Database Commons

a catalog of biological databases

e.g., animal; RNA; Methylation; China

Database information

dbPSP (Database for Protein Phosphorylation Sites in Prokaryotes)

General information

Description: dbPSP provides a comprehensive data resource for further studies of protein phosphorylation in prokaryotes.
Year founded: 2015
Last update: 6/12/2014
Version: V 1.0
Accessibility:
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Accessible
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Country/Region: China
Data type:
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Keywords:

Contact information

University/Institution: University of Science and Technology of China
Address: Hefei 230027,China
City: Hefei
Province/State:
Country/Region: China
Contact name (PI/Team): Yu Xue
Contact email (PI/Helpdesk): xueyu@hust.edu.cn

Record metadata

Created on: 2015-06-20
Curated by:
Jian SA [2016-04-04]
Jian SA [2015-06-26]

Ranking

All databases:
3128/4549 (31.26%)
Modification:
146/185 (21.622%)
3128
Total Rank
5
Citations
1
z-index

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Publications

25841437
dbPSP: a curated database for protein phosphorylation sites in prokaryotes. [PMID: 25841437]
Pan Z, Wang B, Zhang Y, Wang Y, Ullah S, Jian R, Liu Z, Xue Y.

As one of the most important post-translational modifications, phosphorylation is highly involved in almost all of biological processes through temporally and spatially modifying substrate proteins. Recently, phosphorylation in prokaryotes attracted much attention for its critical roles in various cellular processes such as signal transduction. Thus, an integrative data resource of the prokaryotic phosphorylation will be useful for further analysis. In this study, we presented a curated database of phosphorylation sites in prokaryotes (dbPSP, Database URL: http://dbpsp.biocuckoo.org) for 96 prokaryotic organisms, which belong to 11 phyla in two domains including bacteria and archaea. From the scientific literature, we manually collected experimentally identified phosphorylation sites on seven types of residues, including serine, threonine, tyrosine, aspartic acid, histidine, cysteine and arginine. In total, the dbPSP database contains 7391 phosphorylation sites in 3750 prokaryotic proteins. With the dataset, the sequence preferences of the phosphorylation sites and functional annotations of the phosphoproteins were analyzed, while the results shows that there were obvious differences among the phosphorylation in bacteria, archaea and eukaryotes. All the phosphorylation sites were annotated with original references and other descriptions in the database, which could be easily accessed through user-friendly website interface including various search and browse options. Taken together, the dbPSP database provides a comprehensive data resource for further studies of protein phosphorylation in prokaryotes. Database URL: http://dbpsp.biocuckoo.org © The Author(s) 2015. Published by Oxford University Press.

Database (Oxford). 2015:2015() | 5 Citations (from Europe PMC, 2020-05-23)