| Accession | CRX017965 |
| Organism | Mus musculus |
| Title | 2-cell (aphidicolin treated) Hi-C R1 |
| BioProject | PRJCA000241 |
| BioSample | SAMC013102 |
| Platform | Illumina HiSeq 2500 |
| Library |
| Library name |
Construction protocol |
Strategy |
Source |
Selection |
Layout |
| Aphidicolin treated 2-cell |
subsequent analysis. We generated raw contact matrix at the binning resolution of 40 Kb, 100 Kb, and 250 Kb. The ICE (Dixon et al., 2012) normalization is applied to remove the bias in the raw matrix using the ICE implement in HiTC with parameters (--sparse. filter 0.02) (Servant et al., 2012). |
OTHER |
GENOMIC |
unspecified |
PAIRED
|
|
| Processing |
Planned read length (bp) for mate 1: 100
Planned read length (bp) for mate 2: 100
|
| Release date | 2017-07-13 |
|---|
| Run |
| Run accession |
Run data file information |
| File name | File size (MB) |
|---|
| CRR019654 |
CRD039095
CRD039096
CRD039098
CRD039099
|
12,965.75
13,107.09
13,174.83
13,308.07
|
|
| Submitter | Xuepeng Chen (chenxp@big.ac.cn) |
|---|
| Organization | Beijing Institute of Genomics, Chinese Academy of Sciences |
|---|
| Date submitted | 2017-05-24 |
|---|
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