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a catalog of biological databases

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Database information

DEPOD (Human DEPhOsphorylation Database)

General information

Description: DEPOD - the human DEPhOsphorylation Database (version 1.1) is a manually curated database collecting human active phosphatases, their experimentally verified protein and non-protein substrates and dephosphorylation site information, and pathways in which they are involved.
Year founded: 2013
Last update: 2014-8-15
Version: v1.0
Accessibility:
Manual:
Accessible
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Country/Region: Germany
Data type:
Data object:
Database category:
Major organism:
Keywords:

Contact information

University/Institution: European Molecular Biology Laboratory
Address: European Molecular Biology Laboratory, Genome Biology Unit, Meyerhofstrasse 1, 69117 Heidelberg, Germany
City: Heidelberg
Province/State:
Country/Region: Germany
Contact name (PI/Team): Maja KÅ¡hn
Contact email (PI/Helpdesk): koehn@embl.de

Record metadata

Created on: 2015-06-20
Curated by:
Lina Ma [2018-06-14]
Jian SA [2016-04-04]
Mengwei Li [2016-02-21]
Mengwei Li [2016-02-18]
Jian SA [2015-12-07]
Jian SA [2015-12-06]
Jian SA [2015-06-26]

Ranking

All databases:
1040/4549 (77.16%)
Gene genome and annotation:
331/1211 (72.75%)
1040
Total Rank
31
Citations
6.2
z-index

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Publications

25332398
The human DEPhOsphorylation database DEPOD: a 2015 update. [PMID: 25332398]
Duan G, Li X, Köhn M.

Phosphatases are crucial enzymes in health and disease, but the knowledge of their biological roles is still limited. Identifying substrates continues to be a great challenge. To support the research on phosphatase-kinase-substrate networks we present here an update on the human DEPhOsphorylation Database: DEPOD (http://www.depod.org or http://www.koehn.embl.de/depod). DEPOD is a manually curated open access database providing human phosphatases, their protein and non-protein substrates, dephosphorylation sites, pathway involvements and external links to kinases and small molecule modulators. All internal data are fully searchable including a BLAST application. Since the first release, more human phosphatases and substrates, their associated signaling pathways (also from new sources), and interacting proteins for all phosphatases and protein substrates have been added into DEPOD. The user interface has been further optimized; for example, the interactive human phosphatase-substrate network contains now a 'highlight node' function for phosphatases, which includes the visualization of neighbors in the network. © The Author(s) 2014. Published by Oxford University Press on behalf of Nucleic Acids Research.

Nucleic Acids Res. 2015:43(Database issue) | 31 Citations (from Europe PMC, 2020-02-15)