Database

BioCode

BioCode is a database that archives bioinformatics codes for open source projects.

BioProject

A BioProject is a collection of biological data related to a single initiative, originating from a single organization or from a consortium. A BioProject record provides users a single place to find links to the diverse data types generated for that project.

BioSample

The BioSample database contains descriptions of biological source materials used in experimental assays.

GSA

The Genome Sequence Archive (GSA) is a data repository for genome, transcriptome and other omics primitive sequencing data.

ChickVD

ChickVD hosts the high-quality sequence variation data, variation analysis in the context of chicken genes, cDNAs, chicken orthologs of human disease genes, genetic markers, QTLs etc .

IC4R

Information Commons for Rice (IC4R) is a rice knowledgebase based on an extensible and sustainable architecture that achieves data integration through community-contributed modules.

SilkDB

The Silkworm Knowledgebase (SilkDB) as a highly integrated information system for silkworm data storage, retrieval, visualization, and analysis.

TGD

Taenia is an important pathogenic tapeworm genus including some important parasites such as Taenia solium, Taenia saginata and Taenia asiatica, etc.

VCGDB

Virtual Chinese Genome Database is a dynamic genome database of Chinese population. VCGDB is a big data solution based on public data released by 1000 Genomes Project.

AlzBIG

Alzheimer's disease (AD) is a progressive neurodegenerative disease involving the alteration of gene expression at the whole genome level.

HRGD

The Heterosis related gene database (HRGD) is thus developed as an integrated information resource and analysis platform.

ICG

ICG is a freely accessible database of Internal Control Genes for normalization of gene expression data by RT-qPCR.

MTD

Mammalian Transcriptomic Database (MTD) is focused on mammalian transcriptomes with a current version that contains data from humans, mice, rats and pigs.

RED

Rice Expression Database (RED) is a repository of gene expression profiles derived entirely from RNA-Seq data analysis on tissues spanning an entire range of rice growth stages and covering a wide variety of biotic and abiotic treatments.

WikiCell

WikiCell presents a new model for EST databases that enhances and complements ongoing efforts. Each node of taxonomy at WikiCell has a dedicated wiki page, displaying dynamic pictures, description, references, system tree diagram, statistics and path. The “statistics” section provides the number of current node and next level owned EST. significantly, you can only enter summary page from the statistic section of leaf node page.

DoGSD

Dog Genome SNP Database (DoGSD) is a data container for the variation information of dog/wolf genomes.

RVD

Rice Variation Database is an IC4R (Information Commons for Rice) project that aims to provide a comprehensive collection of Single Nucleotide Polymorphisms (SNPs) based on a large variety of rice cultivars all over the world..

SorGSD

Sorghum genome SNP database (SorGSD), a web-based large scale genome variation database. SorGSD contains 62 million SNPs from a diverse panel of 48 sorghum accessions which were divided into four groups.

VCGDB

Virtual Chinese Genome Database is a dynamic genome database of Chinese population. VCGDB is a big data solution based on public data released by 1000 Genomes Project.

MethBank

MethBank is a repository of whole-genome single-base nucleotide methylome maps for model animals and crops based on NGS Bisulfite-sequencing data.

Database Commons

Database Commons is a curated catalogue of biological databases, providing people with easy access to a comprehensive collection of publicly available biological databases encompassing different data types and spanning diverse organisms.

ESND

ESND is a wiki-based, publicly editable and open-content platform, exploiting the whole power of the scientific community in managing scientific nomenclature. Based on community curation, ESND is capable of achieving accurate, standard, and comprehensive scientific nomenclature.

LncRNAWiki

LncRNAWiki is a wiki-based, publicly editable and open-content platform for community curation of human long non-coding RNAs (lncRNAs), viz., a community-curated resource of lncRNA knowledge.

RiceWiki

RiceWiki, a project of IC4R (Information Commmons for Rice), is a wiki-based, publicly editable and open-content platform for community curation of rice genes, viz., a community-curated resource of rice knowledge.

WikiCell

WikiCell presents a new model for EST databases that enhances and complements ongoing efforts. Each node of taxonomy at WikiCell has a dedicated wiki page, displaying dynamic pictures, description, references, system tree diagram, statistics and path. The “statistics” section provides the number of current node and next level owned EST. significantly, you can only enter summary page from the statistic section of leaf node page.