ChickenSD
Detail information of ggaS0050005000731
1.General Information
SNP ID: |
ggaS0050005000731 |
Organism: |
Gallus gallus |
Individual: |
20736 |
2.Allele information
Platform: |
SOLEXA |
Method: |
sequence |
SNP Class: |
SNP |
Genotype: |
A |
3.Reference Map information
Chrom |
Position |
Reference |
20736
|
chrW
|
4051
|
T
|
A
|
4.Gene information
Var ID |
Gene ID |
Transcript ID |
Gene Symbol |
Variant Effect |
Biotype |
cDNA Position |
Allele Change |
Protein ID |
Protein Position |
Residue Change |
ggaS0050005000731 |
ENSGALG00000025736
|
|
- |
downstream_gene_variant |
|
|
=>
|
|
|
=>
|
5.Individual Genotype
Individual |
Genotype |
109S_L5_I033
|
T
|
110S_L4_I034
|
T
|
113S_L1_I036
|
T
|
116S_L6_I038
|
T
|
118S_L4_I040
|
T
|
120S_L1_I041
|
T
|
121S_L3_I042
|
T
|
122S_L4_I043
|
T
|
123S_L4_I044
|
T
|
124S_L2_I048
|
T
|
126S_L3_I051
|
T
|
129S_L3_I043
|
T
|
12S_L4_I011
|
T
|
131S_L2_I045
|
T
|
132S_L2_I046
|
T
|
134S_L2_I047
|
T
|
135S_L3_I048
|
T
|
17S_L3_I024
|
T
|
18833
|
T
|
18S_L7_I025
|
T
|
19297
|
T
|
20S_L7_I027
|
T
|
25S_L3_I032
|
T
|
32S_L1_I039
|
T
|
39S_L6_I053
|
T
|
43S
|
T
|
45S_L2_I002
|
T
|
47S_L3_I046
|
T
|
48S_L1_I004
|
T
|
4S_L4_I004
|
T
|
51S_L6_I048
|
T
|
52S_L2_I050
|
T
|
54S_L2_I007
|
T
|
55S_L1_I008
|
T
|
57S_L3_I046
|
T
|
58S_L4_I051
|
T
|
59S_L5_I052
|
T
|
5S
|
A
|
61S_L8_I054
|
T
|
62S_L8_I055
|
T
|
64S_L4_I001
|
A
|
66S_L2_I003
|
T
|
67S_L1_I011
|
T
|
69S
|
T
|
73S_L1_I025
|
T
|
74S_L4_I026
|
T
|
76S_L1_I028
|
T
|
77S_L4_I029
|
T
|
78S_L4_I030
|
T
|
79S_L2_I031
|
T
|
7S_L4_I007
|
T
|
80S_L3_I004
|
T
|
81S_L1_I005
|
T
|
82S
|
T
|
84S_L5_I006
|
T
|
85S_L5_I007
|
T
|
86S_L5_I008
|
T
|
88S_L4_I011
|
T
|
89S_L6_I012
|
T
|
90S_L4_I021
|
T
|
91S_L4_I022
|
T
|
92S_L5_I023
|
T
|
93S_L7_I024
|
T
|
95S_L8_I025
|
T
|
99S_L2_I035
|
T
|
A1
|
T
|
A10
|
T
|
A3
|
T
|
A8
|
T
|
India1
|
T
|
India13
|
T
|
India15
|
T
|
India17
|
T
|
India19
|
T
|
India21
|
T
|
India29
|
T
|
India33
|
T
|
India35
|
T
|
India37
|
T
|
India39
|
T
|
India41
|
T
|
India43
|
T
|
India45
|
T
|
India5
|
T
|
India57
|
T
|
India61
|
T
|
India7
|
T
|
L2
|
T
|
N1
|
T
|
N11
|
T
|
N18
|
T
|
N3
|
T
|
N5
|
T
|
S-f3_I108
|
T
|
S-m4_L2_I104
|
T
|
SAMN02486158
|
T
|
SAMN02486161
|
T
|
SAMN02486163
|
T
|
SAMN02486166
|
T
|
Silkia
|
T
|
T3
|
T
|
T5
|
T
|
TD15
|
T
|
TD27
|
T
|
TD6
|
T
|
TD9
|
T
|
Tibet
|
T
|
Xcelris_104
|
T
|
Xcelris_105
|
T
|
Xcelris_112
|
T
|
Xcelris_144
|
T
|
Xcelris_226
|
T
|
Xcelris_278
|
T
|
Xcelris_282
|
T
|
Xcelris_331
|
T
|
Xcelris_377
|
T
|
Xcelris_380
|
T
|
Xcelris_382
|
T
|
Xcelris_392
|
T
|
Xcelris_394
|
T
|
Xcelris_97
|
T
|
Xcelris_MT-134
|
T
|
Xcelris_MT-18
|
T
|
Xcelris_MT-6
|
T
|
Y1-f2_L6_I121
|
T
|
Y1-m1_L6_I120
|
T
|
YPt637
|
T
|
YPt641
|
T
|
YPt648
|
T
|
Ypt567
|
W
|
Ypt569
|
T
|
Ypt570
|
T
|
Ypt572
|
T
|
Ypt573
|
T
|
Ypt575
|
T
|
Ypt576
|
T
|
Ypt578
|
T
|
Ypt579
|
T
|
Ypt580
|
T
|
Ypt587
|
T
|
Ypt589
|
T
|
Ypt599
|
T
|
Ypt606
|
T
|
Ypt608
|
T
|
Ypt622
|
T
|
Ypt623
|
T
|
Ypt624
|
T
|
Ypt626
|
T
|
Ypt638
|
T
|
Ypt642
|
T
|
Ypt643
|
T
|
Yt517
|
T
|
Yt518
|
W
|
Yt519
|
T
|
Yt520
|
W
|
Yt521
|
T
|
Yt522
|
T
|
Yt523
|
T
|
Yt526
|
T
|
Yt527
|
T
|
Yt529
|
T
|
Yt530
|
T
|
Yt531
|
T
|
Yt536
|
T
|
Yt538
|
T
|
Yt539
|
T
|
Yt540
|
T
|
ZJ3
|
T
|
india3
|
T
|
production
|
T
|
ypt170_L2_I012
|
T
|
ypt2053_L6_I004
|
T
|
ypt2069_L6_I006
|
T
|
ypt2082
|
T
|
ypt2087
|
T
|
ypt2091
|
T
|
ypt2092
|
T
|
ypt2093
|
T
|
ypt2094
|
T
|
ypt2098
|
T
|
ypt2100
|
T
|
ypt2108
|
T
|
ypt2109
|
T
|
ypt2111
|
T
|
ypt2112
|
T
|
ypt2114
|
T
|
ypt2116
|
T
|
ypt2118
|
T
|
ypt2120
|
T
|
ypt2122
|
T
|
ypt2124_L4_I052
|
T
|
ypt2126_L3_I053
|
T
|
ypt2127_L1_I036
|
T
|
ypt2144_L6_I055
|
T
|
ypt2145_L6_I056
|
T
|
ypt2146_L6_I001
|
T
|
ypt2163
|
T
|
ypt2164
|
T
|
ypt2165
|
T
|
ypt2166
|
T
|
ypt2167
|
T
|
ypt2168
|
T
|
ypt2169
|
T
|
ypt2170
|
T
|
ypt2171
|
T
|
ypt2173
|
T
|
ypt2174
|
T
|
ypt2175
|
T
|
ypt217_L2_I024
|
T
|
ypt2184
|
T
|
ypt2185
|
T
|
ypt2189
|
T
|
ypt2190
|
T
|
ypt2191
|
T
|
ypt219_L3_I025
|
T
|
ypt2200
|
T
|
ypt2209
|
T
|
ypt220_L2_I026
|
T
|
ypt2215
|
T
|
ypt2216
|
T
|
ypt2217
|
T
|
ypt2219
|
T
|
ypt2441
|
T
|
ypt2443
|
T
|
ypt2446
|
T
|
ypt2448
|
T
|
ypt2454
|
T
|
ypt2496
|
T
|
ypt2497
|
T
|
ypt2498
|
T
|
ypt2499
|
T
|
ypt2500
|
T
|
ypt2504
|
T
|
ypt2516
|
T
|
ypt2521
|
T
|
ypt2534
|
T
|
ypt2541
|
T
|
ypt2544
|
T
|
ypt2545
|
T
|
ypt2563
|
T
|
ypt2569
|
T
|
ypt2570
|
T
|
ypt2571
|
T
|
ypt2575
|
T
|
ypt2579
|
T
|
ypt2606
|
T
|
ypt2628
|
T
|
ypt263_L3_I031
|
T
|
ypt2646
|
T
|
ypt2650
|
T
|
ypt2656
|
T
|
ypt2657
|
T
|
ypt2661
|
T
|
ypt2665
|
T
|
ypt2669
|
T
|
ypt2671
|
T
|
ypt2672
|
T
|
ypt2678
|
T
|
ypt2706
|
T
|
ypt2722
|
T
|
ypt2724
|
A
|
ypt2733
|
T
|
ypt2739
|
T
|
ypt2745
|
A
|
ypt2760
|
T
|
ypt2761
|
T
|
ypt2766
|
T
|
ypt2783
|
T
|
ypt2784
|
T
|
ypt2786
|
T
|
ypt2787
|
T
|
ypt2788
|
T
|
ypt2789
|
T
|
ypt2790
|
T
|
ypt2791
|
T
|
ypt2792
|
T
|
ypt2799
|
T
|
ypt2808
|
T
|
ypt2810
|
T
|
ypt2812
|
T
|
ypt2814
|
T
|
ypt2815
|
T
|
ypt2816
|
T
|
ypt2817
|
T
|
ypt2819
|
T
|
ypt2821
|
T
|
ypt2822
|
T
|
ypt2826
|
T
|
ypt2828
|
T
|
ypt2831
|
T
|
ypt2843
|
T
|
ypt2849
|
T
|
ypt2892
|
T
|
ypt2894
|
T
|
ypt2895_L3_I026
|
T
|
ypt2902
|
T
|
ypt2909
|
T
|
ypt2910
|
T
|
ypt2929
|
T
|
ypt3001
|
T
|
ypt3002
|
T
|
ypt3003
|
T
|
ypt3004
|
T
|
ypt3005
|
T
|
ypt3006
|
T
|
ypt3007
|
T
|
ypt3009
|
T
|
ypt3012
|
T
|
ypt3017
|
T
|
ypt3028
|
T
|
ypt3040
|
T
|
ypt3041
|
T
|
ypt3042
|
T
|
ypt3044
|
T
|
ypt3045
|
T
|
ypt3046
|
T
|
ypt3061
|
T
|
ypt3135
|
T
|
ypt3140
|
T
|
ypt3143
|
T
|
ypt3145
|
T
|
ypt3150_L8_I023
|
T
|
ypt3160_L8_I024
|
T
|
ypt3179_L8_I025
|
T
|
ypt3180
|
T
|
ypt3189_L1_I040
|
T
|
ypt3191_L2_I041
|
T
|
ypt3195_L1_I042
|
T
|
ypt3196_L2_I043
|
T
|
ypt3197_L1_I044
|
T
|
ypt3205_L2_I047
|
T
|
ypt3206_L1_I048
|
T
|
ypt3211_L6_I052
|
T
|
ypt3245
|
T
|
ypt3272_L7_I010
|
T
|
ypt3277_L6_I027
|
T
|
ypt4001
|
T
|
ypt53_L2_I032
|
T
|
ypt901_L1_I052
|
T
|
ypt904_L4_I055
|
T
|
ypt906_L3_I001
|
T
|
ypt910_L3_I005
|
T
|
ypt911_L6_I006
|
T
|
ypt930
|
T
|
ypt932
|
T
|
ypt933
|
T
|
ypt937
|
T
|
ypt942_L7_I028
|
T
|
ypt944_L3_I030
|
T
|
ypt954
|
T
|
ypt955
|
T
|
ypt956x
|
T
|
ypt960
|
W
|
ypt962
|
T
|
ypt963
|
T
|
ypt965
|
T
|
ypt966
|
T
|
ypt972x
|
T
|
ypt973_L4_I037
|
T
|
ypt975_L8_I039
|
T
|
ypt976_L7_I040
|
T
|
ypt977_L2_I041
|
T
|
yptwj
|
T
|
147830
|
T
|