TopicalPdb Edit

Citations: 1

z-index: 1

Basic information
Short name TopicalPdb
Full name Database of Topically Administered Peptide
Description a repository of experimentally verified topically delivered peptides.
URL http://crdd.osdd.net/raghava/topicalpdb
Year founded
Last update & version
Availability Free to academic users only
Contact information
University/Institution hosted Institute of Microbial Technology
Address
City
Province/State
Country/Region India
Contact name Gajendra P. S. Raghava
Contact email raghava@imtech.res.in
Data information
Data object
  • NA
Data type
  • Protein
Database category
  • Structure
  • Health and medicine
Major organism
  • NA
Keyword
  • peptides
Publications
  • TopicalPdb: A database of topically delivered peptides. [PMID: 29432422]
    Deepika Mathur, Ayesha Mehta, Priyanka Firmal, Gursimran Bedi, Charu Sood, Ankur Gautam, Gajendra P S Raghava

    TopicalPdb (http://crdd.osdd.net/raghava/topicalpdb/) is a repository of experimentally verified topically delivered peptides. Data was manually collected from research articles. The current release of TopicalPdb consists of 657 entries, which includes peptides delivered through the skin (462 entries), eye (173 entries), and nose (22 entries). Each entry provides comprehensive information related to these peptides like the source of origin, nature of peptide, length, N- and C-terminal modifications, mechanism of penetration, type of assays, cargo and biological properties of peptides, etc. In addition to natural peptides, TopicalPdb contains information of peptides having non-natural, chemically modified residues and D-amino acids. Besides this primary information, TopicalPdb stores predicted tertiary structures as well as peptide sequences in SMILE format. Tertiary structures of peptides were predicted using state-of-art method PEPstrMod. In order to assist users, a number of web-based tools have been integrated that includes keyword search, data browsing, similarity search and structural similarity. We believe that TopicalPdb is a unique database of its kind and it will be very useful in designing peptides for non-invasive topical delivery.

    PLoS ONE 2018:13(2)

    1 Citations (from Europe PMC, 2019-01-19)

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Record metadata

  • Created on: 2019-01-15
    • ***ina@***c.cn [2019-01-23]
    • ***d@***c.cn [2019-01-15]
    • ***d@***c.cn [2019-01-15]
    • ***d@***c.cn [2019-01-15]

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