ChickenSD
Detail information of ggaS0050002681433
1.General Information
| SNP ID: |
ggaS0050002681433 |
| Organism: |
Gallus gallus |
| Individual: |
20736 |
2.Allele information
| Platform: |
SOLEXA |
| Method: |
sequence |
| SNP Class: |
SNP |
| Genotype: |
C |
3.Reference Map information
| Chrom |
Position |
Reference |
20736
|
| chr22
|
16001
|
G
|
C
|
4.Gene information
| Var ID |
Gene ID |
Transcript ID |
Gene Symbol |
Variant Effect |
Biotype |
cDNA Position |
Allele Change |
Protein ID |
Protein Position |
Residue Change |
| ggaS0050002681433 |
ENSGALG00000000014
|
|
- |
intron_variant |
|
|
=>
|
|
|
=>
|
5.Individual Genotype
| Individual |
Genotype |
|
103S
|
C
|
|
105S_L3_I039
|
G
|
|
107S_L2_I031
|
G
|
|
112S_L3_I035
|
C
|
|
113S_L1_I036
|
G
|
|
114S_L3_I037
|
C
|
|
116S_L6_I038
|
G
|
|
119S_L3_I041
|
G
|
|
11S
|
G
|
|
121S_L3_I042
|
G
|
|
126S_L3_I051
|
G
|
|
128S_L1_I042
|
G
|
|
129S_L3_I043
|
S
|
|
12S_L4_I011
|
G
|
|
130S_L4_I044
|
G
|
|
131S_L2_I045
|
G
|
|
132S_L2_I046
|
G
|
|
133S_L8_I046
|
G
|
|
134S_L2_I047
|
G
|
|
135S_L3_I048
|
G
|
|
13S_L7_I012
|
G
|
|
14S_L2_I021
|
G
|
|
15S_L6_I022
|
G
|
|
16S_L5_I023
|
G
|
|
18833
|
C
|
|
18S_L7_I025
|
G
|
|
19297
|
C
|
|
19912
|
G
|
|
1S
|
G
|
|
20S_L7_I027
|
G
|
|
21S_L6_I028
|
G
|
|
22S_L6_I029
|
G
|
|
23S_L2_I030
|
G
|
|
24S_L4_I031
|
G
|
|
25S_L3_I032
|
G
|
|
26S
|
G
|
|
27S_L4_I034
|
G
|
|
28S_L4_I035
|
G
|
|
2S
|
G
|
|
30S_L2_I037
|
C
|
|
36S_L5_I042
|
C
|
|
37S_L2_I043
|
S
|
|
38S_L6_I044
|
C
|
|
39S_L6_I053
|
G
|
|
3S_L4_I003
|
G
|
|
40S_L2_I054
|
G
|
|
41S_L5_I045
|
G
|
|
42S_L3_I055
|
G
|
|
43S
|
S
|
|
44S_L4_I001
|
S
|
|
46S_L4_I003
|
C
|
|
49S_L1_I005
|
G
|
|
4S_L4_I004
|
G
|
|
50S_L1_I047
|
G
|
|
51S_L6_I048
|
G
|
|
52S_L2_I050
|
G
|
|
5S
|
G
|
|
60S_L5_I053
|
G
|
|
61S_L8_I054
|
C
|
|
66S_L2_I003
|
G
|
|
69S
|
C
|
|
6S
|
C
|
|
70S
|
C
|
|
73S_L1_I025
|
G
|
|
74S_L4_I026
|
G
|
|
77S_L4_I029
|
G
|
|
78S_L4_I030
|
G
|
|
79S_L2_I031
|
G
|
|
7S_L4_I007
|
G
|
|
80S_L3_I004
|
G
|
|
81S_L1_I005
|
G
|
|
83S_L3_I033
|
G
|
|
86S_L5_I008
|
G
|
|
87S_L5_I010
|
G
|
|
89S_L6_I012
|
G
|
|
90S_L4_I021
|
G
|
|
91S_L4_I022
|
G
|
|
95S_L8_I025
|
S
|
|
98S_L3_I034
|
G
|
|
9S
|
G
|
|
A1
|
C
|
|
A10
|
G
|
|
A3
|
C
|
|
BKL2
|
G
|
|
BLO2
|
C
|
|
India1
|
C
|
|
India11
|
G
|
|
India17
|
G
|
|
India19
|
G
|
|
India21
|
G
|
|
India23
|
C
|
|
India25
|
G
|
|
India31
|
G
|
|
India35
|
C
|
|
India39
|
G
|
|
India43
|
C
|
|
India47
|
G
|
|
India5
|
C
|
|
India51
|
G
|
|
India57
|
G
|
|
India59
|
C
|
|
India9
|
G
|
|
L2
|
C
|
|
N1
|
G
|
|
N8
|
G
|
|
S-f1_L4_I106
|
C
|
|
S-f2_I107
|
C
|
|
S-f3_I108
|
C
|
|
SAMN02486158
|
C
|
|
SAMN02486159
|
C
|
|
SAMN02486160
|
C
|
|
SAMN02486161
|
C
|
|
SAMN02486162
|
C
|
|
SAMN02486163
|
G
|
|
SAMN02486165
|
C
|
|
SAMN02486166
|
G
|
|
SAMN02486167
|
S
|
|
T2
|
C
|
|
T3
|
C
|
|
T5
|
C
|
|
TD1
|
G
|
|
TD12
|
S
|
|
TD15
|
G
|
|
TD22
|
C
|
|
TD27
|
G
|
|
Tibet
|
C
|
|
Xcelris_105
|
S
|
|
Xcelris_10B
|
G
|
|
Xcelris_112
|
G
|
|
Xcelris_113
|
G
|
|
Xcelris_12
|
S
|
|
Xcelris_128
|
C
|
|
Xcelris_129
|
C
|
|
Xcelris_13
|
G
|
|
Xcelris_137
|
G
|
|
Xcelris_13B
|
G
|
|
Xcelris_174
|
G
|
|
Xcelris_176
|
G
|
|
Xcelris_1A
|
G
|
|
Xcelris_1B
|
C
|
|
Xcelris_219
|
S
|
|
Xcelris_222
|
S
|
|
Xcelris_224
|
G
|
|
Xcelris_275
|
G
|
|
Xcelris_276
|
G
|
|
Xcelris_278
|
G
|
|
Xcelris_279
|
G
|
|
Xcelris_280
|
S
|
|
Xcelris_2A
|
G
|
|
Xcelris_331
|
S
|
|
Xcelris_333
|
C
|
|
Xcelris_335
|
G
|
|
Xcelris_336
|
G
|
|
Xcelris_339
|
C
|
|
Xcelris_340
|
G
|
|
Xcelris_36
|
G
|
|
Xcelris_377
|
G
|
|
Xcelris_379
|
S
|
|
Xcelris_380
|
G
|
|
Xcelris_382
|
C
|
|
Xcelris_383
|
G
|
|
Xcelris_385
|
G
|
|
Xcelris_394
|
G
|
|
Xcelris_4A
|
G
|
|
Xcelris_4B
|
G
|
|
Xcelris_5A
|
G
|
|
Xcelris_5B
|
G
|
|
Xcelris_67
|
G
|
|
Xcelris_6B
|
G
|
|
Xcelris_77
|
G
|
|
Xcelris_8A
|
S
|
|
Xcelris_8B
|
G
|
|
Xcelris_90
|
C
|
|
Xcelris_97
|
G
|
|
Xcelris_98
|
S
|
|
Xcelris_MT-134
|
G
|
|
Xcelris_MT-18
|
G
|
|
Y1-f2_L6_I121
|
C
|
|
Y1-f3_L7_I101
|
C
|
|
Y1-m2_L4_I122
|
C
|
|
Y1-m3_L7_I123
|
C
|
|
YPt565
|
G
|
|
YPt601
|
G
|
|
YPt609
|
C
|
|
YPt610
|
C
|
|
YPt648
|
C
|
|
Ypt569
|
G
|
|
Ypt570
|
C
|
|
Ypt573
|
G
|
|
Ypt575
|
C
|
|
Ypt576
|
G
|
|
Ypt577
|
S
|
|
Ypt578
|
G
|
|
Ypt579
|
G
|
|
Ypt581
|
G
|
|
Ypt583
|
C
|
|
Ypt584
|
G
|
|
Ypt585
|
S
|
|
Ypt586
|
S
|
|
Ypt587
|
S
|
|
Ypt589
|
G
|
|
Ypt591
|
G
|
|
Ypt592
|
C
|
|
Ypt593
|
G
|
|
Ypt594
|
G
|
|
Ypt595
|
G
|
|
Ypt597
|
S
|
|
Ypt598
|
G
|
|
Ypt603
|
G
|
|
Ypt606
|
C
|
|
Ypt623
|
C
|
|
Ypt624
|
C
|
|
Ypt626
|
C
|
|
Ypt638
|
C
|
|
Ypt640
|
S
|
|
Ypt642
|
C
|
|
Ypt646
|
G
|
|
Ypt647
|
S
|
|
Yt516
|
G
|
|
Yt518
|
G
|
|
Yt519
|
S
|
|
Yt521
|
S
|
|
Yt522
|
C
|
|
Yt523
|
G
|
|
Yt524
|
C
|
|
Yt526
|
S
|
|
Yt527
|
G
|
|
Yt528
|
S
|
|
Yt529
|
G
|
|
Yt530
|
S
|
|
Yt531
|
S
|
|
Yt536
|
G
|
|
Yt538
|
G
|
|
Yt539
|
S
|
|
Yt540
|
S
|
|
ZJ1
|
G
|
|
ZJ2
|
G
|
|
ZJ4
|
G
|
|
india3
|
G
|
|
india49
|
G
|
|
production
|
C
|
|
ypt169_L3_I011
|
G
|
|
ypt171_L2_I021
|
G
|
|
ypt175_L2_I023
|
C
|
|
ypt2041_L6_I002
|
C
|
|
ypt2051_L3_I003
|
C
|
|
ypt2053_L6_I004
|
G
|
|
ypt2071_L1_I038
|
C
|
|
ypt2082
|
G
|
|
ypt2086
|
G
|
|
ypt2087
|
S
|
|
ypt2091
|
G
|
|
ypt2092
|
G
|
|
ypt2093
|
C
|
|
ypt2094
|
G
|
|
ypt2095
|
G
|
|
ypt2100
|
G
|
|
ypt2101
|
S
|
|
ypt2103
|
G
|
|
ypt2105
|
G
|
|
ypt2106
|
G
|
|
ypt2112
|
G
|
|
ypt2114
|
G
|
|
ypt2115
|
G
|
|
ypt2116
|
G
|
|
ypt2117
|
G
|
|
ypt2119
|
C
|
|
ypt2120
|
G
|
|
ypt2121
|
C
|
|
ypt2127_L1_I036
|
C
|
|
ypt2164
|
G
|
|
ypt2165
|
G
|
|
ypt2166
|
G
|
|
ypt2167
|
G
|
|
ypt2168
|
G
|
|
ypt2174
|
C
|
|
ypt2175
|
G
|
|
ypt2177
|
C
|
|
ypt2178
|
G
|
|
ypt217_L2_I024
|
G
|
|
ypt2184
|
C
|
|
ypt2185
|
G
|
|
ypt2186
|
G
|
|
ypt2187
|
G
|
|
ypt2190
|
G
|
|
ypt2191
|
G
|
|
ypt219_L3_I025
|
C
|
|
ypt2200
|
G
|
|
ypt2201
|
G
|
|
ypt2205
|
G
|
|
ypt2209
|
G
|
|
ypt220_L2_I026
|
C
|
|
ypt2214
|
G
|
|
ypt2215
|
G
|
|
ypt2216
|
G
|
|
ypt2218
|
G
|
|
ypt2219
|
G
|
|
ypt2222
|
C
|
|
ypt2437
|
G
|
|
ypt2439
|
G
|
|
ypt2445
|
C
|
|
ypt2446
|
G
|
|
ypt2447
|
C
|
|
ypt2448
|
G
|
|
ypt2459
|
G
|
|
ypt2468
|
G
|
|
ypt2497
|
G
|
|
ypt2504
|
G
|
|
ypt2512
|
G
|
|
ypt2516
|
S
|
|
ypt2521
|
G
|
|
ypt2523
|
G
|
|
ypt2534
|
G
|
|
ypt2541
|
G
|
|
ypt2543
|
G
|
|
ypt2544
|
G
|
|
ypt2545
|
G
|
|
ypt2546
|
G
|
|
ypt2547
|
G
|
|
ypt2552
|
G
|
|
ypt2562
|
G
|
|
ypt2569
|
C
|
|
ypt2570
|
G
|
|
ypt2571
|
C
|
|
ypt2572
|
G
|
|
ypt2574
|
G
|
|
ypt2579
|
G
|
|
ypt258_L3_I028
|
G
|
|
ypt2598
|
G
|
|
ypt259_L2_I029
|
G
|
|
ypt2601
|
G
|
|
ypt2606
|
G
|
|
ypt2608
|
G
|
|
ypt2615
|
G
|
|
ypt2622
|
G
|
|
ypt2624
|
G
|
|
ypt2625
|
C
|
|
ypt2630
|
C
|
|
ypt2636
|
S
|
|
ypt2638
|
C
|
|
ypt263_L3_I031
|
G
|
|
ypt2640
|
G
|
|
ypt2641
|
G
|
|
ypt2643
|
G
|
|
ypt2644
|
G
|
|
ypt2646
|
S
|
|
ypt264_L3_I032
|
S
|
|
ypt2653
|
C
|
|
ypt2658
|
G
|
|
ypt2661
|
G
|
|
ypt2664
|
G
|
|
ypt2665
|
G
|
|
ypt2669
|
G
|
|
ypt2724
|
G
|
|
ypt2729
|
G
|
|
ypt2733
|
C
|
|
ypt2760
|
G
|
|
ypt2766
|
C
|
|
ypt2775
|
C
|
|
ypt2780
|
C
|
|
ypt2783
|
G
|
|
ypt2784
|
G
|
|
ypt2787
|
G
|
|
ypt2788
|
G
|
|
ypt2789
|
G
|
|
ypt2790
|
G
|
|
ypt2791
|
G
|
|
ypt2792
|
G
|
|
ypt2800
|
G
|
|
ypt2812
|
G
|
|
ypt2813
|
G
|
|
ypt2815
|
G
|
|
ypt2816
|
G
|
|
ypt2817
|
G
|
|
ypt2822
|
S
|
|
ypt2825
|
G
|
|
ypt2827
|
G
|
|
ypt2828
|
C
|
|
ypt2831
|
G
|
|
ypt2843
|
C
|
|
ypt2859
|
G
|
|
ypt2871
|
C
|
|
ypt2892
|
C
|
|
ypt2893_L3_I025
|
G
|
|
ypt2902
|
G
|
|
ypt2909
|
G
|
|
ypt2910
|
G
|
|
ypt2911
|
C
|
|
ypt2912
|
G
|
|
ypt2930
|
G
|
|
ypt3002
|
C
|
|
ypt3004
|
G
|
|
ypt3006
|
C
|
|
ypt3008
|
G
|
|
ypt3009
|
C
|
|
ypt3010
|
G
|
|
ypt3012
|
G
|
|
ypt3016
|
C
|
|
ypt3038
|
G
|
|
ypt3040
|
C
|
|
ypt3041
|
G
|
|
ypt3050
|
G
|
|
ypt3051
|
C
|
|
ypt3052
|
C
|
|
ypt3061
|
C
|
|
ypt3140
|
C
|
|
ypt3141
|
C
|
|
ypt3142
|
C
|
|
ypt3143
|
C
|
|
ypt3144_L3_I039
|
C
|
|
ypt3145
|
G
|
|
ypt3149_L2_I034
|
C
|
|
ypt3150_L8_I023
|
G
|
|
ypt3159_L6_I035
|
S
|
|
ypt3162_L6_I036
|
C
|
|
ypt3179_L8_I025
|
C
|
|
ypt3180
|
C
|
|
ypt3181_L7_I038
|
G
|
|
ypt3182_L1_I039
|
S
|
|
ypt3189_L1_I040
|
G
|
|
ypt3190_L8_I026
|
C
|
|
ypt3191_L2_I041
|
G
|
|
ypt3197_L1_I044
|
C
|
|
ypt3206_L1_I048
|
S
|
|
ypt3210_L6_I051
|
G
|
|
ypt3211_L6_I052
|
G
|
|
ypt3212_L4_I028
|
G
|
|
ypt3220_L1_I031
|
S
|
|
ypt3224_L8_I043
|
C
|
|
ypt3225_L2_I053
|
C
|
|
ypt3228-7_L1_I034
|
G
|
|
ypt3229_L8_I045
|
G
|
|
ypt3238_L3_I046
|
G
|
|
ypt3257_L1_I056
|
G
|
|
ypt3259_L6_I002
|
G
|
|
ypt3260_L6_I003
|
G
|
|
ypt3261_L7_I004
|
C
|
|
ypt3262_L7_I005
|
S
|
|
ypt3270_L1_I007
|
S
|
|
ypt3271_L7_I008
|
G
|
|
ypt3275_L1_I012
|
G
|
|
ypt3276_L7_I021
|
G
|
|
ypt3277_L6_I027
|
G
|
|
ypt3278_L3_I028
|
G
|
|
ypt3289_L8_I021
|
S
|
|
ypt47_L2_I029
|
G
|
|
ypt53_L2_I032
|
S
|
|
ypt890
|
C
|
|
ypt891
|
G
|
|
ypt896_L2_I047
|
G
|
|
ypt897_L3_I048
|
C
|
|
ypt898
|
G
|
|
ypt900_L2_I050
|
G
|
|
ypt901_L1_I052
|
G
|
|
ypt903_L2_I054
|
S
|
|
ypt904_L4_I055
|
G
|
|
ypt906_L3_I001
|
C
|
|
ypt907_L6_I002
|
G
|
|
ypt909_L5_I004
|
G
|
|
ypt911_L6_I006
|
G
|
|
ypt913
|
G
|
|
ypt915
|
G
|
|
ypt917
|
G
|
|
ypt918_L3_I007
|
G
|
|
ypt919_L4_I008
|
G
|
|
ypt921_L8_I011
|
G
|
|
ypt923_L2_I051
|
G
|
|
ypt926_L2_I023
|
S
|
|
ypt928
|
G
|
|
ypt929
|
C
|
|
ypt930
|
G
|
|
ypt931
|
S
|
|
ypt932
|
G
|
|
ypt933
|
G
|
|
ypt942_L7_I028
|
C
|
|
ypt943
|
C
|
|
ypt945_L4_I031
|
C
|
|
ypt946_L4_I032
|
C
|
|
ypt949_L3_I035
|
G
|
|
ypt950_L5_I036
|
G
|
|
ypt952
|
C
|
|
ypt953
|
C
|
|
ypt956x
|
C
|
|
ypt962
|
G
|
|
ypt963
|
C
|
|
ypt966
|
G
|
|
ypt972x
|
C
|
|
ypt973_L4_I037
|
G
|
|
ypt974
|
S
|
|
ypt975_L8_I039
|
G
|
|
ypt976_L7_I040
|
G
|
|
ypt978_L2_I052
|
G
|
|
ypt980_L3_I043
|
C
|
|
ypt981_L2_I044
|
G
|
|
ypt982_L4_I045
|
S
|
|
ypt984
|
S
|
|
yptwj
|
S
|
|
147830
|
G
|
|
Gallus_Sonneriatii_d
|
G
|
|
Ypt4000
|
C
|
|
Ypt4879
|
G
|
|
Ypt4880
|
G
|
