Database Commons

a catalog of biological databases

e.g., animal; RNA; Methylation; China

Database information

CircaDB (Circadian Database)

General information

Description: CircaDB is a new database of circadian transcriptional profiles from time course expression experiments from mice and humans.
Year founded: 2012
Last update: 2/12/2015
Version: v1.0
Accessibility:
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Accessible
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Country/Region: United States
Data type:
Data object:
Database category:
Major organism:
Keywords:

Contact information

University/Institution: University of Pennsylvania
Address: 3400 Civic Center Boulevard, Building 421, Philadelphia, PA 19104, USA
City: Philadelphia
Province/State: PA
Country/Region: United States
Contact name (PI/Team): Angel Pizarro
Contact email (PI/Helpdesk): angel@upenn.edu

Related Database

Record metadata

Created on: 2015-06-20
Curated by:
Mengwei Li [2016-03-31]
Mengwei Li [2015-12-02]
Mengwei Li [2015-06-27]

Ranking

All databases:
486/4549 (89.338%)
Expression:
71/800 (91.25%)
486
Total Rank
102
Citations
14.571
z-index

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Publications

23180795
CircaDB: a database of mammalian circadian gene expression profiles. [PMID: 23180795]
Pizarro A, Hayer K, Lahens NF, Hogenesch JB.

CircaDB (http://circadb.org) is a new database of circadian transcriptional profiles from time course expression experiments from mice and humans. Each transcript's expression was evaluated by three separate algorithms, JTK_Cycle, Lomb Scargle and DeLichtenberg. Users can query the gene annotations using simple and powerful full text search terms, restrict results to specific data sets and provide probability thresholds for each algorithm. Visualizations of the data are intuitive charts that convey profile information more effectively than a table of probabilities. The CircaDB web application is open source and available at http://github.com/itmat/circadb.

Nucleic Acids Res. 2013:41(Database issue) | 102 Citations (from Europe PMC, 2020-02-15)