ggaS30695121

Detail information of ggaS30695121

1.General Information

Reference SNP ID:	ggaS30695121
Chromosome:	chr26
Position:	243
RefSNP Alleles	A/C
NCBI ss link

2.Gene information

Var ID	Gene ID	Transcript ID	Gene Symbol	Variant Effect	Biotype	cDNA Position	Allele Change	Protein ID	Protein Position	Residue Change
ggaS30695121	-	-		intergenic_variant	-	0	- => -	-	0	- => -

3.Individual Genotype

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Individual	Genotype
100S	A
101S_L1_I028	A
102S_L3_I037	A
103S	A
104S_L7_I029	M
105S_L3_I039	A
106S_L6_I030	A
107S_L2_I031	A
108S_L6_I032	A
109S_L5_I033	A
10S_L1_I052	A
110S_L4_I034	A
111S_L3_I047	A
112S_L3_I035	A
113S_L1_I036	A
114S_L3_I037	A
116S_L6_I038	A
117S_L2_I039	A
118S_L4_I040	A
119S_L3_I041	A
11S	A
120S_L1_I041	A
121S_L3_I042	A
122S_L4_I043	A
123S_L4_I044	A
124S_L2_I048	M
125S_L3_I050	A
126S_L3_I051	A
127S_L2_I045	A
128S_L1_I042	A
129S_L3_I043	A
12S_L4_I011	A
130S_L4_I044	A
131S_L2_I045	A
132S_L2_I046	A
133S_L8_I046	A
134S_L2_I047	A
135S_L3_I048	A
13S_L7_I012	A
14S_L2_I021	A
15S_L6_I022	A
16S_L5_I023	A
17S_L3_I024	A
18833	A
18S_L7_I025	A
19297	A
19912	A
19S_L4_I026	A
1S	A
20736	C
20S_L7_I027	A
21S_L6_I028	A
22S_L6_I029	A
23S_L2_I030	A
24S_L4_I031	A
25S_L3_I032	A
26S	A
27S_L4_I034	A
28S_L4_I035	A
29S_L3_I036	A
2S	A
30S_L2_I037	M
31S_L3_I038	A
32S_L1_I039	A
33S	A
35S_L5_I041	M
36S_L5_I042	A
37S_L2_I043	A
38S_L6_I044	A
39S_L6_I053	A
3S_L4_I003	A
40S_L2_I054	A
41S_L5_I045	A
42S_L3_I055	A
43S	A
44S_L4_I001	A
45S_L2_I002	M
46S_L4_I003	A
47S_L3_I046	A
48S_L1_I004	A
49S_L1_I005	M
4S_L4_I004	A
50S_L1_I047	M
51S_L6_I048	C
52S_L2_I050	M
53S_L2_I006	M
54S_L2_I007	A
55S_L1_I008	A
56S_L1_I010	A
57S_L3_I046	A
58S_L4_I051	A
59S_L5_I052	A
5S	A
60S_L5_I053	A
61S_L8_I054	A
62S_L8_I055	A
63S_L5_I056	A
64S_L4_I001	A
65S_L5_I002	A
66S_L2_I003	A
67S_L1_I011	A
68S_L3_I012	M
69S	A
6S	A
70S	A
71S_L3_I023	A
72S_L1_I024	A
73S_L1_I025	A
74S_L4_I026	A
75S_L3_I027	A
76S_L1_I028	A
77S_L4_I029	A
78S_L4_I030	A
79S_L2_I031	A
7S_L4_I007	A
80S_L3_I004	A
81S_L1_I005	A
82S	A
83S_L3_I033	A
84S_L5_I006	A
85S_L5_I007	A
86S_L5_I008	A
87S_L5_I010	A
88S_L4_I011	A
89S_L6_I012	A
90S_L4_I021	A
91S_L4_I022	A
92S_L5_I023	A
93S_L7_I024	A
95S_L8_I025	A
96S_L4_I026	A
97S_L8_I027	A
98S_L3_I034	A
99S_L2_I035	A
9S	A
A1	A
A10	C
A12	A
A14	A
A3	A
A8	A
BKL2	A
BLB1_L2_I007	A
BLB2_L2_I008	A
BLO1	A
BLO11	A
BLO2	A
BLO3_L4_I022	A
BOJA2	A
BYW3_L3_I033	A
BYW5_L2_I010	A
GVF	A
India1	A
India11	A
India13	A
India15	A
India17	A
India19	A
India21	A
India23	A
India25	A
India27	A
India29	A
India31	M
India33	A
India35	A
India37	A
India39	A
India41	A
India43	A
India45	A
India47	A
India5	A
India51	M
India55	A
India57	A
India59	A
India61	C
India7	A
India9	A
L2	A
N1	A
N11	A
N13	A
N18	M
N3	M
N5	A
N7	A
N8	A
S-f1_L4_I106	C
S-f2_I107	M
S-f3_I108	C
S-f4_L4_I109	A
S-m1_I101	M
S-m2_I102	M
S-m3_I103	M
S-m4_L2_I104	A
S-m5_I105	A
S6	M
SAMN02486156	A
SAMN02486157	A
SAMN02486158	A
SAMN02486159	M
SAMN02486160	A
SAMN02486161	A
SAMN02486162	A
SAMN02486163	A
SAMN02486164	A
SAMN02486165	A
SAMN02486166	A
SAMN02486167	A
Silkia	A
T2	M
T3	M
T5	M
TD1	A
TD12	A
TD15	A
TD22	A
TD27	A
TD30	A
TD6	M
TD9	A
Tibet	A
Xcelris_10	C
Xcelris_101	C
Xcelris_104	M
Xcelris_105	M
Xcelris_10A	A
Xcelris_10B	A
Xcelris_112	A
Xcelris_113	A
Xcelris_114	C
Xcelris_11B	A
Xcelris_12	C
Xcelris_120	A
Xcelris_127	M
Xcelris_128	M
Xcelris_129	A
Xcelris_12A	A
Xcelris_13	C
Xcelris_137	C
Xcelris_13B	A
Xcelris_14	A
Xcelris_142	M
Xcelris_143	A
Xcelris_144	M
Xcelris_14A	A
Xcelris_14B	M
Xcelris_174	M
Xcelris_175	M
Xcelris_176	A
Xcelris_1A	A
Xcelris_219	C
Xcelris_221	A
Xcelris_222	C
Xcelris_224	M
Xcelris_226	M
Xcelris_227	M
Xcelris_275	C
Xcelris_276	M
Xcelris_278	C
Xcelris_279	C
Xcelris_280	M
Xcelris_282	C
Xcelris_2A	A
Xcelris_2B	A
Xcelris_331	A
Xcelris_332	A
Xcelris_333	M
Xcelris_335	A
Xcelris_336	M
Xcelris_339	C
Xcelris_340	A
Xcelris_341	C
Xcelris_36	A
Xcelris_377	A
Xcelris_378	A
Xcelris_379	A
Xcelris_381	M
Xcelris_382	C
Xcelris_383	A
Xcelris_384	M
Xcelris_385	A
Xcelris_392	A
Xcelris_394	A
Xcelris_44	M
Xcelris_4A	A
Xcelris_4B	A
Xcelris_5A	A
Xcelris_5B	A
Xcelris_67	C
Xcelris_6A	A
Xcelris_7	A
Xcelris_77	A
Xcelris_8	C
Xcelris_84	M
Xcelris_8B	A
Xcelris_90	C
Xcelris_97	C
Xcelris_98	A
Xcelris_MT-134	C
Xcelris_MT-18	M
Xcelris_MT-38	A
Xcelris_MT-46	C
Xcelris_MT-48	A
Xcelris_MT-6	M
Xcelris_MT-85	M
Xcelris_MT-9	A
Xcelris_MT-99	C
Y1-f1_L5_I119	A
Y1-f2_L6_I121	C
Y1-f3_L7_I101	A
Y1-m1_L6_I120	A
Y1-m2_L4_I122	M
Y1-m3_L7_I123	M
Y1-m4_I124	A
Y1-m5_L7_I102	M
YPt565	A
YPt601	A
YPt604	A
YPt609	A
YPt610	A
YPt637	M
YPt641	A
YPt648	A
You1	M
You3_L7_I1000005	A
Ypt566	A
Ypt567	A
Ypt568	M
Ypt569	M
Ypt570	A
Ypt571	A
Ypt572	A
Ypt573	A
Ypt574	A
Ypt575	M
Ypt576	A
Ypt577	M
Ypt578	M
Ypt579	M
Ypt580	A
Ypt581	A
Ypt582	M
Ypt583	A
Ypt584	A
Ypt585	M
Ypt586	A
Ypt587	A
Ypt588	A
Ypt589	A
Ypt590	A
Ypt591	A
Ypt592	A
Ypt593	A
Ypt594	A
Ypt595	A
Ypt596	A
Ypt597	A
Ypt598	A
Ypt599	A
Ypt600	A
Ypt602	A
Ypt603	A
Ypt606	A
Ypt607	A
Ypt608	A
Ypt622	M
Ypt623	A
Ypt624	M
Ypt626	M
Ypt638	A
Ypt640	C
Ypt642	A
Ypt643	A
Ypt645	A
Yt516	A
Yt517	A
Yt518	A
Yt519	A
Yt520	A
Yt521	A
Yt522	M
Yt523	A
Yt524	A
Yt525	M
Yt526	A
Yt527	A
Yt528	M
Yt529	A
Yt530	A
Yt531	A
Yt536	A
Yt538	A
Yt539	M
Yt540	M
ZJ1	A
ZJ2	A
ZJ3	A
ZJ4	M
india3	A
india49	A
production	A
yp914ypt	A
ypt169_L3_I011	A
ypt170_L2_I012	A
ypt171_L2_I021	A
ypt173_L2_I022	A
ypt175_L2_I023	A
ypt2041_L6_I002	M
ypt2043_L1_I037	M
ypt2051_L3_I003	M
ypt2053_L6_I004	M
ypt2063_L6_I005	A
ypt2069_L6_I006	M
ypt2071_L1_I038	A
ypt2082	A
ypt2086	A
ypt2087	A
ypt2091	A
ypt2092	A
ypt2093	A
ypt2094	A
ypt2095	A
ypt2098	A
ypt2100	A
ypt2101	A
ypt2103	A
ypt2105	A
ypt2106	M
ypt2107	M
ypt2108	A
ypt2109	M
ypt2110	A
ypt2111	A
ypt2114	A
ypt2115	A
ypt2116	M
ypt2117	M
ypt2118	A
ypt2119	A
ypt2120	A
ypt2121	A
ypt2122	A
ypt2124_L4_I052	A
ypt2126_L3_I053	A
ypt2127_L1_I036	A
ypt2128_L6_I054	M
ypt2144_L6_I055	C
ypt2145_L6_I056	A
ypt2146_L6_I001	A
ypt2163	A
ypt2164	A
ypt2165	A
ypt2166	A
ypt2167	A
ypt2168	A
ypt2169	A
ypt2170	C
ypt2171	A
ypt2172	M
ypt2173	A
ypt2174	A
ypt2175	A
ypt2176	A
ypt2177	A
ypt2178	A
ypt217_L2_I024	A
ypt2184	A
ypt2185	A
ypt2186	A
ypt2187	A
ypt2189	M
ypt2190	A
ypt2191	A
ypt219_L3_I025	M
ypt2200	M
ypt2201	M
ypt2205	A
ypt2209	A
ypt220_L2_I026	A
ypt2214	A
ypt2215	A
ypt2216	A
ypt2217	A
ypt2218	A
ypt2219	A
ypt221_L3_I042	A
ypt2220	A
ypt2221	A
ypt2222	A
ypt222_L3_I027	M
ypt2437	A
ypt2438	A
ypt2439	A
ypt2440	A
ypt2441	A
ypt2442	A
ypt2443	A
ypt2444	A
ypt2445	A
ypt2446	A
ypt2447	A
ypt2448	A
ypt2449	A
ypt2454	A
ypt2459	A
ypt2468	A
ypt2496	A
ypt2497	A
ypt2498	A
ypt2499	A
ypt2500	M
ypt2503	A
ypt2504	A
ypt2507	A
ypt2512	A
ypt2516	A
ypt2521	A
ypt2523	A
ypt2534	A
ypt2541	A
ypt2543	A
ypt2544	A
ypt2545	A
ypt2546	A
ypt2547	A
ypt2552	A
ypt2562	A
ypt2563	A
ypt2569	A
ypt2570	A
ypt2571	A
ypt2572	A
ypt2573	A
ypt2574	A
ypt2575	C
ypt2579	A
ypt258_L3_I028	A
ypt2598	A
ypt259_L2_I029	A
ypt2601	A
ypt2606	A
ypt2608	A
ypt2615	A
ypt2622	A
ypt2623	A
ypt2624	A
ypt2625	M
ypt2627	A
ypt2628	A
ypt2629	A
ypt262_L3_I030	M
ypt2630	A
ypt2636	A
ypt2638	A
ypt263_L3_I031	A
ypt2640	A
ypt2641	A
ypt2643	A
ypt2644	A
ypt2646	A
ypt264_L3_I032	A
ypt2650	M
ypt2653	A
ypt2656	A
ypt2657	A
ypt2658	M
ypt2661	A
ypt2664	M
ypt2665	C
ypt2669	M
ypt2670	M
ypt2671	A
ypt2672	A
ypt2673	A
ypt2678	A
ypt2706	A
ypt2722	A
ypt2724	A
ypt2729	A
ypt2733	A
ypt2739	A
ypt2740	A
ypt2745	A
ypt2746	A
ypt2760	A
ypt2761	A
ypt2765	M
ypt2766	A
ypt2775	A
ypt2780	A
ypt2781	A
ypt2782	A
ypt2783	A
ypt2784	A
ypt2785	A
ypt2786	A
ypt2787	A
ypt2788	A
ypt2789	A
ypt2790	A
ypt2791	A
ypt2792	A
ypt2799	A
ypt2800	A
ypt2808	A
ypt2810	A
ypt2812	A
ypt2813	A
ypt2814	A
ypt2815	A
ypt2816	A
ypt2817	A
ypt2819	A
ypt2821	A
ypt2822	A
ypt2823	A
ypt2824	A
ypt2825	A
ypt2826	A
ypt2827	A
ypt2828	A
ypt2831	C
ypt2832	A
ypt2842	A
ypt2843	A
ypt2849	A
ypt2859	A
ypt2860	A
ypt2861	A
ypt2862	A
ypt2863	A
ypt2871	A
ypt2887	A
ypt2888	A
ypt2889	A
ypt2890_L3_I040	A
ypt2891_L3_I041	A
ypt2892	A
ypt2893_L3_I025	A
ypt2894	A
ypt2895_L3_I026	A
ypt2902	A
ypt2909	A
ypt2910	A
ypt2911	A
ypt2912	A
ypt2918	A
ypt2929	A
ypt2930	M
ypt3001	A
ypt3002	A
ypt3003	A
ypt3004	A
ypt3005	A
ypt3006	A
ypt3007	A
ypt3008	A
ypt3009	A
ypt3010	M
ypt3011	A
ypt3012	A
ypt3016	A
ypt3017	C
ypt3028	A
ypt3038	A
ypt3040	A
ypt3041	A
ypt3042	A
ypt3043	A
ypt3044	M
ypt3045	M
ypt3046	A
ypt3047	A
ypt3050	A
ypt3051	C
ypt3052	M
ypt3061	C
ypt3069	A
ypt3072	M
ypt3133	M
ypt3134	M
ypt3135	A
ypt3136	A
ypt3137	M
ypt3138	A
ypt3139	A
ypt3140	A
ypt3141	M
ypt3142	A
ypt3143	A
ypt3144_L3_I039	A
ypt3145	A
ypt3146	A
ypt3149_L2_I034	A
ypt3150_L8_I023	A
ypt3159_L6_I035	A
ypt3160_L8_I024	A
ypt3162_L6_I036	M
ypt3179_L8_I025	M
ypt3180	M
ypt3181_L7_I038	A
ypt3182_L1_I039	A
ypt3189_L1_I040	A
ypt3190_L8_I026	A
ypt3191_L2_I041	A
ypt3193_L1_I027	A
ypt3195_L1_I042	M
ypt3196_L2_I043	A
ypt3197_L1_I044	A
ypt3198_L2_I045	C
ypt3204_L7_I046	C
ypt3205_L2_I047	M
ypt3206_L1_I048	M
ypt3207_L6_I050	A
ypt3210_L6_I051	A
ypt3211_L6_I052	A
ypt3212_L4_I028	A
ypt3213_L8_I029	C
ypt3219_L1_I030	A
ypt3220_L1_I031	C
ypt3221_L1_I032	A
ypt3222_L1_I033	M
ypt3224_L8_I043	M
ypt3225_L2_I053	A
ypt3226_L3_I044	A
ypt3228-7_L1_I034	C
ypt3229_L8_I045	C
ypt3238_L3_I046	A
ypt3239_L1_I035	A
ypt3241_L6_I055	M
ypt3243_L8_I047	A
ypt3245	M
ypt3246_L6_I050	A
ypt3247_L6_I051	M
ypt3257_L1_I056	M
ypt3258_L3_I001	M
ypt3259_L6_I002	A
ypt3260_L6_I003	A
ypt3262_L7_I005	C
ypt3269_L7_I006	A
ypt3270_L1_I007	C
ypt3271_L7_I008	M
ypt3272_L7_I010	M
ypt3274A_L7_I011	M
ypt3275_L1_I012	C
ypt3276_L7_I021	M
ypt3277_L6_I027	C
ypt3278_L3_I028	C
ypt3289_L8_I021	M
ypt4001	C
ypt47_L2_I029	A
ypt50_L2_I030	A
ypt53_L2_I032	A
ypt55_L1_I033	A
ypt890	M
ypt891	A
ypt896_L2_I047	M
ypt897_L3_I048	C
ypt898	A
ypt899_L6_I051	C
ypt900_L2_I050	A
ypt901_L1_I052	A
ypt902_L1_I053	A
ypt903_L2_I054	A
ypt905_L6_I056	M
ypt906_L3_I001	C
ypt907_L6_I002	A
ypt908_L1_I003	M
ypt909_L5_I004	A
ypt910_L3_I005	A
ypt911_L6_I006	A
ypt912	M
ypt913	A
ypt915	A
ypt917	A
ypt918_L3_I007	A
ypt919_L4_I008	C
ypt920_L5_I010	A
ypt922_L4_I012	A
ypt923_L2_I051	A
ypt924_L3_I021	C
ypt925_L2_I022	M
ypt928	A
ypt929	C
ypt930	C
ypt931	A
ypt932	C
ypt933	M
ypt934x	A
ypt935	C
ypt936	A
ypt937	M
ypt938x	M
ypt939_L5_I025	A
ypt940_L4_I026	C
ypt941_L5_I027	A
ypt942_L7_I028	C
ypt943	A
ypt944_L3_I030	A
ypt945_L4_I031	M
ypt946_L4_I032	M
ypt947_L5_I033	A
ypt948_L2_I034	M
ypt949_L3_I035	A
ypt950_L5_I036	A
ypt951	A
ypt952	A
ypt953	A
ypt954	M
ypt955	A
ypt956x	A
ypt957	M
ypt958	A
ypt959	A
ypt960	A
ypt961	M
ypt962	M
ypt963	A
ypt964	A
ypt965	A
ypt966	A
ypt971	A
ypt972x	M
ypt973_L4_I037	A
ypt974	M
ypt975_L8_I039	M
ypt976_L7_I040	M
ypt977_L2_I041	A
ypt978_L2_I052	A
ypt979_L6_I042	M
ypt980_L3_I043	A
ypt981_L2_I044	A
ypt982_L4_I045	M
ypt984	A
yptwj	A
147209	A
147830	A
GLF_denovo	A
Gallus_Sonneriatii_d	A
Ypt4000	A
Ypt4879	A
Ypt4880	A

4. Population Genetics Analyses

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Population	Sample #	Allele:Frequency	Genotype:Frequency
Afghan	11	A:1.00; C:0.00;	AA:1.00;
Beijing	11	A:0.73; C:0.27;	AA:0.55; CC:0.09; AC:0.36;
Bengal	15	A:0.93; C:0.07;	AA:0.87; AC:0.13;
Cornish_UK	1	A:1.00; C:0.00;	AA:1.00;
Europe_egg	13	A:1.00; C:0.00;	AA:1.00;
Europe_meat	4	A:1.00; C:0.00;	AA:1.00;
Gallus_lafayetii	4	A:0; C:0;	NN:;
Gallus_sonnerattii	3	A:1.00; C:0.00;	AA:1.00;
G.g.bankiva	4	A:1.00; C:0.00;	AA:1.00;
G.g.gallus	6	A:1.00; C:0.00;	AA:1.00;
G.g.jabouillei	27	A:0.46; C:0.54;	AA:0.31; CC:0.38; AC:0.31;
G.g.murghi	68	A:0.52; C:0.48;	CC:0.33; AC:0.30; AA:0.38;
G.g.spadiceus	36	A:0.75; C:0.25;	AA:0.66; AC:0.19; CC:0.16;
G.g.spadiceus_Thai	9	A:0.67; C:0.33;	AC:0.44; AA:0.44; CC:0.11;
Guangxi	6	A:0.50; C:0.50;	AC:0.33; AA:0.33; CC:0.33;
Guangzhou	6	A:1.00; C:0.00;	AA:1.00;
G.varius	12	A:1.00; C:0.00;	AA:1.00;
Hainan	1	A:1.00; C:0.00;	AA:1.00;
Henan	8	A:0.50; C:0.50;	AC:0.14; CC:0.43; AA:0.43;
India	52	A:0.92; C:0.08;	AA:0.88; AC:0.08; CC:0.04;
Indonesia	36	A:0.92; C:0.08;	AA:0.86; CC:0.03; AC:0.11;
Iran	182	A:0.92; C:0.08;	AA:0.86; AC:0.12; CC:0.02;
Jiangsu	10	A:0.50; C:0.50;	CC:0.22; AC:0.56; AA:0.22;
Jiangxi	30	A:0.74; C:0.26;	CC:0.10; AC:0.31; AA:0.59;
Liaoning	8	A:1.00; C:0.00;	AA:1.00;
Pakistan	37	A:0.93; C:0.07;	AA:0.86; AC:0.14;
Rhode_USA	1	A:1.00; C:0.00;	AA:1.00;
Shandong	18	A:0.71; C:0.29;	AC:0.12; AA:0.65; CC:0.24;
Shanxi	8	A:0.81; C:0.19;	AA:0.75; AC:0.12; CC:0.12;
Srilanka	7	A:0.79; C:0.21;	AA:0.71; AC:0.14; CC:0.14;
Taiwan	1	A:1.00; C:0.00;	AA:1.00;
Thailand	6	A:0.83; C:0.17;	AA:0.67; AC:0.33;
Tibet	113	A:0.69; C:0.31;	AA:0.52; AC:0.34; CC:0.15;
Vietnan	7	A:0.64; C:0.36;	AC:0.71; AA:0.29;
WhitePlymouth_USA	1	A:1.00; C:0.00;	AA:1.00;
Xinjiang	30	A:0.87; C:0.13;	AA:0.80; CC:0.07; AC:0.13;
Yuanbao	24	A:0.92; C:0.08;	AA:0.83; AC:0.17;
Yunnan	49	A:0.87; C:0.13;	AA:0.74; AC:0.26;

5. Genotype-Phenotype Information

Chr	Position	RSID	Species/Population	Trait	Effect Allele	P-value	Reported Gene(s) Symbol	PMID

ChickenSD / RefSNPs / ggaS30695121

Detail information of ggaS30695121

1.General Information

2.Gene information

3.Individual Genotype

4. Population Genetics Analyses

5. Genotype-Phenotype Information

ChickenSD / RefSNPs /　ggaS30695121