Database Commons

a catalog of biological databases

e.g., animal; RNA; Methylation; China

Database information

dbPPT (Database of Protein Phosphorylation in Plants)

General information

Description: dbPPT collects experimentally identified phosphorylation sites in proteins, it contains large-scale phosphorylation sites (p-sites) based on mass spectrometry across 20 plant specie
Year founded: 2014
Last update: 7/2/2014
Version: v1.0
Accessibility:
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Country/Region: China
Data type:
Data object:
Database category:
Major organism:
NA
Keywords:

Contact information

University/Institution: Huazhong University of Science and Technology
Address: Wuhan, Hubei 430074,China
City: Wuhan
Province/State: Hubei
Country/Region: China
Contact name (PI/Team): Yu Xue
Contact email (PI/Helpdesk): xueyu@hust.edu.cn

Record metadata

Created on: 2015-06-20
Curated by:
Lina Ma [2018-12-06]
Jian SA [2016-04-04]
Zhang Zhang [2015-06-27]
Jian SA [2015-06-26]

Ranking

All databases:
2251/4516 (50.177%)
Modification:
105/183 (43.169%)
2251
Total Rank
12
Citations
2
z-index

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Publications

25534750
dbPPT: a comprehensive database of protein phosphorylation in plants. [PMID: 25534750]
Cheng H, Deng W, Wang Y, Ren J, Liu Z, Xue Y.

As one of the most important protein post-translational modifications, the reversible phosphorylation is critical for plants in regulating a variety of biological processes such as cellular metabolism, signal transduction and responses to environmental stress. Numerous efforts especially large-scale phosphoproteome profiling studies have been contributed to dissect the phosphorylation signaling in various plants, while a large number of phosphorylation events were identified. To provide an integrated data resource for further investigations, here we present a comprehensive database of dbPPT (database of Phosphorylation site in PlanTs, at http://dbppt.biocuckoo.org), which contains experimentally identified phosphorylation sites in proteins from plants. The phosphorylation sites in dbPPT were manually curated from the literatures, whereas datasets in other public databases were also integrated. In total, there were 82,175 phosphorylation sites in 31,012 proteins from 20 plant organisms in dbPPT, presenting a larger quantity of phosphorylation sites and a higher coverage of plant species in comparison with other databases. The proportions of residue types including serine, threonine and tyrosine were 77.99, 17.81 and 4.20%, respectively. All the phosphoproteins and phosphorylation sites in the database were critically annotated. Since the phosphorylation signaling in plants attracted great attention recently, such a comprehensive resource of plant protein phosphorylation can be useful for the research community. Database URL: http://dbppt.biocuckoo.or © The Author(s) 2014. Published by Oxford University Press.

Database (Oxford). 2014:2014() | 12 Citations (from Europe PMC, 2020-01-25)