dbPPT Edit

Citations: 10

z-index: 2

Basic information
Short name dbPPT
Full name Database of Protein Phosphorylation in Plants
Description dbPPT collects experimentally identified phosphorylation sites in proteins, it contains large-scale phosphorylation sites (p-sites) based on mass spectrometry across 20 plant specie
URL http://dbppt.biocuckoo.org/
Year founded 2014
Last update & version 7/2/2014 v1.0
Availability Free to all users
Contact information

The contact information is provided to facilitate update of database information, and it is curated based on the contact details in the database or the related publications. To ensure effective contact with database constructors, we give priority to the contact details in the database.

University/Institution Huazhong University of Science and Technology
Address Wuhan, Hubei 430074,China
City Wuhan
Province/State Hubei
Country/Region China
Contact name (PI/Team) Yu Xue
Contact email (PI/Helpdesk) xueyu@hust.edu.cn
Data information
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Data type
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Publications
  • dbPPT: a comprehensive database of protein phosphorylation in plants. [PMID: 25534750]
    Han Cheng, Wankun Deng, Yongbo Wang, Jian Ren, Zexian Liu, Yu Xue

    As one of the most important protein post-translational modifications, the reversible phosphorylation is critical for plants in regulating a variety of biological processes such as cellular metabolism, signal transduction and responses to environmental stress. Numerous efforts especially large-scale phosphoproteome profiling studies have been contributed to dissect the phosphorylation signaling in various plants, while a large number of phosphorylation events were identified. To provide an integrated data resource for further investigations, here we present a comprehensive database of dbPPT (database of Phosphorylation site in PlanTs, at http://dbppt.biocuckoo.org), which contains experimentally identified phosphorylation sites in proteins from plants. The phosphorylation sites in dbPPT were manually curated from the literatures, whereas datasets in other public databases were also integrated. In total, there were 82,175 phosphorylation sites in 31,012 proteins from 20 plant organisms in dbPPT, presenting a larger quantity of phosphorylation sites and a higher coverage of plant species in comparison with other databases. The proportions of residue types including serine, threonine and tyrosine were 77.99, 17.81 and 4.20%, respectively. All the phosphoproteins and phosphorylation sites in the database were critically annotated. Since the phosphorylation signaling in plants attracted great attention recently, such a comprehensive resource of plant protein phosphorylation can be useful for the research community. Database URL: http://dbppt.biocuckoo.or © The Author(s) 2014. Published by Oxford University Press.

    Database (Oxford) 2014:2014()

    10 Citations (from Europe PMC, 2019-05-18)

Rank

  • Ranking in all databases: No. 2227
  • Ranking in category/categories:
    • Modification: No. 107
The box plots depict Z-index distribution for all databases in Database Commons and for specific database category/categories. The red line indicates log2(Z-index) of dbPPT.

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Record metadata

  • Created on: 2015-06-20
    • ***ina@***c.cn [2018-12-06]
    • ***gj@***c.cn [2016-04-04]
    • ***ng***ng@***c.cn [2015-06-27]
    • ***gj@***c.cn [2015-06-26]

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