Model G2P Pair Description Author Journal Year PMID
2-stage logistic regression 41 Short communication: Uncovering quantitative trait loci associated with resistance to Mycobacterium avium ssp. paratuberculosis infection in Holstein cattle using a high-density single nucleotide polymorphism panel. S. D. Pant et al. Journal of dairy science 2018 29753465
missing 81 Dissecting closely linked association signals in combination with the mammalian phenotype database can identify candidate genes in dairy cattle. Zexi Cai et al. BMC genetics 2018 29751743
a linear mixed model 3 A genome-wide association study for fat-related traits computed by image analysis in Japanese Black cattle. Shinji SASAZAKI et al. Animal science journal  2018 29380492
a linear mixed model 22 Association analysis for udder index and milking speed with imputed whole-genome sequence variants in Nordic Holstein cattle. Goutam Sahana et al. Journal of dairy science 2018 29274975
The EMMAX-GRM general mixed model  21 Loci and pathways associated with uterine capacity for pregnancy and fertility in beef cattle. Holly L. Neibergs et al. PloS one 2017 29228019
a mixed linear model 64 A genome-wide association study for left-sided displacement of the abomasum using a high-density single nucleotide polymorphism array. O. Distl et al. Journal of dairy science 2018 29224884
a mixed linear model 14 Maternal variant in the upstream of FOXP3 gene on the X chromosome is associated with recurrent infertility in Japanese Black cattle. Shinji Sasaki et al. BMC genetics 2017 29212449
The efficient mixed model association (EMMAX) approach 35 Network Analysis Reveals Putative Genes Affecting Meat Quality in Angus Cattle. Raluca G. Mateescu   et al. Frontiers in genetics 2017 29163638
a single‑SNP mixed linear model  142 Genome-wide association studies and genomic prediction of breeding values for calving performance and body conformation traits in Holstein cattle. Flavio S. Schenkel et al. Genetics, selection, evolution : GSE 2017 29115939
a fixed-effect linear model / a mixedeffect linear model 56 A genome-wide association study suggests new candidate genes for milk production traits in Chinese Holstein cattle. K. R. Shi  et al. Animal genetics 2017 28857209
a linear mixed model analysis (MMA) 74 Genome-wide Association Studies for Female Fertility Traits in Chinese and Nordic Holsteins. Yachun Wang et al. Scientific reports 2017 28814769
efficient mixed-model association expedited/linear mixed model 40 Association analysis for young stock survival index with imputed whole-genome sequence variants in Nordic Holstein cattle. Goutam Sahana et al. Journal of dairy science 2017 28551195
The Fixed and random model Circuitous Probability Unification (FarmCPU) model 36 Genome-wide association studies identified multiple genetic loci for body size at four growth stages in Chinese Holstein cattle. Yachun Wang et al. PloS one 2017 28426785
least squares regression 8 Genome-wide association analysis of body conformation traits in Mexican Holstein cattle using a mix of sampled and imputed SNP genotypes. M.E. González et al. Genetics and molecular research : GMR 2017 28407191
an additional efficient mixed-model association eXpedited (EMMAX) analysis 23 Identification of loci associated with susceptibility to Mycobacterium avium subspecies paratuberculosis (Map) tissue infection in cattle J. N. Kiser et al. Journal of animal science 2017 28380509
a mixed linear model 3 Single nucleotide polymorphisms in the bovine MHC region of Japanese Black cattle are associated with bovine leukemia virus proviral load. Yoko Aida et al. Retrovirology 2017 28376881
two-step linear regression model 43 Integrating Sequence-based GWAS and RNA-Seq Provides Novel Insights into the Genetic Basis of Mastitis and Milk Production in Dairy Cattle. Lingzhao Fang et al. Scientific reports 2017 28358110
compressed mixed linear model (CMLM) 13 Searching for new loci and candidate genes for economically important traits through gene-based association analysis of Simmental cattle. JiangweiXia et al. Scientific reports 2017 28169328