Database Commons
Database Commons

a catalog of worldwide biological databases

Database Profile

General information

URL: http://www.bicnbu.in/mycosec
Full name: Mycobacterial Secretomes
Description: The database provides a platform for retrieval and analysis of identified secretomes in all finished genomes of the family Mycobacteriaceae.
Year founded: 2013
Last update:
Version:
Accessibility:
Manual:
Accessible
Real time : Checking...
Country/Region: India

Classification & Tag

Data type:
Data object:
Database category:
Major species:
NA
Keywords:

Contact information

University/Institution: University of North Bengal
Address:
City: Siliguri
Province/State:
Country/Region: India
Contact name (PI/Team): Arnab Sen
Contact email (PI/Helpdesk): senarnab_nbu@hotmail.com

Publications

23952586
A database for Mycobacterium secretome analysis: 'MycoSec' to accelerate global health research. [PMID: 23952586]
Roy A, Bhattacharya S, Bothra AK, Sen A.

Abstract Members of the genus Mycobacterium are notorious for their pathogenesis. Investigations from various perspectives have identified the pathogenic strategies employed by these lethal pathogens. Secretomes are believed to play crucial roles in host cell recognition and cross-talks, in cellular attachment, and in triggering other functions related to host pathogen interactions. However, a proper idea of the mycobacterial secretomes and their mechanism of functionality still remains elusive. In the present study, we have developed a comprehensive database of potential mycobacterial secretomes (MycoSec) using pre-existing algorithms for secretome prediction for researchers interested in this particular field. The database provides a platform for retrieval and analysis of identified secretomes in all finished genomes of the family Mycobacteriaceae. The database contains valuable information regarding secretory signal peptides (Sec type), lipoprotein signal peptides (Lipo type), and Twin arginine (RR/KR) signal peptides (TAT type), prevalent in mycobacteria. Information pertaining to COG analysis, codon usage, and gene expression of the predicted secretomes has also been incorporated in the database. MycoSec promises to be a useful repertoire providing a plethora of information regarding mycobacterial secretomes and may well be a platform to speed global health research. MycoSec is freely accessible at http://www.bicnbu.in/mycosec .

OMICS. 2013:17(10) | 6 Citations (from Europe PMC, 2024-04-20)

Ranking

All databases:
5219/6000 (13.033%)
Health and medicine:
1208/1394 (13.415%)
5219
Total Rank
5
Citations
0.455
z-index

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Record metadata

Created on: 2018-01-27
Curated by:
Dong Zou [2018-07-12]
Zhuang Xiong [2018-07-11]
Zhuang Xiong [2018-04-04]
Zhuang Xiong [2018-02-24]
Lina Ma [2018-01-27]