dbPPT Edit

Citations: 9

z-index: 2.25

Basic information
Short name dbPPT
Full name Database of Protein Phosphorylation in Plants
Description dbPPT collects experimentally identified phosphorylation sites in proteins, it contains large-scale phosphorylation sites (p-sites) based on mass spectrometry across 20 plant specie
URL http://dbppt.biocuckoo.org/
Year founded 2014
Last update & version 7/2/2014 v1.0
Availability Free to all users
Contact information
University/Institution hosted Huazhong University of Science and Technology
Address Wuhan, Hubei 430074,China
City Wuhan
Province/State Hubei
Country/Region China
Contact name Yu Xue
Contact email lzx@hust.edu.cn
Data information
Object(s)
Data type(s)
  • Protein
Data Category/Categories
  • Modification
Major organism(s)
Keyword(s)
  • post-translational modification
  • protein phosphorylation
Publications
  • dbPPT: a comprehensive database of protein phosphorylation in plants.[PMID: 25534750]
    Han Cheng, Wankun Deng, Yongbo Wang, Jian Ren, Zexian Liu, Yu Xue

    As one of the most important protein post-translational modifications, the reversible phosphorylation is critical for plants in regulating a variety of biological processes such as cellular metabolism, signal transduction and responses to environmental stress. Numerous efforts especially large-scale phosphoproteome profiling studies have been contributed to dissect the phosphorylation signaling in various plants, while a large number of phosphorylation events were identified. To provide an integrated data resource for further investigations, here we present a comprehensive database of dbPPT (database of Phosphorylation site in PlanTs, at http://dbppt.biocuckoo.org), which contains experimentally identified phosphorylation sites in proteins from plants. The phosphorylation sites in dbPPT were manually curated from the literatures, whereas datasets in other public databases were also integrated. In total, there were 82,175 phosphorylation sites in 31,012 proteins from 20 plant organisms in dbPPT, presenting a larger quantity of phosphorylation sites and a higher coverage of plant species in comparison with other databases. The proportions of residue types including serine, threonine and tyrosine were 77.99, 17.81 and 4.20%, respectively. All the phosphoproteins and phosphorylation sites in the database were critically annotated. Since the phosphorylation signaling in plants attracted great attention recently, such a comprehensive resource of plant protein phosphorylation can be useful for the research community. Database URL: http://dbppt.biocuckoo.or © The Author(s) 2014. Published by Oxford University Press.

    Database : the journal of biological databases and curation 2014:2014()

    9 Citations (from Europe PMC, 2018-10-12)

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Record metadata

  • Created on: 2015-06-21
    • SA Jian [2016-04-04]
    • Zhang Zhang [2015-06-27]
    • SA Jian [2015-06-26]

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