a catalog of biological databases
|Description:||We have developed and validated a system of Grapevine Molecular Networks (VitisNet).The sequences from the Vitis vinifera (cv. Pinot Noir PN40024, 12X V1) genome sequencing project and ESTs from the Vitis genus have been paired and the 51,476 resulting unique sequences have been manually annotated.|
|University/Institution:||South Dakota State University|
|Address:||1390 College Ave 247 McFadden BioStress|
|Contact name (PI/Team):||Anne Y. Fennell|
|Contact email (PI/Helpdesk):||firstname.lastname@example.org|
Comparative analysis of grapevine whole-genome gene predictions, functional annotation, categorization and integration of the predicted gene sequences. [PMID: 22554261]
BACKGROUND: The first draft assembly and gene prediction of the grapevine genome (8X base coverage) was made available to the scientific community in 2007, and functional annotation was developed on this gene prediction. Since then additional Sanger sequences were added to the 8X sequences pool and a new version of the genomic sequence with superior base coverage (12X) was produced.
VitisNet: "Omics" integration through grapevine molecular networks. [PMID: 20027228]
BACKGROUND: Genomic data release for the grapevine has increased exponentially in the last five years. The Vitis vinifera genome has been sequenced and Vitis EST, transcriptomic, proteomic, and metabolomic tools and data sets continue to be developed. The next critical challenge is to provide biological meaning to this tremendous amount of data by annotating genes and integrating them within their biological context. We have developed and validated a system of Grapevine Molecular Networks (VitisNet).