dbPSP Edit

Citations: 4

z-index: 1

Basic information
Short name dbPSP
Full name Database for Protein Phosphorylation Sites in Prokaryotes
Description dbPSP provides a comprehensive data resource for further studies of protein phosphorylation in prokaryotes.
URL http://dbpsp.biocuckoo.org/
Year founded 2015
Last update & version 6/12/2014 V 1.0
Accessibility Accessible
Contact information

The contact information is provided to facilitate update of database information, and it is curated based on the contact details in the database or the related publications. To ensure effective contact with database constructors, we give priority to the contact details in the database.

University/Institution University of Science and Technology of China
Address Hefei 230027,China
City Hefei
Province/State
Country/Region China
Contact name (PI/Team) Yu Xue
Contact email (PI/Helpdesk) xueyu@hust.edu.cn
Data information
Data object
Data type
Database category
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Keyword
Publications
  • dbPSP: a curated database for protein phosphorylation sites in prokaryotes. [PMID: 25841437]
    Zhicheng Pan, Bangshan Wang, Ying Zhang, Yongbo Wang, Shahid Ullah, Ren Jian, Zexian Liu, Yu Xue

    As one of the most important post-translational modifications, phosphorylation is highly involved in almost all of biological processes through temporally and spatially modifying substrate proteins. Recently, phosphorylation in prokaryotes attracted much attention for its critical roles in various cellular processes such as signal transduction. Thus, an integrative data resource of the prokaryotic phosphorylation will be useful for further analysis. In this study, we presented a curated database of phosphorylation sites in prokaryotes (dbPSP, Database URL: http://dbpsp.biocuckoo.org) for 96 prokaryotic organisms, which belong to 11 phyla in two domains including bacteria and archaea. From the scientific literature, we manually collected experimentally identified phosphorylation sites on seven types of residues, including serine, threonine, tyrosine, aspartic acid, histidine, cysteine and arginine. In total, the dbPSP database contains 7391 phosphorylation sites in 3750 prokaryotic proteins. With the dataset, the sequence preferences of the phosphorylation sites and functional annotations of the phosphoproteins were analyzed, while the results shows that there were obvious differences among the phosphorylation in bacteria, archaea and eukaryotes. All the phosphorylation sites were annotated with original references and other descriptions in the database, which could be easily accessed through user-friendly website interface including various search and browse options. Taken together, the dbPSP database provides a comprehensive data resource for further studies of protein phosphorylation in prokaryotes. Database URL: http://dbpsp.biocuckoo.org © The Author(s) 2015. Published by Oxford University Press.

    Database (Oxford) 2015:2015()

    4 Citations (from Europe PMC, 2019-07-13)

Rank

  • Ranking in all databases: No. 3026
  • Ranking in category/categories:
    • Modification: No. 131
The box plots depict Z-index distribution for all databases in Database Commons and for specific database category/categories. The red line indicates log2(Z-index) of dbPSP.

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Record metadata

  • Created on: 2015-06-20
    • ***gj@***c.cn [2016-04-04]
    • ***gj@***c.cn [2015-06-26]

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