Experiment information
Accession CRX017967
Organism Homo sapiens
Title human sperm Hi-C R2
BioProject PRJCA000241
BioSample SAMC013103
Platform Illumina HiSeq X Ten
Library
Library name Construction protocol Strategy Source Selection Layout
human sperm Hi-C R2 subsequent analysis. We generated raw contact matrix at the binning resolution of 40 Kb, 100 Kb, and 250 Kb. The ICE (Dixon et al., 2012) normalization is applied to remove the bias in the raw matrix using the ICE implement in HiTC with parameters (--sparse. filter 0.02) (Servant et al., 2012). OTHER GENOMIC unspecified PAIRED
Processing Planned read length (bp) for mate 1: 150
Planned read length (bp) for mate 2: 150
Release date2017-07-13
Run
Run accession Run data file information
File nameFile size (MB)
CRR019674 CRD039116
CRD039117
CRD039120
CRD039121
CRD039122
CRD039123
3,719.89
4,217.78
17,384.38
20,090.09
18,683.08
21,680.53
SubmitterXuepeng Chen (chenxp@big.ac.cn)
OrganizationBeijing Institute of Genomics, Chinese Academy of Sciences
Date submitted2017-05-26