TopicalPdb Edit

Citations: 1

z-index: 1

Basic information
Short name TopicalPdb
Full name Database of Topically Administered Peptide
Description a repository of experimentally verified topically delivered peptides
URL http://crdd.osdd.net/raghava/topicalpdb
Year founded
Last update & version
Accessibility Accessible
Contact information

The contact information is provided to facilitate update of database information, and it is curated based on the contact details in the database or the related publications. To ensure effective contact with database constructors, we give priority to the contact details in the database.

University/Institution Indraprastha Institute of Information Technology
Address
City
Province/State
Country/Region India
Contact name (PI/Team) Gajendra P. S. Raghava
Contact email (PI/Helpdesk) raghava@iiitd.ac.in
Data information
Data object
Data type
Database category
Major organism
Keyword
Publications
  • TopicalPdb: A database of topically delivered peptides. [PMID: 29432422]
    Deepika Mathur, Ayesha Mehta, Priyanka Firmal, Gursimran Bedi, Charu Sood, Ankur Gautam, Gajendra P S Raghava

    TopicalPdb (http://crdd.osdd.net/raghava/topicalpdb/) is a repository of experimentally verified topically delivered peptides. Data was manually collected from research articles. The current release of TopicalPdb consists of 657 entries, which includes peptides delivered through the skin (462 entries), eye (173 entries), and nose (22 entries). Each entry provides comprehensive information related to these peptides like the source of origin, nature of peptide, length, N- and C-terminal modifications, mechanism of penetration, type of assays, cargo and biological properties of peptides, etc. In addition to natural peptides, TopicalPdb contains information of peptides having non-natural, chemically modified residues and D-amino acids. Besides this primary information, TopicalPdb stores predicted tertiary structures as well as peptide sequences in SMILE format. Tertiary structures of peptides were predicted using state-of-art method PEPstrMod. In order to assist users, a number of web-based tools have been integrated that includes keyword search, data browsing, similarity search and structural similarity. We believe that TopicalPdb is a unique database of its kind and it will be very useful in designing peptides for non-invasive topical delivery.

    PLoS One 2018:13(2)

    1 Citations (from Europe PMC, 2019-07-27)

Rank

  • Ranking in all databases: No. 3217
  • Ranking in category/categories:
    • Structure: No. 394
    • Health and medicine: No. 590
The box plots depict Z-index distribution for all databases in Database Commons and for specific database category/categories. The red line indicates log2(Z-index) of TopicalPdb.

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Record metadata

  • Created on: 2019-01-15
    • ***ina@***c.cn [2019-05-24]
    • ***ina@***c.cn [2019-01-23]
    • ***d@***c.cn [2019-01-15]
    • ***d@***c.cn [2019-01-15]
    • ***d@***c.cn [2019-01-15]

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