PED Edit

Citations: 0

z-index: 0

Basic information
Short name PED
Full name Plant editosome database
Description a curated database of RNA editosome in plants that is dedicated to the curation, integration and standardization of plant editosome data.
URL http://bigd.big.ac.cn/ped
Year founded 2018
Last update & version 2018-09-20 v1.0
Accessibility Accessible
Contact information

The contact information is provided to facilitate update of database information, and it is curated based on the contact details in the database or the related publications. To ensure effective contact with database constructors, we give priority to the contact details in the database.

University/Institution Beijing Institute of Genomics, Chinese Academy of Sciences
Address No.1 Beichen West Road, Chaoyang District, Beijing 100101, China
City Beijing
Province/State
Country/Region China
Contact name (PI/Team) Zhang Zhang
Contact email (PI/Helpdesk) zhangzhang@big.ac.cn
Data information
Data object
Data type
Database category
Major organism
Keyword
Publications
  • Plant editosome database: a curated database of RNA editosome in plants. [PMID: 30364952]
    Man Li, Lin Xia, Yuansheng Zhang, Guangyi Niu, Mengwei Li, Pei Wang, Yang Zhang, Jian Sang, Dong Zou, Songnian Hu, Lili Hao, Zhang Zhang

    RNA editing plays an important role in plant development and growth, enlisting a number of editing factors in the editing process and accordingly revealing the diversity of plant editosomes for RNA editing. However, there is no resource available thus far that integrates editosome data for a variety of plants. Here, we present Plant Editosome Database (PED; http://bigd.big.ac.cn/ped), a curated database of RNA editosome in plants that is dedicated to the curation, integration and standardization of plant editosome data. Unlike extant relevant databases, PED incorporates high-quality editosome data manually curated from related publications and organelle genome annotations. In the current version, PED integrates a complete collection of 98 RNA editing factors and 20 836 RNA editing events, covering 203 organelle genes and 1621 associated species. In addition, it contains functional effects of editing factors in regulating plant phenotypes and includes detailed experimental evidence. Together, PED serves as an important resource to help researchers investigate the RNA editing process across a wide range of plants and thus would be of broad utility for the global plant research community.

    Nucleic Acids Res 2019:47(D1)

    0 Citations (from Europe PMC, 2019-07-27)

Rank

  • Ranking in all databases: No. 1204
  • Ranking in category/categories:
    • Modification: No. 0
    • Literature: No. 0
The box plots depict Z-index distribution for all databases in Database Commons and for specific database category/categories. The red line indicates log2(Z-index) of PED.

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Record metadata

  • Created on: 2019-01-04
    • ***ina@***c.cn [2019-03-08]
    • ***d@***c.cn [2019-01-08]
    • ***d@***c.cn [2019-01-08]
    • ***d@***c.cn [2019-01-04]

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