Gene Expression Nebulas (GEN) is a data portal of gene expression profiles under various conditions derived entirely from RNA-Seq data analysis in multiple species.

Resources

MTD

Mammalian Transcriptomic Database (MTD) is focused on mammalian transcriptomes with a current version that contains data from humans, mice, rats and pigs.

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RED

Rice Expression Database (RED) includes rice RNA-seq data exclusively, providing information on gene expression profiles of tissues under a wide range of treatments.

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ICG

ICG is a freely accessible database of Internal Control Genes for normalization of gene expression data by RT-qPCR.


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Publications

Please cite

  • Rice Expression Database (RED): an integrated RNA-Seq-derived gene expression database for rice Journal of Genetics and Genomics ,2017, 44(5):235-241. [PMID=28529082]
  • The BIG Data Center: from deposition to integration to translation. Nucleic Acids Res 5 (D1), D12-D17 (2017).[PMID=27899658]
  • The IC4R Project Consortium: Information Commons for Rice (IC4R). Nucleic Acids Res 2016, 44(D1):D1172-1180. [PMID=26519466]
  • MTD: a mammalian transcriptomic database to explore gene expression and regulation. Brief Bioinform 2016. [PMID=26822098].

Data Statistics

  • Human: 31 Tissues/cell lines
  • Mouse: 44 Tissues/cell lines
  • Pig: 13 Tissues/cell lines
  • Rat: 14 Tissues/cell lines
  • Rice: 8 Tissues/218 Experiments

Release Notes

  • Gene Expression Nebulas is available online on April 2016.
  • RED is upgraded with high-quality RNA-Seq data integrated on January 2016.
  • Mammalian transcriptome database (MTD) is publicly accessible since November 2015.
  • Rice Expression Database (RED) is available online since May 2015.

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