FixPred Edit

Citations: 2

z-index: 0.4

Basic information
Short name FixPred
Full name FixPred Database
Description The FixPred database is a collection of protein sequences corrected by the FixPred pipeline.
URL http://www.fixpred.com
Year founded 2014
Last update & version 2014.01.01 v7.0
Accessibility Accessible
Contact information

The contact information is provided to facilitate update of database information, and it is curated based on the contact details in the database or the related publications. To ensure effective contact with database constructors, we give priority to the contact details in the database.

University/Institution Institute of Enzymology, Hungarian Academy of Sciences
Address H-1117 Budapest,Hungary Magyar tudósok krt 2
City Budapest
Province/State
Country/Region Hungary
Contact name (PI/Team) Laszlo Patthy
Contact email (PI/Helpdesk) patthy.laszlo@ttk.mta.hu
Data information
Data object
Data type
Database category
Major organism
Keyword
Publications
  • FixPred: a resource for correction of erroneous protein sequences. [PMID: 24705206]
    Alinda Nagy, László Patthy

    Protein databases are heavily contaminated with erroneous (mispredicted, abnormal and incomplete) sequences and these erroneous data significantly distort the conclusions drawn from genome-scale protein sequence analyses. In our earlier work we described the MisPred resource that serves to identify erroneous sequences; here we present the FixPred computational pipeline that automatically corrects sequences identified by MisPred as erroneous. The current version of the associated FixPred database contains corrected UniProtKB/Swiss-Prot and NCBI/RefSeq sequences from Homo sapiens, Mus musculus, Rattus norvegicus, Monodelphis domestica, Gallus gallus, Xenopus tropicalis, Danio rerio, Fugu rubripes, Ciona intestinalis, Branchostoma floridae, Drosophila melanogaster and Caenorhabditis elegans; future releases of the FixPred database will include corrected sequences of additional Metazoan species. The FixPred computational pipeline and database (http://www.fixpred.com) are easily accessible through a simple web interface coupled to a powerful query engine and a standard web service. The content is completely or partially downloadable in a variety of formats. Database URL: http://www.fixpred.com.

    Database (Oxford) 2014:2014()

    2 Citations (from Europe PMC, 2019-06-22)

Rank

  • Ranking in all databases: No. 3811
  • Ranking in category/categories:
    • Gene genome and annotation: No. 1044
The box plots depict Z-index distribution for all databases in Database Commons and for specific database category/categories. The red line indicates log2(Z-index) of FixPred.

Word cloud

Related Database

Cited

Citing

Record metadata

  • Created on: 2015-06-20
    • ***ina@***c.cn [2019-06-10]
    • ***thy.laszlo@***ta.hu [2018-12-06]
    • ***ina@***c.cn [2018-12-05]
    • ***gj@***c.cn [2016-04-03]
    • ***ina@***c.cn [2015-12-31]
    • ***gj@***c.cn [2015-06-27]

Community reviews 0 stars (0 reviews)

Data
quality & quantity
Content
organization & presentation
System
accessibility & reliability
Reviewed by