DogGD
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Dhole
Gray wolf
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78 Samples Variation
127 Samples Variation
722 Samples Variation
27 Ancient Samples Variation
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iDog
DogGD
Blast
blastn
blastp
blastx
tblastn
Dog Genome Database
BLAST protein to translated nucleotide databsae(tblastn)
Database:
Dhole(Scaffold)
Dhole(CDS)
Wolf(Scaffold)
Wolf(CDS)
Input:
MAVLGFPFGSVAPKFLQVRWLRCAFQLLRSMRRYEVLHGNQRKRRKFLETVELQITLKNYDPQKDKRFSGTVRLKSTPCPKFSVCVVGDQQHCDEAKAVDIPHMDIEALKKLNKNKKLVKKLAKKYDAFLASESLTKQIPRILG
Or load it from disk
Set subsequence:
From
to
General Parameters
Max target sequences
10
50
100
250
500
1000
5000
10000
20000
Expect threshold:
Word size:
2
3
6
Matrix:
PAM30
PAM70
PAM250
BLOSUM80
BLOSUM62
BLOSUM45
BLOSUM50
BLOSUM90
Run tBlastn
Reset
