ChickenSD

ChickenSD / RefSNPs /　ggaS21825972

Detail information of ggaS21825972

1.General Information

Reference SNP ID: ggaS21825972
Chromosome: chr7
Position: 32
RefSNP Alleles C/T
NCBI ss link  

2.Gene information

Var ID Gene ID Transcript ID Gene Symbol Variant Effect Biotype cDNA Position Allele Change Protein ID Protein Position Residue Change
ggaS21825972 ENSGALG00000029149 - - downstream_gene_variant - 0 - => - - 0 - => -

3.Individual Genotype

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Individual Genotype
100S T
101S_L1_I028 C
102S_L3_I037 T
105S_L3_I039 T
107S_L2_I031 C
108S_L6_I032 C
10S_L1_I052 C
110S_L4_I034 C
111S_L3_I047 C
113S_L1_I036 Y
114S_L3_I037 C
116S_L6_I038 C
117S_L2_I039 C
118S_L4_I040 C
11S C
120S_L1_I041 C
122S_L4_I043 T
124S_L2_I048 T
125S_L3_I050 C
126S_L3_I051 T
127S_L2_I045 C
128S_L1_I042 C
129S_L3_I043 C
12S_L4_I011 C
130S_L4_I044 Y
131S_L2_I045 T
132S_L2_I046 C
133S_L8_I046 T
134S_L2_I047 C
135S_L3_I048 C
13S_L7_I012 C
14S_L2_I021 C
16S_L5_I023 C
17S_L3_I024 C
18833 C
18S_L7_I025 C
19297 C
19912 Y
20736 C
20S_L7_I027 T
22S_L6_I029 C
23S_L2_I030 T
24S_L4_I031 C
29S_L3_I036 C
30S_L2_I037 C
31S_L3_I038 T
35S_L5_I041 C
36S_L5_I042 T
39S_L6_I053 C
40S_L2_I054 C
42S_L3_I055 Y
43S C
44S_L4_I001 T
45S_L2_I002 C
46S_L4_I003 C
47S_L3_I046 T
48S_L1_I004 T
4S_L4_I004 Y
50S_L1_I047 C
52S_L2_I050 T
53S_L2_I006 T
54S_L2_I007 T
55S_L1_I008 C
56S_L1_I010 C
57S_L3_I046 C
58S_L4_I051 C
5S C
60S_L5_I053 Y
61S_L8_I054 C
62S_L8_I055 Y
63S_L5_I056 C
66S_L2_I003 C
67S_L1_I011 C
68S_L3_I012 C
69S C
6S C
71S_L3_I023 Y
72S_L1_I024 C
73S_L1_I025 Y
74S_L4_I026 T
76S_L1_I028 C
77S_L4_I029 C
78S_L4_I030 Y
79S_L2_I031 C
7S_L4_I007 C
80S_L3_I004 C
81S_L1_I005 C
82S C
83S_L3_I033 C
84S_L5_I006 C
85S_L5_I007 C
86S_L5_I008 T
89S_L6_I012 C
90S_L4_I021 T
92S_L5_I023 T
93S_L7_I024 T
95S_L8_I025 C
96S_L4_I026 C
97S_L8_I027 C
98S_L3_I034 C
99S_L2_I035 Y
9S C
A1 C
A12 Y
A14 C
A3 T
A8 T
BKL2 T
BLB1_L2_I007 C
BLB2_L2_I008 C
BLO1 C
BLO15 C
BLO2 C
BOJA2 C
BYW5_L2_I010 C
GVF C
India1 C
India11 C
India13 C
India15 C
India17 C
India23 C
India25 C
India27 C
India29 Y
India33 T
India35 C
India43 C
India45 C
India47 C
India5 C
India55 C
India57 C
India59 C
India61 C
India7 C
India9 C
L2 T
N1 C
N11 C
N13 C
N18 Y
N3 C
N5 C
N7 C
N8 C
S-f1_L4_I106 C
S-f2_I107 C
S-f3_I108 C
S-f4_L4_I109 C
S-m1_I101 C
S-m2_I102 C
S-m3_I103 C
S-m4_L2_I104 C
S-m5_I105 C
S6 C
SAMN02486156 C
SAMN02486157 C
SAMN02486158 C
SAMN02486159 Y
SAMN02486160 Y
SAMN02486161 C
SAMN02486163 C
SAMN02486164 Y
SAMN02486165 C
SAMN02486166 C
SAMN02486167 T
Silkia C
T2 C
T3 C
T5 C
TD1 T
TD12 C
TD15 C
TD22 T
TD30 C
TD6 T
TD9 C
Tibet C
Xcelris_101 C
Xcelris_104 C
Xcelris_105 T
Xcelris_10A C
Xcelris_10B C
Xcelris_113 C
Xcelris_12 C
Xcelris_120 C
Xcelris_127 T
Xcelris_128 T
Xcelris_12A C
Xcelris_13B C
Xcelris_14 C
Xcelris_144 C
Xcelris_14A Y
Xcelris_14B C
Xcelris_174 C
Xcelris_176 C
Xcelris_1B Y
Xcelris_219 Y
Xcelris_221 C
Xcelris_222 C
Xcelris_224 C
Xcelris_226 C
Xcelris_227 T
Xcelris_275 C
Xcelris_278 C
Xcelris_282 C
Xcelris_2A C
Xcelris_2B C
Xcelris_332 C
Xcelris_333 C
Xcelris_335 C
Xcelris_336 T
Xcelris_340 C
Xcelris_377 C
Xcelris_378 Y
Xcelris_380 Y
Xcelris_381 C
Xcelris_382 Y
Xcelris_383 T
Xcelris_385 C
Xcelris_44 T
Xcelris_5B C
Xcelris_67 C
Xcelris_6B C
Xcelris_77 C
Xcelris_84 C
Xcelris_8A T
Xcelris_90 C
Xcelris_98 C
Xcelris_MT-6 C
Y1-f1_L5_I119 C
Y1-f2_L6_I121 C
Y1-f3_L7_I101 C
Y1-m2_L4_I122 C
Y1-m3_L7_I123 C
Y1-m4_I124 C
Y1-m5_L7_I102 C
YPt565 C
YPt601 C
YPt604 C
YPt610 C
YPt637 C
YPt641 C
YPt648 C
You1 T
You3_L7_I1000005 C
Ypt566 C
Ypt567 C
Ypt568 C
Ypt569 C
Ypt570 C
Ypt571 C
Ypt572 C
Ypt574 C
Ypt575 Y
Ypt576 C
Ypt577 Y
Ypt578 Y
Ypt579 C
Ypt580 C
Ypt581 C
Ypt582 C
Ypt583 C
Ypt584 C
Ypt585 C
Ypt586 C
Ypt587 C
Ypt588 C
Ypt589 Y
Ypt590 C
Ypt591 C
Ypt593 C
Ypt594 C
Ypt596 C
Ypt597 C
Ypt598 C
Ypt599 C
Ypt600 C
Ypt602 C
Ypt603 Y
Ypt606 C
Ypt607 T
Ypt608 Y
Ypt622 C
Ypt623 C
Ypt626 C
Ypt638 C
Ypt640 C
Ypt642 Y
Ypt643 Y
Ypt645 C
Ypt646 Y
Ypt647 C
Yt516 Y
Yt517 C
Yt518 C
Yt519 C
Yt520 C
Yt521 Y
Yt522 C
Yt523 C
Yt524 C
Yt525 Y
Yt526 C
Yt527 Y
Yt528 Y
Yt529 C
Yt530 C
Yt531 C
Yt536 Y
Yt538 C
Yt539 C
Yt540 Y
ZJ1 C
ZJ2 C
ZJ3 C
ZJ4 C
india3 C
production C
ypt169_L3_I011 T
ypt171_L2_I021 C
ypt2041_L6_I002 C
ypt2043_L1_I037 C
ypt2053_L6_I004 C
ypt2063_L6_I005 Y
ypt2069_L6_I006 C
ypt2086 C
ypt2091 C
ypt2092 C
ypt2093 C
ypt2094 C
ypt2095 C
ypt2098 C
ypt2100 C
ypt2101 C
ypt2102 C
ypt2103 T
ypt2105 Y
ypt2108 C
ypt2109 T
ypt2111 C
ypt2114 C
ypt2116 Y
ypt2117 T
ypt2118 C
ypt2119 T
ypt2121 C
ypt2122 C
ypt2124_L4_I052 C
ypt2145_L6_I056 C
ypt2146_L6_I001 T
ypt2165 T
ypt2168 C
ypt2173 C
ypt2174 C
ypt2176 T
ypt2177 C
ypt2184 C
ypt2185 T
ypt2186 Y
ypt2187 C
ypt2190 C
ypt2191 Y
ypt219_L3_I025 C
ypt2205 C
ypt2209 Y
ypt2216 C
ypt2217 T
ypt2218 T
ypt2219 Y
ypt221_L3_I042 T
ypt2220 C
ypt2221 T
ypt2437 T
ypt2439 C
ypt2440 C
ypt2442 C
ypt2443 C
ypt2444 C
ypt2446 Y
ypt2447 C
ypt2448 C
ypt2449 C
ypt2454 C
ypt2468 C
ypt2496 C
ypt2498 T
ypt2500 T
ypt2503 C
ypt2504 T
ypt2507 C
ypt2512 C
ypt2516 C
ypt2521 C
ypt2523 Y
ypt2534 T
ypt2541 C
ypt2543 T
ypt2544 C
ypt2545 C
ypt2546 C
ypt2547 C
ypt2562 C
ypt2563 C
ypt2569 C
ypt2570 C
ypt2571 C
ypt2572 Y
ypt2575 C
ypt2579 T
ypt2598 C
ypt259_L2_I029 T
ypt2601 C
ypt2623 C
ypt2625 C
ypt2627 T
ypt262_L3_I030 C
ypt2630 T
ypt263_L3_I031 C
ypt2641 C
ypt2644 Y
ypt2646 C
ypt264_L3_I032 T
ypt2650 C
ypt2653 C
ypt2656 T
ypt2657 T
ypt2661 Y
ypt2664 C
ypt2669 T
ypt2670 T
ypt2671 T
ypt2672 C
ypt2673 C
ypt2678 C
ypt2706 C
ypt2724 C
ypt2729 Y
ypt2733 C
ypt2739 Y
ypt2740 C
ypt2760 C
ypt2761 C
ypt2765 C
ypt2766 C
ypt2775 C
ypt2781 Y
ypt2782 C
ypt2783 Y
ypt2784 T
ypt2786 C
ypt2787 C
ypt2788 Y
ypt2789 C
ypt2790 C
ypt2791 C
ypt2792 C
ypt2799 C
ypt2800 C
ypt2808 C
ypt2810 C
ypt2812 T
ypt2815 C
ypt2816 T
ypt2819 T
ypt2821 T
ypt2822 C
ypt2823 C
ypt2824 C
ypt2825 C
ypt2826 Y
ypt2827 C
ypt2828 C
ypt2832 Y
ypt2842 C
ypt2843 T
ypt2849 T
ypt2859 T
ypt2860 C
ypt2861 C
ypt2862 C
ypt2870 C
ypt2871 C
ypt2888 C
ypt2890_L3_I040 C
ypt2891_L3_I041 C
ypt2892 C
ypt2893_L3_I025 C
ypt2894 C
ypt2895_L3_I026 C
ypt2902 C
ypt2911 C
ypt2912 C
ypt2918 C
ypt2929 Y
ypt3001 T
ypt3002 C
ypt3006 C
ypt3007 C
ypt3008 C
ypt3009 C
ypt3011 C
ypt3012 C
ypt3016 C
ypt3017 C
ypt3028 C
ypt3038 C
ypt3040 T
ypt3041 C
ypt3042 C
ypt3043 C
ypt3044 Y
ypt3045 C
ypt3046 C
ypt3047 C
ypt3050 C
ypt3051 C
ypt3052 C
ypt3061 C
ypt3069 C
ypt3072 C
ypt3133 C
ypt3134 C
ypt3135 C
ypt3136 C
ypt3137 C
ypt3138 C
ypt3139 C
ypt3140 C
ypt3141 Y
ypt3142 Y
ypt3143 C
ypt3145 C
ypt3146 Y
ypt3149_L2_I034 C
ypt3150_L8_I023 C
ypt3159_L6_I035 T
ypt3160_L8_I024 C
ypt3162_L6_I036 C
ypt3179_L8_I025 C
ypt3180 C
ypt3181_L7_I038 T
ypt3182_L1_I039 C
ypt3189_L1_I040 C
ypt3190_L8_I026 T
ypt3193_L1_I027 C
ypt3195_L1_I042 T
ypt3196_L2_I043 C
ypt3197_L1_I044 C
ypt3204_L7_I046 C
ypt3205_L2_I047 C
ypt3206_L1_I048 T
ypt3207_L6_I050 C
ypt3210_L6_I051 C
ypt3212_L4_I028 C
ypt3220_L1_I031 C
ypt3221_L1_I032 C
ypt3222_L1_I033 T
ypt3224_L8_I043 T
ypt3226_L3_I044 C
ypt3238_L3_I046 C
ypt3239_L1_I035 C
ypt3245 C
ypt3246_L6_I050 Y
ypt3247_L6_I051 C
ypt3257_L1_I056 C
ypt3259_L6_I002 C
ypt3261_L7_I004 Y
ypt3262_L7_I005 Y
ypt3269_L7_I006 C
ypt3270_L1_I007 C
ypt3271_L7_I008 C
ypt3272_L7_I010 C
ypt3274A_L7_I011 T
ypt3275_L1_I012 C
ypt3277_L6_I027 C
ypt4001 C
ypt47_L2_I029 C
ypt50_L2_I030 C
ypt55_L1_I033 C
ypt890 C
ypt891 C
ypt896_L2_I047 T
ypt898 C
ypt901_L1_I052 C
ypt902_L1_I053 Y
ypt904_L4_I055 Y
ypt905_L6_I056 C
ypt906_L3_I001 Y
ypt907_L6_I002 T
ypt909_L5_I004 C
ypt912 T
ypt918_L3_I007 C
ypt919_L4_I008 C
ypt921_L8_I011 C
ypt923_L2_I051 C
ypt925_L2_I022 C
ypt926_L2_I023 T
ypt929 C
ypt931 C
ypt937 C
ypt941_L5_I027 C
ypt942_L7_I028 C
ypt943 C
ypt945_L4_I031 C
ypt946_L4_I032 C
ypt947_L5_I033 C
ypt948_L2_I034 C
ypt949_L3_I035 C
ypt950_L5_I036 C
ypt951 C
ypt953 C
ypt954 C
ypt955 C
ypt956x C
ypt957 T
ypt958 C
ypt959 C
ypt960 C
ypt961 C
ypt962 C
ypt963 C
ypt964 C
ypt965 C
ypt971 C
ypt972x Y
ypt973_L4_I037 C
ypt974 Y
ypt975_L8_I039 Y
ypt976_L7_I040 C
ypt977_L2_I041 C
ypt978_L2_I052 C
ypt979_L6_I042 C
ypt980_L3_I043 C
ypt981_L2_I044 C
ypt982_L4_I045 C
ypt984 C
yptwj C
147209 C
147830 Y
GLF_denovo C
Gallus_Sonneriatii_d C
Ypt4879 C
Ypt4880 C

4. Population Genetics Analyses

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Population Sample # Allele:Frequency Genotype:Frequency
Afghan 11 C:0.93; T:0.07; CC:0.86; CT:0.14;
Beijing 11 C:0.90; T:0.10; CC:0.90; TT:0.10;
Bengal 15 C:0.89; T:0.11; TT:0.11; CC:0.89;
Cornish_UK 1 C:1.00; T:0.00; CC:1.00;
Europe_egg 13 C:0.60; T:0.40; CC:0.60; TT:0.40;
Europe_meat 4 C:1.00; T:0.00; CC:1.00;
Gallus_lafayetii 4 C:0; T:0; NN:;
Gallus_sonnerattii 3 C:1.00; T:0.00; CC:1.00;
G.g.bankiva 4 C:0.17; T:0.83; TT:0.67; CT:0.33;
G.g.gallus 6 C:0.83; T:0.17; TT:0.17; CC:0.83;
G.g.jabouillei 27 C:0.92; T:0.08; CC:0.88; CT:0.08; TT:0.04;
G.g.murghi 68 C:0.78; T:0.22; CC:0.73; TT:0.16; CT:0.11;
G.g.spadiceus 36 C:0.90; T:0.10; CC:0.85; CT:0.12; TT:0.04;
G.g.spadiceus_Thai 9 C:0.64; T:0.36; CT:0.43; CC:0.43; TT:0.14;
Guangxi 6 C:0.33; T:0.67; TT:0.67; CC:0.33;
Guangzhou 6 C:0.75; T:0.25; CC:0.50; CT:0.50;
G.varius 12 C:1.00; T:0.00; CC:1.00;
Hainan 1 C:1.00; T:0.00; CC:1.00;
Henan 8 C:0.33; T:0.67; CC:0.33; TT:0.67;
India 52 C:0.87; T:0.13; CC:0.83; CT:0.09; TT:0.09;
Indonesia 36 C:0.65; T:0.35; TT:0.25; CC:0.55; CT:0.20;
Iran 182 C:0.68; T:0.32; TT:0.25; CC:0.61; CT:0.13;
Jiangsu 10 C:1.00; T:0.00; CC:1.00;
Jiangxi 30 C:0.95; T:0.05; CC:0.95; TT:0.05;
Liaoning 8 C:0.33; T:0.67; CC:0.33; TT:0.67;
Pakistan 37 C:0.81; T:0.19; CC:0.76; CT:0.10; TT:0.14;
Rhode_USA 1 C:0.50; T:0.50; CT:1.00;
Shandong 18 C:0.59; T:0.41; CT:0.27; CC:0.45; TT:0.27;
Shanxi 8 C:0.75; T:0.25; CC:0.75; TT:0.25;
Srilanka 7 C:0.67; T:0.33; CC:0.67; TT:0.33;
Taiwan 1 C:0.00; T:1.00; TT:1.00;
Thailand 6 C:0.88; T:0.12; CC:0.75; CT:0.25;
Tibet 113 C:0.73; T:0.27; CT:0.20; CC:0.63; TT:0.17;
Vietnan 7 C:0.90; T:0.10; CC:0.80; CT:0.20;
WhitePlymouth_USA 1 C:0.00; T:1.00; TT:1.00;
Xinjiang 30 C:0.69; T:0.31; CC:0.65; CT:0.08; TT:0.27;
Yuanbao 24 C:0.95; T:0.05; CC:0.91; CT:0.09;
Yunnan 49 C:0.81; T:0.19; CC:0.71; CT:0.20; TT:0.09;

5. Genotype-Phenotype Information

Chr Position RSID Species/Population Trait Effect Allele P-value Reported Gene(s) Symbol PMID