Introduction

Publications

Manual

StringTie is a fast and highly efficient assembler of RNA-Seq alignments into potential transcripts. It uses a novel network flow algorithm as well as an optional de novo assembly step to assemble and quantitate full-length transcripts representing multiple splice variants for each gene locus.

References:

  1. Pertea M, Pertea GM, Antonescu CM, Chang TC, Mendell JT & Salzberg SL. StringTie enables improved reconstruction of a transcriptome from RNA-seq reads Nature Biotechnology 2015

Basic Infomation

NameStringTie: Assemble
AccessionQT000027
Citation0
ContributorsPertea M, Pertea GM, Antonescu CM, Chang TC, Mendell JT, Salzberg SL, qomoteam
Permalinkhttp://bigd.big.ac.cn/cloud/tools/QT000027
Websitehttp://bigd.big.ac.cn/cloud/users/bigd/tools/StringTie:%20Assemble
Created AtApril 25, 2016
Updated AtOctober 31, 2016
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