Database Commons
Database Commons

a catalog of worldwide biological databases

Database Profile

General information

URL: http://webapps2.ucalgary.ca/~groupii/index.html#
Full name: Database for bacterial group II introns
Description: Database for bacterial group II introns provides a catalogue of full-length,non-redundant group II introns present in bacterial DNA sequences in GenBank.
Year founded: 2012
Last update: 12/2/2014
Version: v1.0
Accessibility:
Manual:
Accessible
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Country/Region: Canada

Classification & Tag

Data type:
DNA
Data object:
Database category:
Major species:
Keywords:

Contact information

University/Institution: University of Calgary
Address: Department of Biological Sciences,University of Calgary,Calgary,Alberta T2N 1N4,Canada
City: Calgary
Province/State: Alberta
Country/Region: Canada
Contact name (PI/Team): Steven Zimmerly
Contact email (PI/Helpdesk): zimmerly@ucalgary.ca

Publications

22080509
Database for bacterial group II introns. [PMID: 22080509]
Candales MA, Duong A, Hood KS, Li T, Neufeld RA, Sun R, McNeil BA, Wu L, Jarding AM, Zimmerly S.

The Database for Bacterial Group II Introns (http://webapps2.ucalgary.ca/~groupii/index.html#) provides a catalogue of full-length, non-redundant group II introns present in bacterial DNA sequences in GenBank. The website is divided into three sections. The first section provides general information on group II intron properties, structures and classification. The second and main section lists information for individual introns, including insertion sites, DNA sequences, intron-encoded protein sequences and RNA secondary structure models. The final section provides tools for identification and analysis of intron sequences. These include a step-by-step guide to identify introns in genomic sequences, a local BLAST tool to identify closest intron relatives to a query sequence, and a boundary-finding tool that predicts 5' and 3' intron-exon junctions in an input DNA sequence. Finally, selected intron data can be downloaded in FASTA format. It is hoped that this database will be a useful resource not only to group II intron and RNA researchers, but also to microbiologists who encounter these unexpected introns in genomic sequences.

Nucleic Acids Res. 2012:40(Database issue) | 63 Citations (from Europe PMC, 2024-04-27)

Ranking

All databases:
1663/6000 (72.3%)
1663
Total Rank
63
Citations
5.25
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Record metadata

Created on: 2015-06-20
Curated by:
Jian Sang [2016-04-04]
Jian Sang [2015-12-01]
Jian Sang [2015-06-26]