Database Commons

a catalog of biological databases

e.g., animal; RNA; Methylation; China

Database Profile

General information

URL: http://crmarker.hnnu.edu.cn
Full name: CANCER RNA MARKERS
Description: A manually curated comprehensive resource of cancer RNA markers
Year founded: 2019
Last update: 2020-04-10
Version: v1.1
Accessibility:
Manual:
Accessible
Real time : Checking...
Country/Region: China
Data type:
RNA
Data object:
Database category:
Major organism:
Keywords:

Contact information

University/Institution: Huainan Normal University
Address: School of Biological Engineering,Huainan Normal University
City:
Province/State: Anhui
Country/Region: China
Contact name (PI/Team): Jifeng Zhang
Contact email (PI/Helpdesk): jifengzhang@hnnu.edu.cn

Publications

33529633
CRMarker: A manually curated comprehensive resource of cancer RNA markers. [PMID: 33529633]
Jifeng Zhang, Shoubao Yan, Ruoyu Li, Gangyuan Wang, Siyong Kang, Ying Wang, Wenmin Hou, Chenrun Wang, Weidong Tian

Biomolecular markers have extremely important value for cancer research and treatment. However, as far as we know, there are still no searchable and predictable resources focusing on multiple classes of RNA molecular markers in cancers. Herein, we developed CRMarker, a manually curated comprehensive repository of cancer RNA markers. In the current release, CRMarker v1.1 consists of 5489 "known" cancer RNA markers based on 8756 valid publications in PubMed, including 2878 mRNAs (genes), 1314 miRNAs, 1097 lncRNAs and 200 circRNAs, and involving two functional molecules (diagnosis and prognosis), 21 organisms and 154 cancers. The search results provided by the database are comprehensive, including 11 items such as RNA molecule expression and risk level, type of tissue or sample, cancer subtype, reference type, etc. Moreover, CRMarker also provides more than 18,000 potential cancer RNA markers, which are predicted based on "guilt-by-association" analysis of the above-mentioned "known" RNA markers and three molecular interaction networks, and survival analysis of 18 gene expression data sets with survival data. CRMarker v1.1 has a friendly interface and is freely available online at http://crmarker.hnnu.edu.cn/. We aim to build a comprehensive platform that is convenient for cancer researchers and clinicians to inquire and retrieve.

Int J Biol Macromol. 2021:174() | 0 Citations (from Europe PMC, 2021-02-27)

Ranking

0
Citations
0
z-index

Community reviews

Not Rated
Data quality & quantity:
Content organization & presentation
System accessibility & reliability:

Word cloud

Related Databases

Record metadata

Created on: 2021-02-18
Curated by:
lin liu [2021-02-19]
Dong Zou [2021-02-18]