ChickenSD
Detail information of ggaS0050005000738
1.General Information
SNP ID: |
ggaS0050005000738 |
Organism: |
Gallus gallus |
Individual: |
20736 |
2.Allele information
Platform: |
SOLEXA |
Method: |
sequence |
SNP Class: |
SNP |
Genotype: |
G |
3.Reference Map information
Chrom |
Position |
Reference |
20736
|
chrW
|
6755
|
T
|
G
|
4.Gene information
Var ID |
Gene ID |
Transcript ID |
Gene Symbol |
Variant Effect |
Biotype |
cDNA Position |
Allele Change |
Protein ID |
Protein Position |
Residue Change |
ggaS0050005000738 |
ENSGALG00000025736
|
|
- |
3_prime_UTR_variant |
|
|
=>
|
|
|
=>
|
5.Individual Genotype
Individual |
Genotype |
104S_L7_I029
|
T
|
105S_L3_I039
|
T
|
107S_L2_I031
|
K
|
10S_L1_I052
|
T
|
110S_L4_I034
|
T
|
113S_L1_I036
|
G
|
114S_L3_I037
|
K
|
116S_L6_I038
|
T
|
118S_L4_I040
|
T
|
119S_L3_I041
|
T
|
11S
|
K
|
120S_L1_I041
|
T
|
121S_L3_I042
|
T
|
122S_L4_I043
|
G
|
123S_L4_I044
|
T
|
124S_L2_I048
|
T
|
126S_L3_I051
|
T
|
128S_L1_I042
|
T
|
129S_L3_I043
|
K
|
130S_L4_I044
|
T
|
131S_L2_I045
|
T
|
134S_L2_I047
|
T
|
135S_L3_I048
|
T
|
13S_L7_I012
|
T
|
15S_L6_I022
|
T
|
16S_L5_I023
|
T
|
17S_L3_I024
|
T
|
18S_L7_I025
|
T
|
19297
|
T
|
19912
|
T
|
20S_L7_I027
|
T
|
22S_L6_I029
|
T
|
23S_L2_I030
|
T
|
24S_L4_I031
|
T
|
25S_L3_I032
|
T
|
27S_L4_I034
|
T
|
28S_L4_I035
|
T
|
2S
|
T
|
31S_L3_I038
|
T
|
32S_L1_I039
|
T
|
35S_L5_I041
|
T
|
37S_L2_I043
|
G
|
38S_L6_I044
|
T
|
39S_L6_I053
|
T
|
40S_L2_I054
|
T
|
42S_L3_I055
|
T
|
43S
|
T
|
47S_L3_I046
|
G
|
48S_L1_I004
|
G
|
49S_L1_I005
|
K
|
4S_L4_I004
|
K
|
50S_L1_I047
|
K
|
51S_L6_I048
|
G
|
55S_L1_I008
|
T
|
58S_L4_I051
|
T
|
5S
|
T
|
60S_L5_I053
|
T
|
61S_L8_I054
|
K
|
62S_L8_I055
|
T
|
63S_L5_I056
|
T
|
64S_L4_I001
|
K
|
66S_L2_I003
|
T
|
67S_L1_I011
|
T
|
68S_L3_I012
|
T
|
69S
|
T
|
6S
|
K
|
70S
|
G
|
74S_L4_I026
|
T
|
75S_L3_I027
|
K
|
76S_L1_I028
|
T
|
77S_L4_I029
|
T
|
78S_L4_I030
|
T
|
79S_L2_I031
|
G
|
7S_L4_I007
|
T
|
81S_L1_I005
|
T
|
82S
|
T
|
83S_L3_I033
|
T
|
85S_L5_I007
|
T
|
86S_L5_I008
|
T
|
87S_L5_I010
|
T
|
88S_L4_I011
|
T
|
89S_L6_I012
|
T
|
90S_L4_I021
|
T
|
91S_L4_I022
|
K
|
92S_L5_I023
|
T
|
93S_L7_I024
|
T
|
95S_L8_I025
|
K
|
96S_L4_I026
|
K
|
97S_L8_I027
|
T
|
98S_L3_I034
|
T
|
99S_L2_I035
|
T
|
9S
|
G
|
A1
|
G
|
A14
|
K
|
A3
|
G
|
BKL2
|
K
|
BLB1_L2_I007
|
G
|
BLO1
|
G
|
BLO15
|
G
|
BLO2
|
G
|
BYW5_L2_I010
|
G
|
GVF
|
G
|
India1
|
T
|
India11
|
T
|
India13
|
T
|
India17
|
T
|
India19
|
T
|
India23
|
T
|
India25
|
K
|
India27
|
T
|
India29
|
T
|
India31
|
T
|
India33
|
T
|
India35
|
K
|
India37
|
K
|
India39
|
T
|
India41
|
T
|
India43
|
G
|
India45
|
T
|
India47
|
T
|
India5
|
T
|
India51
|
T
|
India55
|
T
|
India57
|
T
|
India59
|
T
|
India61
|
G
|
India7
|
T
|
India9
|
T
|
L2
|
T
|
N1
|
T
|
N11
|
K
|
N13
|
T
|
N18
|
T
|
N7
|
T
|
S-f3_I108
|
T
|
SAMN02486156
|
T
|
SAMN02486157
|
T
|
SAMN02486158
|
T
|
SAMN02486159
|
T
|
SAMN02486160
|
T
|
SAMN02486161
|
K
|
SAMN02486163
|
T
|
SAMN02486165
|
T
|
SAMN02486166
|
K
|
SAMN02486167
|
K
|
Silkia
|
T
|
T2
|
T
|
T3
|
T
|
T5
|
K
|
TD1
|
T
|
TD15
|
K
|
TD22
|
T
|
TD27
|
T
|
TD30
|
T
|
Tibet
|
T
|
Xcelris_105
|
T
|
Xcelris_12
|
T
|
Xcelris_129
|
T
|
Xcelris_13
|
T
|
Xcelris_14
|
T
|
Xcelris_143
|
T
|
Xcelris_14A
|
T
|
Xcelris_219
|
T
|
Xcelris_221
|
G
|
Xcelris_222
|
K
|
Xcelris_226
|
T
|
Xcelris_276
|
K
|
Xcelris_280
|
T
|
Xcelris_332
|
T
|
Xcelris_339
|
T
|
Xcelris_380
|
K
|
Xcelris_392
|
K
|
Xcelris_44
|
T
|
Xcelris_4B
|
T
|
Xcelris_5B
|
T
|
Xcelris_77
|
G
|
Xcelris_84
|
T
|
Xcelris_90
|
T
|
Xcelris_MT-134
|
T
|
Xcelris_MT-18
|
K
|
Xcelris_MT-48
|
G
|
Xcelris_MT-6
|
T
|
Xcelris_MT-85
|
T
|
Y1-f1_L5_I119
|
K
|
Y1-f2_L6_I121
|
T
|
Y1-f3_L7_I101
|
T
|
Y1-m2_L4_I122
|
K
|
YPt565
|
T
|
YPt604
|
T
|
YPt609
|
K
|
YPt610
|
T
|
YPt637
|
T
|
YPt641
|
K
|
YPt648
|
T
|
You3_L7_I1000005
|
G
|
Ypt566
|
K
|
Ypt567
|
G
|
Ypt568
|
T
|
Ypt570
|
K
|
Ypt571
|
K
|
Ypt572
|
T
|
Ypt573
|
T
|
Ypt574
|
T
|
Ypt575
|
K
|
Ypt576
|
T
|
Ypt577
|
T
|
Ypt578
|
T
|
Ypt580
|
T
|
Ypt582
|
T
|
Ypt583
|
T
|
Ypt584
|
T
|
Ypt587
|
K
|
Ypt588
|
K
|
Ypt589
|
K
|
Ypt606
|
T
|
Ypt607
|
T
|
Ypt622
|
T
|
Ypt623
|
T
|
Ypt626
|
T
|
Ypt638
|
T
|
Ypt642
|
T
|
Ypt643
|
T
|
Ypt646
|
G
|
Yt516
|
K
|
Yt517
|
T
|
Yt518
|
T
|
Yt520
|
T
|
Yt521
|
T
|
Yt522
|
K
|
Yt523
|
T
|
Yt524
|
T
|
Yt525
|
T
|
Yt526
|
K
|
Yt527
|
K
|
Yt528
|
T
|
Yt530
|
T
|
Yt536
|
K
|
Yt538
|
K
|
Yt539
|
T
|
Yt540
|
T
|
ZJ1
|
T
|
ZJ3
|
T
|
ZJ4
|
K
|
india3
|
T
|
production
|
T
|
ypt169_L3_I011
|
T
|
ypt171_L2_I021
|
K
|
ypt173_L2_I022
|
T
|
ypt175_L2_I023
|
T
|
ypt2041_L6_I002
|
K
|
ypt2043_L1_I037
|
T
|
ypt2051_L3_I003
|
K
|
ypt2053_L6_I004
|
G
|
ypt2069_L6_I006
|
T
|
ypt2071_L1_I038
|
K
|
ypt2082
|
T
|
ypt2086
|
T
|
ypt2087
|
T
|
ypt2092
|
T
|
ypt2093
|
T
|
ypt2098
|
T
|
ypt2100
|
K
|
ypt2101
|
T
|
ypt2102
|
T
|
ypt2103
|
T
|
ypt2106
|
G
|
ypt2108
|
T
|
ypt2111
|
G
|
ypt2114
|
K
|
ypt2115
|
T
|
ypt2116
|
G
|
ypt2117
|
K
|
ypt2118
|
K
|
ypt2119
|
G
|
ypt2120
|
T
|
ypt2122
|
K
|
ypt2127_L1_I036
|
T
|
ypt2128_L6_I054
|
T
|
ypt2144_L6_I055
|
T
|
ypt2145_L6_I056
|
T
|
ypt2146_L6_I001
|
T
|
ypt2163
|
T
|
ypt2164
|
K
|
ypt2165
|
T
|
ypt2166
|
T
|
ypt2167
|
T
|
ypt2168
|
T
|
ypt2169
|
K
|
ypt2171
|
K
|
ypt2173
|
T
|
ypt2174
|
T
|
ypt2175
|
T
|
ypt2177
|
K
|
ypt2178
|
T
|
ypt217_L2_I024
|
G
|
ypt2184
|
T
|
ypt2187
|
K
|
ypt2189
|
G
|
ypt2190
|
T
|
ypt2191
|
T
|
ypt2201
|
K
|
ypt2205
|
T
|
ypt2209
|
K
|
ypt220_L2_I026
|
T
|
ypt2214
|
K
|
ypt2215
|
T
|
ypt2217
|
T
|
ypt2219
|
T
|
ypt222_L3_I027
|
T
|
ypt2437
|
T
|
ypt2439
|
K
|
ypt2442
|
T
|
ypt2443
|
T
|
ypt2446
|
G
|
ypt2447
|
K
|
ypt2448
|
T
|
ypt2454
|
T
|
ypt2459
|
T
|
ypt2468
|
K
|
ypt2496
|
T
|
ypt2497
|
T
|
ypt2498
|
G
|
ypt2499
|
T
|
ypt2500
|
T
|
ypt2504
|
T
|
ypt2512
|
T
|
ypt2516
|
K
|
ypt2523
|
T
|
ypt2534
|
T
|
ypt2544
|
T
|
ypt2545
|
T
|
ypt2546
|
T
|
ypt2552
|
T
|
ypt2562
|
T
|
ypt2563
|
T
|
ypt2570
|
T
|
ypt2571
|
T
|
ypt2572
|
T
|
ypt2575
|
T
|
ypt2579
|
T
|
ypt2598
|
T
|
ypt259_L2_I029
|
T
|
ypt2601
|
T
|
ypt2606
|
T
|
ypt2615
|
T
|
ypt2622
|
T
|
ypt2624
|
T
|
ypt2627
|
T
|
ypt2628
|
T
|
ypt262_L3_I030
|
T
|
ypt2636
|
G
|
ypt2638
|
T
|
ypt263_L3_I031
|
T
|
ypt2641
|
T
|
ypt2644
|
T
|
ypt2646
|
T
|
ypt2656
|
G
|
ypt2657
|
G
|
ypt2658
|
K
|
ypt2661
|
K
|
ypt2664
|
K
|
ypt2665
|
G
|
ypt2672
|
T
|
ypt2706
|
T
|
ypt2724
|
T
|
ypt2729
|
T
|
ypt2733
|
K
|
ypt2739
|
T
|
ypt2740
|
T
|
ypt2745
|
K
|
ypt2760
|
T
|
ypt2761
|
T
|
ypt2765
|
T
|
ypt2766
|
T
|
ypt2775
|
K
|
ypt2780
|
G
|
ypt2784
|
T
|
ypt2785
|
K
|
ypt2786
|
T
|
ypt2787
|
T
|
ypt2788
|
T
|
ypt2789
|
G
|
ypt2790
|
T
|
ypt2792
|
T
|
ypt2799
|
T
|
ypt2800
|
T
|
ypt2810
|
T
|
ypt2812
|
T
|
ypt2813
|
T
|
ypt2814
|
T
|
ypt2815
|
T
|
ypt2816
|
T
|
ypt2817
|
K
|
ypt2819
|
T
|
ypt2821
|
T
|
ypt2822
|
K
|
ypt2823
|
K
|
ypt2824
|
T
|
ypt2825
|
T
|
ypt2826
|
T
|
ypt2827
|
G
|
ypt2828
|
G
|
ypt2842
|
K
|
ypt2843
|
G
|
ypt2859
|
K
|
ypt2860
|
G
|
ypt2862
|
G
|
ypt2870
|
G
|
ypt2871
|
G
|
ypt2890_L3_I040
|
G
|
ypt2891_L3_I041
|
G
|
ypt2892
|
T
|
ypt2893_L3_I025
|
T
|
ypt2894
|
T
|
ypt2902
|
T
|
ypt2909
|
T
|
ypt2911
|
T
|
ypt2912
|
K
|
ypt2918
|
T
|
ypt2929
|
T
|
ypt2930
|
T
|
ypt3001
|
T
|
ypt3002
|
K
|
ypt3003
|
K
|
ypt3004
|
T
|
ypt3005
|
T
|
ypt3006
|
G
|
ypt3007
|
T
|
ypt3008
|
T
|
ypt3009
|
T
|
ypt3010
|
T
|
ypt3011
|
T
|
ypt3012
|
T
|
ypt3016
|
T
|
ypt3017
|
G
|
ypt3028
|
T
|
ypt3038
|
T
|
ypt3040
|
T
|
ypt3041
|
T
|
ypt3042
|
K
|
ypt3043
|
T
|
ypt3044
|
T
|
ypt3047
|
T
|
ypt3061
|
T
|
ypt3138
|
T
|
ypt3139
|
T
|
ypt3140
|
T
|
ypt3141
|
T
|
ypt3142
|
T
|
ypt3143
|
K
|
ypt3145
|
T
|
ypt3149_L2_I034
|
T
|
ypt3150_L8_I023
|
K
|
ypt3159_L6_I035
|
K
|
ypt3160_L8_I024
|
T
|
ypt3162_L6_I036
|
T
|
ypt3179_L8_I025
|
T
|
ypt3180
|
K
|
ypt3181_L7_I038
|
T
|
ypt3189_L1_I040
|
K
|
ypt3190_L8_I026
|
T
|
ypt3191_L2_I041
|
T
|
ypt3193_L1_I027
|
T
|
ypt3197_L1_I044
|
T
|
ypt3206_L1_I048
|
T
|
ypt3220_L1_I031
|
T
|
ypt3225_L2_I053
|
T
|
ypt3228-7_L1_I034
|
T
|
ypt3239_L1_I035
|
T
|
ypt3243_L8_I047
|
T
|
ypt3246_L6_I050
|
T
|
ypt3262_L7_I005
|
T
|
ypt3269_L7_I006
|
G
|
ypt3270_L1_I007
|
K
|
ypt3272_L7_I010
|
T
|
ypt3276_L7_I021
|
K
|
ypt3289_L8_I021
|
T
|
ypt55_L1_I033
|
T
|
ypt897_L3_I048
|
T
|
ypt904_L4_I055
|
K
|
ypt910_L3_I005
|
K
|
ypt912
|
T
|
ypt915
|
T
|
ypt918_L3_I007
|
T
|
ypt923_L2_I051
|
G
|
ypt925_L2_I022
|
T
|
ypt929
|
T
|
ypt932
|
T
|
ypt933
|
K
|
ypt936
|
G
|
ypt937
|
T
|
ypt938x
|
T
|
ypt941_L5_I027
|
K
|
ypt942_L7_I028
|
T
|
ypt943
|
T
|
ypt945_L4_I031
|
K
|
ypt949_L3_I035
|
T
|
ypt951
|
T
|
ypt952
|
K
|
ypt953
|
T
|
ypt954
|
T
|
ypt955
|
K
|
ypt956x
|
T
|
ypt958
|
G
|
ypt959
|
K
|
ypt960
|
G
|
ypt961
|
T
|
ypt963
|
K
|
ypt964
|
K
|
ypt965
|
T
|
ypt966
|
T
|
ypt971
|
T
|
ypt972x
|
K
|
ypt973_L4_I037
|
T
|
ypt974
|
T
|
ypt975_L8_I039
|
T
|
ypt977_L2_I041
|
T
|
ypt979_L6_I042
|
T
|
ypt980_L3_I043
|
T
|
ypt981_L2_I044
|
T
|
yptwj
|
K
|
147209
|
K
|
147830
|
K
|