Database Commons

a catalog of biological databases

e.g., animal; RNA; Methylation; China

Database Profile

General information

URL: http://AciDB.cl
Full name:
Description: a curated database of sequenced acidophiles that enables researchers to execute complex queries linking genomic features to growth data, environmental descriptions and taxonomic information.
Year founded: 2020
Last update:
Version: 1.0
Accessibility:
Manual:
Accessible
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Country/Region: Chile
Data type:
DNA
Data object:
Database category:
Major organism:
NA
Keywords:

Contact information

University/Institution: San Sebastian University
Address: Center for Bioinformatics and Genome Biology, Fundación Ciencia & Vida, Santiago, Chile
City: Santiago
Province/State:
Country/Region: Chile
Contact name (PI/Team): David S Holmes
Contact email (PI/Helpdesk): dsholmes2000@yahoo.com

Publications

32702093
AciDB 1.0: A database of acidophilic organisms, their genomic information and associated metadata. [PMID: 32702093]
Gonzalo Neira, Diego Cortez, Joaquin Jil, David S Holmes

MOTIVATION: There are about 600 available genome sequences of acidophilic organisms (grow at a pH < 5) from the three domains of the Tree of Life. Information about acidophiles is scattered over many heterogeneous sites making it extraordinarily difficult to link physiological traits with genomic data. We were motivated to generate a curated, searchable database to address this problem.
RESULTS: AciDB 1.0 is a curated database of sequenced acidophiles that enables researchers to execute complex queries linking genomic features to growth data, environmental descriptions and taxonomic information.
AVAILABILITY: AciDB 1.0 is freely available online at: http://AciDB.cl. The source code is released under an MIT license at: https://gitlab.com/Hawkline451/acidb/.

Bioinformatics. 2020:() | 0 Citations (from Europe PMC, 2020-11-28)

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Record metadata

Created on: 2020-11-10
Curated by:
Lina Ma [2020-11-17]
Dong Zou [2020-11-10]