broiler chicken 1430 4 Bayesian approach A genome-wide association study reveals novel genomic regions and positional candidate genes for fat deposition in broiler chickens Gabriel Costa Monteiro Moreira et. al. BMC Genomics 2018 29783939
Tibetan chicken 136 4 Bayesian approach Genome-wide association analysis reveals novel loci for hypoxia adaptability in Tibetan chicken Jiang SY et. al. Animal Genetics 2018 29774577
Perdicinae (Japanese quail), Meleagridinae (turkey), Phasianinae (chicken) 31 2 linear mixed model Population genomic data reveal genes related to important traits of quail Yan Wu et. al. GigaScience 2018 29762663
White Leghorn line  960 10 linear model based on the Poisson distribution  A genome-wide association study in a large F2-cross of laying hens reveals novel genomic regions associated with feather pecking and aggressive pecking behavior Vanessa Lutz et al. Genetics Selection Evolution 2017 28158968
 broiler chickens 464 21 mixed linear model (MLM) Genome-wide association study for performance traits in chickens using genotype by sequencing approach Luiz Lehmann Coutinho et al. Scientific Reports 2017 28181508
 broiler chickens 475 26  using the linear regression analysis method in PLINK and mixed-model statistical packages TCF21 is related to testis growth and development in broiler chickens Zhiwu Zhang et al. Genetics Selection Evolution 2017 28235410
A F2 population of a commercial broiler line and an Iranian indigenous chicken breed 198 2 Mixed linear model  Genome‐wide association study of cell‐mediated immune response in chicken A. Ehsani et al. Journal of Animal Breeding and Genetics 2017 28295717
 an F2 of a Chinese indigenous breed with blue eggs and a White leghorn flock 1534 10  linear mixed model  Genetic architecture of bone quality variation in layer chickens revealed by a genome-wide association study Ning Yang et al. Scientific Reports 2017 28383518
Rhode Island Red chickens 808 3 a mixed models approach implemented in the GEMMA software package Genome-wide association study reveals putative role of gga-miR-15a in controlling feed conversion ratio in layer chickens Congjiao Sun et al. BMC Genomics 2017 28877683
White Leghorn chicken and the Dongxiang Blue-shelled Chicken 1456 32 genome-wide efficient mixed-model association (GEMMA) and the Bayesian methods  Genetic Architecture and Candidate Genes Identified for Follicle Number in Chicken NingYang et al. Scientific Reports 2017 29180824
F2 inter-cross between  broiler male Arian line and Iranian indigenous fowl 312 2 a spline regression model Genomic dissection and prediction of feed intake and residual feed intake traits using a longitudinal model in F2 chickens R. Vaez Torshizi et al. animal 2017 29268803
F2 from a cross bettween White Leghorn chicken and the Dongxiang Blue-shelled Chicken 639 134 the GEMMA v0.94  A genome-wide study to identify genes responsible for oviduct development in chickens NingYang et al. PLOS ONE 2017 29281706