ChickenSD / RefSNPs / ggaS21825971
Detail information of ggaS21825971
1.General Information
Reference SNP ID: | ggaS21825971 |
Chromosome: | chr7 |
Position: | 31 |
RefSNP Alleles | C/T |
NCBI ss link |
2.Gene information
Var ID | Gene ID | Transcript ID | Gene Symbol | Variant Effect | Biotype | cDNA Position | Allele Change | Protein ID | Protein Position | Residue Change |
---|---|---|---|---|---|---|---|---|---|---|
ggaS21825971 | ENSGALG00000029149 | - | - | downstream_gene_variant | - | 0 | - => - | - | 0 | - => - |
3.Individual Genotype
Individual | Genotype |
---|---|
100S | C |
101S_L1_I028 | C |
102S_L3_I037 | C |
105S_L3_I039 | C |
107S_L2_I031 | C |
108S_L6_I032 | C |
10S_L1_I052 | C |
110S_L4_I034 | Y |
111S_L3_I047 | C |
113S_L1_I036 | C |
114S_L3_I037 | C |
116S_L6_I038 | C |
117S_L2_I039 | C |
118S_L4_I040 | C |
11S | C |
120S_L1_I041 | C |
122S_L4_I043 | C |
124S_L2_I048 | C |
125S_L3_I050 | C |
126S_L3_I051 | C |
127S_L2_I045 | C |
128S_L1_I042 | C |
129S_L3_I043 | C |
12S_L4_I011 | C |
130S_L4_I044 | C |
131S_L2_I045 | C |
132S_L2_I046 | C |
133S_L8_I046 | C |
134S_L2_I047 | C |
135S_L3_I048 | C |
13S_L7_I012 | C |
14S_L2_I021 | C |
16S_L5_I023 | C |
17S_L3_I024 | C |
18833 | C |
18S_L7_I025 | C |
19297 | C |
19912 | C |
20736 | C |
20S_L7_I027 | C |
22S_L6_I029 | C |
23S_L2_I030 | C |
24S_L4_I031 | C |
29S_L3_I036 | C |
30S_L2_I037 | C |
31S_L3_I038 | C |
35S_L5_I041 | C |
36S_L5_I042 | C |
39S_L6_I053 | C |
40S_L2_I054 | C |
42S_L3_I055 | C |
43S | C |
44S_L4_I001 | C |
45S_L2_I002 | C |
46S_L4_I003 | C |
47S_L3_I046 | C |
48S_L1_I004 | C |
4S_L4_I004 | C |
50S_L1_I047 | C |
52S_L2_I050 | C |
53S_L2_I006 | C |
54S_L2_I007 | C |
55S_L1_I008 | C |
56S_L1_I010 | C |
57S_L3_I046 | T |
58S_L4_I051 | C |
5S | C |
60S_L5_I053 | C |
61S_L8_I054 | C |
62S_L8_I055 | C |
63S_L5_I056 | C |
66S_L2_I003 | C |
67S_L1_I011 | C |
68S_L3_I012 | C |
69S | C |
6S | C |
71S_L3_I023 | C |
72S_L1_I024 | C |
73S_L1_I025 | C |
74S_L4_I026 | C |
76S_L1_I028 | C |
77S_L4_I029 | C |
78S_L4_I030 | C |
79S_L2_I031 | C |
7S_L4_I007 | C |
80S_L3_I004 | C |
81S_L1_I005 | C |
82S | C |
83S_L3_I033 | C |
84S_L5_I006 | C |
85S_L5_I007 | C |
86S_L5_I008 | C |
89S_L6_I012 | C |
90S_L4_I021 | C |
92S_L5_I023 | C |
93S_L7_I024 | C |
95S_L8_I025 | C |
96S_L4_I026 | C |
97S_L8_I027 | C |
98S_L3_I034 | C |
99S_L2_I035 | C |
9S | C |
A1 | C |
A12 | C |
A14 | C |
A3 | C |
A8 | C |
BKL2 | C |
BLB1_L2_I007 | C |
BLB2_L2_I008 | C |
BLO1 | C |
BLO15 | C |
BLO2 | C |
BOJA2 | C |
BYW5_L2_I010 | C |
GVF | C |
India1 | C |
India11 | C |
India13 | C |
India15 | C |
India17 | C |
India23 | C |
India25 | C |
India27 | C |
India29 | C |
India33 | C |
India35 | C |
India43 | C |
India45 | C |
India47 | C |
India5 | C |
India55 | C |
India57 | C |
India59 | C |
India61 | C |
India7 | C |
India9 | C |
L2 | C |
N1 | C |
N11 | C |
N13 | C |
N18 | C |
N3 | C |
N5 | C |
N7 | C |
N8 | C |
S-f1_L4_I106 | C |
S-f2_I107 | Y |
S-f3_I108 | T |
S-f4_L4_I109 | C |
S-m1_I101 | C |
S-m2_I102 | Y |
S-m3_I103 | C |
S-m4_L2_I104 | C |
S-m5_I105 | C |
S6 | C |
SAMN02486156 | C |
SAMN02486157 | C |
SAMN02486158 | C |
SAMN02486159 | C |
SAMN02486160 | C |
SAMN02486161 | C |
SAMN02486163 | C |
SAMN02486164 | C |
SAMN02486165 | C |
SAMN02486166 | C |
SAMN02486167 | C |
Silkia | C |
T2 | C |
T3 | C |
T5 | C |
TD1 | C |
TD12 | C |
TD15 | C |
TD22 | C |
TD30 | C |
TD6 | C |
TD9 | C |
Tibet | C |
Xcelris_105 | C |
Xcelris_10A | C |
Xcelris_10B | C |
Xcelris_113 | C |
Xcelris_12 | C |
Xcelris_128 | C |
Xcelris_13B | C |
Xcelris_14 | C |
Xcelris_144 | C |
Xcelris_14A | C |
Xcelris_14B | C |
Xcelris_174 | C |
Xcelris_176 | C |
Xcelris_1B | C |
Xcelris_219 | C |
Xcelris_221 | C |
Xcelris_224 | C |
Xcelris_226 | C |
Xcelris_227 | C |
Xcelris_275 | C |
Xcelris_278 | C |
Xcelris_282 | C |
Xcelris_2B | C |
Xcelris_331 | C |
Xcelris_332 | C |
Xcelris_335 | C |
Xcelris_336 | C |
Xcelris_339 | C |
Xcelris_340 | C |
Xcelris_341 | C |
Xcelris_378 | C |
Xcelris_380 | C |
Xcelris_381 | C |
Xcelris_382 | C |
Xcelris_383 | C |
Xcelris_385 | C |
Xcelris_5B | C |
Xcelris_67 | C |
Xcelris_6B | C |
Xcelris_77 | C |
Xcelris_84 | C |
Xcelris_8A | C |
Xcelris_8B | C |
Xcelris_90 | C |
Xcelris_98 | C |
Xcelris_MT-6 | C |
Y1-f1_L5_I119 | C |
Y1-f2_L6_I121 | Y |
Y1-f3_L7_I101 | T |
Y1-m2_L4_I122 | C |
Y1-m3_L7_I123 | C |
Y1-m4_I124 | C |
Y1-m5_L7_I102 | C |
YPt565 | C |
YPt601 | C |
YPt604 | C |
YPt610 | C |
YPt637 | C |
YPt641 | C |
YPt648 | C |
You1 | C |
You3_L7_I1000005 | C |
Ypt566 | C |
Ypt567 | C |
Ypt568 | C |
Ypt569 | Y |
Ypt570 | C |
Ypt571 | C |
Ypt572 | C |
Ypt574 | C |
Ypt575 | C |
Ypt576 | C |
Ypt577 | C |
Ypt578 | C |
Ypt579 | Y |
Ypt580 | T |
Ypt581 | T |
Ypt582 | T |
Ypt583 | C |
Ypt584 | Y |
Ypt585 | Y |
Ypt586 | C |
Ypt587 | Y |
Ypt588 | Y |
Ypt589 | C |
Ypt590 | Y |
Ypt591 | C |
Ypt593 | C |
Ypt594 | Y |
Ypt596 | Y |
Ypt597 | Y |
Ypt598 | Y |
Ypt599 | C |
Ypt600 | T |
Ypt602 | C |
Ypt603 | C |
Ypt606 | C |
Ypt607 | C |
Ypt608 | C |
Ypt622 | C |
Ypt623 | C |
Ypt626 | T |
Ypt638 | C |
Ypt640 | C |
Ypt642 | C |
Ypt643 | C |
Ypt645 | C |
Ypt646 | C |
Ypt647 | C |
Yt516 | C |
Yt517 | C |
Yt518 | C |
Yt519 | Y |
Yt520 | C |
Yt521 | C |
Yt522 | C |
Yt523 | C |
Yt524 | C |
Yt525 | C |
Yt526 | C |
Yt527 | C |
Yt528 | C |
Yt529 | C |
Yt530 | C |
Yt531 | C |
Yt536 | C |
Yt538 | C |
Yt539 | C |
Yt540 | C |
ZJ1 | C |
ZJ2 | C |
ZJ3 | C |
ZJ4 | C |
india3 | C |
production | C |
ypt169_L3_I011 | C |
ypt171_L2_I021 | C |
ypt2041_L6_I002 | C |
ypt2043_L1_I037 | C |
ypt2053_L6_I004 | C |
ypt2063_L6_I005 | C |
ypt2069_L6_I006 | C |
ypt2086 | C |
ypt2091 | C |
ypt2092 | C |
ypt2093 | C |
ypt2094 | C |
ypt2095 | C |
ypt2098 | C |
ypt2100 | C |
ypt2101 | C |
ypt2102 | C |
ypt2103 | C |
ypt2105 | C |
ypt2108 | C |
ypt2109 | C |
ypt2111 | T |
ypt2114 | C |
ypt2116 | C |
ypt2117 | C |
ypt2118 | C |
ypt2119 | C |
ypt2121 | C |
ypt2122 | C |
ypt2124_L4_I052 | C |
ypt2145_L6_I056 | C |
ypt2146_L6_I001 | C |
ypt2165 | C |
ypt2168 | C |
ypt2172 | C |
ypt2173 | C |
ypt2174 | C |
ypt2176 | C |
ypt2177 | C |
ypt2184 | C |
ypt2185 | C |
ypt2186 | C |
ypt2187 | C |
ypt2190 | T |
ypt2191 | C |
ypt219_L3_I025 | C |
ypt2205 | C |
ypt2209 | C |
ypt2216 | C |
ypt2217 | C |
ypt2218 | C |
ypt2219 | C |
ypt221_L3_I042 | C |
ypt2220 | C |
ypt2221 | C |
ypt2437 | C |
ypt2439 | C |
ypt2440 | C |
ypt2442 | C |
ypt2443 | Y |
ypt2444 | C |
ypt2446 | C |
ypt2447 | C |
ypt2448 | C |
ypt2449 | C |
ypt2454 | C |
ypt2468 | C |
ypt2496 | C |
ypt2498 | C |
ypt2500 | C |
ypt2503 | C |
ypt2504 | C |
ypt2507 | C |
ypt2512 | C |
ypt2516 | C |
ypt2521 | C |
ypt2523 | C |
ypt2534 | C |
ypt2541 | C |
ypt2543 | C |
ypt2544 | C |
ypt2545 | C |
ypt2546 | C |
ypt2547 | C |
ypt2562 | C |
ypt2563 | C |
ypt2569 | C |
ypt2570 | C |
ypt2571 | C |
ypt2572 | C |
ypt2575 | C |
ypt2579 | C |
ypt2598 | C |
ypt259_L2_I029 | C |
ypt2601 | C |
ypt2623 | C |
ypt2625 | C |
ypt2627 | C |
ypt262_L3_I030 | C |
ypt2630 | C |
ypt263_L3_I031 | C |
ypt2641 | C |
ypt2644 | C |
ypt2646 | C |
ypt264_L3_I032 | C |
ypt2650 | C |
ypt2653 | C |
ypt2656 | C |
ypt2657 | C |
ypt2661 | C |
ypt2664 | C |
ypt2669 | C |
ypt2670 | C |
ypt2671 | C |
ypt2672 | C |
ypt2673 | C |
ypt2678 | T |
ypt2706 | C |
ypt2724 | C |
ypt2729 | C |
ypt2733 | C |
ypt2739 | C |
ypt2740 | C |
ypt2760 | C |
ypt2761 | C |
ypt2765 | C |
ypt2766 | C |
ypt2775 | C |
ypt2781 | C |
ypt2782 | C |
ypt2783 | C |
ypt2784 | C |
ypt2786 | C |
ypt2787 | C |
ypt2788 | C |
ypt2789 | C |
ypt2790 | C |
ypt2791 | C |
ypt2792 | C |
ypt2799 | C |
ypt2800 | C |
ypt2808 | C |
ypt2810 | C |
ypt2812 | C |
ypt2815 | C |
ypt2816 | C |
ypt2819 | C |
ypt2821 | C |
ypt2822 | C |
ypt2823 | C |
ypt2824 | C |
ypt2825 | C |
ypt2826 | C |
ypt2827 | C |
ypt2828 | C |
ypt2832 | C |
ypt2842 | C |
ypt2843 | C |
ypt2849 | C |
ypt2859 | C |
ypt2860 | C |
ypt2861 | C |
ypt2862 | C |
ypt2870 | C |
ypt2871 | C |
ypt2888 | C |
ypt2890_L3_I040 | C |
ypt2891_L3_I041 | C |
ypt2892 | C |
ypt2893_L3_I025 | C |
ypt2894 | C |
ypt2895_L3_I026 | C |
ypt2902 | C |
ypt2911 | C |
ypt2912 | C |
ypt2918 | C |
ypt2929 | C |
ypt3001 | C |
ypt3002 | C |
ypt3006 | C |
ypt3007 | C |
ypt3008 | C |
ypt3009 | C |
ypt3011 | C |
ypt3012 | C |
ypt3016 | C |
ypt3017 | C |
ypt3028 | C |
ypt3038 | C |
ypt3040 | C |
ypt3041 | C |
ypt3042 | C |
ypt3043 | C |
ypt3044 | C |
ypt3045 | C |
ypt3046 | C |
ypt3047 | C |
ypt3050 | C |
ypt3051 | C |
ypt3052 | Y |
ypt3061 | T |
ypt3069 | C |
ypt3072 | C |
ypt3133 | Y |
ypt3134 | C |
ypt3135 | C |
ypt3136 | C |
ypt3137 | C |
ypt3138 | C |
ypt3139 | C |
ypt3140 | C |
ypt3141 | C |
ypt3142 | C |
ypt3143 | C |
ypt3145 | C |
ypt3146 | C |
ypt3149_L2_I034 | C |
ypt3150_L8_I023 | C |
ypt3159_L6_I035 | C |
ypt3160_L8_I024 | C |
ypt3162_L6_I036 | C |
ypt3179_L8_I025 | C |
ypt3180 | C |
ypt3181_L7_I038 | C |
ypt3182_L1_I039 | C |
ypt3189_L1_I040 | C |
ypt3190_L8_I026 | C |
ypt3193_L1_I027 | C |
ypt3195_L1_I042 | C |
ypt3196_L2_I043 | C |
ypt3197_L1_I044 | C |
ypt3206_L1_I048 | C |
ypt3207_L6_I050 | C |
ypt3210_L6_I051 | C |
ypt3212_L4_I028 | C |
ypt3220_L1_I031 | C |
ypt3224_L8_I043 | C |
ypt3238_L3_I046 | C |
ypt3239_L1_I035 | C |
ypt3245 | C |
ypt3246_L6_I050 | C |
ypt3247_L6_I051 | C |
ypt3257_L1_I056 | C |
ypt3259_L6_I002 | C |
ypt3261_L7_I004 | C |
ypt3262_L7_I005 | C |
ypt3269_L7_I006 | C |
ypt3271_L7_I008 | C |
ypt3272_L7_I010 | C |
ypt3274A_L7_I011 | C |
ypt3275_L1_I012 | C |
ypt3277_L6_I027 | C |
ypt4001 | C |
ypt50_L2_I030 | C |
ypt53_L2_I032 | C |
ypt55_L1_I033 | C |
ypt891 | C |
ypt896_L2_I047 | C |
ypt897_L3_I048 | C |
ypt898 | C |
ypt899_L6_I051 | C |
ypt902_L1_I053 | C |
ypt904_L4_I055 | C |
ypt905_L6_I056 | C |
ypt906_L3_I001 | C |
ypt907_L6_I002 | C |
ypt909_L5_I004 | C |
ypt918_L3_I007 | C |
ypt919_L4_I008 | C |
ypt921_L8_I011 | C |
ypt923_L2_I051 | C |
ypt925_L2_I022 | C |
ypt926_L2_I023 | C |
ypt928 | C |
ypt929 | C |
ypt931 | C |
ypt937 | C |
ypt941_L5_I027 | C |
ypt942_L7_I028 | Y |
ypt943 | T |
ypt945_L4_I031 | C |
ypt946_L4_I032 | C |
ypt947_L5_I033 | C |
ypt948_L2_I034 | C |
ypt949_L3_I035 | C |
ypt950_L5_I036 | C |
ypt951 | C |
ypt953 | C |
ypt954 | C |
ypt955 | C |
ypt956x | C |
ypt957 | C |
ypt958 | C |
ypt959 | C |
ypt960 | C |
ypt961 | C |
ypt962 | Y |
ypt963 | C |
ypt964 | C |
ypt965 | C |
ypt971 | C |
ypt972x | C |
ypt973_L4_I037 | C |
ypt974 | C |
ypt975_L8_I039 | C |
ypt976_L7_I040 | Y |
ypt977_L2_I041 | T |
ypt978_L2_I052 | T |
ypt979_L6_I042 | T |
ypt980_L3_I043 | C |
ypt981_L2_I044 | Y |
ypt982_L4_I045 | Y |
ypt984 | C |
yptwj | Y |
147209 | Y |
147830 | C |
GLF_denovo | Y |
Gallus_Sonneriatii_d | C |
Ypt4879 | C |
Ypt4880 | Y |
4. Population Genetics Analyses
Population | Sample # | Allele:Frequency | Genotype:Frequency |
---|---|---|---|
Afghan | 11 | C:1.00; T:0.00; | CC:1.00; |
Beijing | 11 | C:0.85; T:0.15; | CC:0.80; CT:0.10; TT:0.10; |
Bengal | 15 | C:1.00; T:0.00; | CC:1.00; |
Cornish_UK | 1 | C:1.00; T:0.00; | CC:1.00; |
Europe_egg | 13 | C:1.00; T:0.00; | CC:1.00; |
Europe_meat | 4 | C:1.00; T:0.00; | CC:1.00; |
Gallus_lafayetii | 4 | C:0; T:0; | NN:; |
Gallus_sonnerattii | 3 | C:1.00; T:0.00; | CC:1.00; |
G.g.bankiva | 4 | C:1.00; T:0.00; | CC:1.00; |
G.g.gallus | 6 | C:1.00; T:0.00; | CC:1.00; |
G.g.jabouillei | 27 | C:1.00; T:0.00; | CC:1.00; |
G.g.murghi | 68 | C:1.00; T:0.00; | CC:1.00; |
G.g.spadiceus | 36 | C:1.00; T:0.00; | CC:1.00; |
G.g.spadiceus_Thai | 9 | C:1.00; T:0.00; | CC:1.00; |
Guangxi | 6 | C:1.00; T:0.00; | CC:1.00; |
Guangzhou | 6 | C:1.00; T:0.00; | CC:1.00; |
G.varius | 12 | C:1.00; T:0.00; | CC:1.00; |
Hainan | 1 | C:1.00; T:0.00; | CC:1.00; |
Henan | 8 | C:0.67; T:0.33; | TT:0.33; CC:0.67; |
India | 52 | C:1.00; T:0.00; | CC:1.00; |
Indonesia | 36 | C:0.95; T:0.05; | CC:0.95; TT:0.05; |
Iran | 182 | C:0.99; T:0.01; | CC:0.98; CT:0.01; TT:0.01; |
Jiangsu | 10 | C:1.00; T:0.00; | CC:1.00; |
Jiangxi | 30 | C:0.87; T:0.13; | CC:0.83; CT:0.09; TT:0.09; |
Liaoning | 8 | C:1.00; T:0.00; | CC:1.00; |
Pakistan | 37 | C:0.97; T:0.03; | CC:0.97; TT:0.03; |
Rhode_USA | 1 | C:1.00; T:0.00; | CC:1.00; |
Shandong | 18 | C:1.00; T:0.00; | CC:1.00; |
Shanxi | 8 | C:1.00; T:0.00; | CC:1.00; |
Srilanka | 7 | C:1.00; T:0.00; | CC:1.00; |
Taiwan | 1 | C:1.00; T:0.00; | CC:1.00; |
Thailand | 6 | C:1.00; T:0.00; | CC:1.00; |
Tibet | 113 | C:0.97; T:0.03; | CC:0.97; TT:0.03; |
Vietnan | 7 | C:1.00; T:0.00; | CC:1.00; |
WhitePlymouth_USA | 1 | C:1.00; T:0.00; | CC:1.00; |
Xinjiang | 30 | C:0.96; T:0.04; | CC:0.96; TT:0.04; |
Yuanbao | 24 | C:0.59; T:0.41; | CC:0.36; CT:0.45; TT:0.18; |
Yunnan | 49 | C:0.97; T:0.03; | CC:0.94; CT:0.06; |
5. Genotype-Phenotype Information
Chr | Position | RSID | Species/Population | Trait | Effect Allele | P-value | Reported Gene(s) Symbol | PMID |
---|