Introduction

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Manual

Crossbow is a scalable, portable, and automatic Cloud Computing tool for finding SNPs from short read data. Crossbow employs Bowtie and a modified version of SOAPsnp to perform the short read alignment and SNP calling respectively.

Reference:

  1. Langmead B, Schatz M, Lin J, Pop M, Salzberg SL.Searching for SNPs with cloud computing. Genome Biology 10:R134.
  2. Schatz M, Langmead B, Salzberg SL. Cloud computing and the DNA data race. Nature Biotechnology 2010 Jul;28(7):691-3.
  3. Langmead B, Hansen K, Leek J. Cloud-scale RNA-sequencing differential expression analysis with Myrna. Genome Biology 11:R83.
  4. Langmead B, Trapnell C, Pop M, Salzberg SL. Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biology 10:R25.
  5. Li R, Li Y, Fang X, Yang H, Wang J, Kristiansen K, Wang J.SNP detection for massively parallel whole-genome resequencing. Genome Res. 2009. 19: 1124-1132.

Basic Infomation

NameCrossbow
AccessionQT000012
Citation0
ContributorsLangmead B, Schatz M, Lin J, Pop M, Salzberg SL
Permalinkhttp://bigd.big.ac.cn/cloud/tools/QT000012
Websitehttp://bigd.big.ac.cn/cloud/users/bigd/tools/Crossbow
Created AtSeptember 21, 2016
Updated AtOctober 31, 2016
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