ChickenSD

ChickenSD / Individual SNP / ggaS0044001723052

Detail information of ggaS0044001723052

1.General Information

SNP ID: ggaS0044001723052
Organism: Gallus gallus
Individual: 18833

2.Allele information

Platform: SOLEXA
Method: sequence
SNP Class: SNP
Genotype: T

3.Reference Map information

Chrom Position Reference 18833
chr2 1004 C T

4.Gene information

Var ID Gene ID Transcript ID Gene Symbol Variant Effect Biotype cDNA Position Allele Change Protein ID Protein Position Residue Change
ggaS0044001723052 - intergenic_variant => =>

5.Individual Genotype

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Individual Genotype
100S Y
101S_L1_I028 Y
102S_L3_I037 Y
103S Y
104S_L7_I029 Y
105S_L3_I039 Y
106S_L6_I030 Y
107S_L2_I031 Y
108S_L6_I032 C
109S_L5_I033 Y
10S_L1_I052 Y
110S_L4_I034 C
111S_L3_I047 Y
112S_L3_I035 C
113S_L1_I036 C
114S_L3_I037 C
116S_L6_I038 C
117S_L2_I039 Y
118S_L4_I040 Y
119S_L3_I041 C
11S C
120S_L1_I041 C
121S_L3_I042 C
122S_L4_I043 C
123S_L4_I044 Y
124S_L2_I048 C
125S_L3_I050 Y
126S_L3_I051 Y
127S_L2_I045 C
128S_L1_I042 Y
129S_L3_I043 C
12S_L4_I011 C
130S_L4_I044 Y
131S_L2_I045 Y
132S_L2_I046 Y
133S_L8_I046 C
134S_L2_I047 Y
135S_L3_I048 C
13S_L7_I012 C
14S_L2_I021 Y
15S_L6_I022 C
16S_L5_I023 C
17S_L3_I024 C
18S_L7_I025 C
19297 Y
19912 C
19S_L4_I026 Y
1S T
20736 Y
20S_L7_I027 Y
21S_L6_I028 C
22S_L6_I029 Y
23S_L2_I030 Y
24S_L4_I031 C
25S_L3_I032 C
26S C
27S_L4_I034 C
28S_L4_I035 Y
29S_L3_I036 C
2S Y
30S_L2_I037 Y
31S_L3_I038 Y
32S_L1_I039 Y
33S Y
35S_L5_I041 C
36S_L5_I042 C
37S_L2_I043 Y
38S_L6_I044 C
39S_L6_I053 Y
3S_L4_I003 Y
40S_L2_I054 C
41S_L5_I045 Y
42S_L3_I055 C
43S C
44S_L4_I001 Y
45S_L2_I002 Y
46S_L4_I003 C
47S_L3_I046 Y
48S_L1_I004 Y
49S_L1_I005 C
4S_L4_I004 C
50S_L1_I047 Y
51S_L6_I048 Y
52S_L2_I050 Y
53S_L2_I006 Y
54S_L2_I007 Y
55S_L1_I008 Y
56S_L1_I010 Y
57S_L3_I046 Y
58S_L4_I051 T
59S_L5_I052 C
5S Y
60S_L5_I053 C
61S_L8_I054 C
62S_L8_I055 C
63S_L5_I056 C
64S_L4_I001 Y
65S_L5_I002 Y
66S_L2_I003 Y
67S_L1_I011 Y
68S_L3_I012 C
69S C
6S C
70S C
71S_L3_I023 Y
72S_L1_I024 Y
73S_L1_I025 Y
74S_L4_I026 C
75S_L3_I027 C
77S_L4_I029 C
78S_L4_I030 Y
79S_L2_I031 C
7S_L4_I007 Y
80S_L3_I004 Y
81S_L1_I005 C
82S Y
83S_L3_I033 Y
84S_L5_I006 C
86S_L5_I008 Y
87S_L5_I010 C
88S_L4_I011 Y
89S_L6_I012 Y
91S_L4_I022 C
92S_L5_I023 Y
93S_L7_I024 C
95S_L8_I025 Y
96S_L4_I026 C
97S_L8_I027 Y
98S_L3_I034 Y
99S_L2_I035 C
9S Y
A1 Y
A10 Y
A12 Y
A14 Y
A3 Y
A8 C
BKL2 C
BLB1_L2_I007 Y
BLB2_L2_I008 Y
BLO1 T
BLO15 T
BLO3_L4_I022 T
BOJA2 Y
BYW3_L3_I033 C
GVF Y
India1 C
India11 Y
India13 C
India15 Y
India17 Y
India19 Y
India21 C
India23 Y
India25 Y
India27 C
India29 Y
India31 Y
India33 Y
India35 Y
India37 Y
India39 C
India41 Y
India43 C
India45 C
India47 Y
India5 Y
India55 C
India57 Y
India59 C
India61 Y
India7 Y
India9 C
L2 Y
N1 C
N11 C
N13 Y
N18 Y
N3 C
N5 Y
N7 Y
N8 Y
S-f1_L4_I106 C
S-f2_I107 C
S-f3_I108 Y
S-f4_L4_I109 Y
S-m1_I101 Y
S-m2_I102 C
S-m3_I103 Y
S-m4_L2_I104 Y
S-m5_I105 Y
S6 C
SAMN02486156 Y
SAMN02486157 Y
SAMN02486158 C
SAMN02486159 Y
SAMN02486160 Y
SAMN02486161 Y
SAMN02486162 Y
SAMN02486163 Y
SAMN02486164 Y
SAMN02486165 Y
SAMN02486166 C
SAMN02486167 Y
Silkia C
T2 Y
T3 Y
T5 Y
TD1 Y
TD12 C
TD15 C
TD22 Y
TD27 Y
TD30 Y
TD6 Y
TD9 C
Tibet Y
Xcelris_10 C
Xcelris_101 Y
Xcelris_104 C
Xcelris_105 C
Xcelris_10A Y
Xcelris_10B Y
Xcelris_112 C
Xcelris_113 Y
Xcelris_114 Y
Xcelris_11B C
Xcelris_12 Y
Xcelris_120 C
Xcelris_127 Y
Xcelris_128 Y
Xcelris_129 C
Xcelris_13 C
Xcelris_137 Y
Xcelris_13B Y
Xcelris_14 C
Xcelris_141 C
Xcelris_142 C
Xcelris_143 C
Xcelris_144 T
Xcelris_14A C
Xcelris_14B C
Xcelris_174 C
Xcelris_175 Y
Xcelris_1A Y
Xcelris_1B C
Xcelris_219 C
Xcelris_221 C
Xcelris_222 C
Xcelris_224 Y
Xcelris_226 C
Xcelris_227 C
Xcelris_275 T
Xcelris_276 T
Xcelris_278 C
Xcelris_279 C
Xcelris_280 Y
Xcelris_2A T
Xcelris_2B C
Xcelris_331 C
Xcelris_332 C
Xcelris_333 C
Xcelris_335 C
Xcelris_339 C
Xcelris_340 C
Xcelris_378 C
Xcelris_379 C
Xcelris_380 C
Xcelris_381 C
Xcelris_382 Y
Xcelris_383 Y
Xcelris_384 C
Xcelris_385 C
Xcelris_392 C
Xcelris_44 C
Xcelris_4A C
Xcelris_4B T
Xcelris_5A Y
Xcelris_5B Y
Xcelris_67 Y
Xcelris_6B C
Xcelris_7 Y
Xcelris_77 Y
Xcelris_84 Y
Xcelris_8A C
Xcelris_8B C
Xcelris_90 Y
Xcelris_98 Y
Xcelris_MT-18 C
Xcelris_MT-46 C
Xcelris_MT-48 C
Xcelris_MT-6 C
Xcelris_MT-85 C
Xcelris_MT-9 T
Xcelris_MT-99 C
Y1-f1_L5_I119 C
Y1-f2_L6_I121 C
Y1-m1_L6_I120 Y
Y1-m2_L4_I122 C
Y1-m5_L7_I102 C
YPt565 Y
YPt601 Y
YPt604 Y
YPt609 Y
YPt610 Y
YPt637 Y
YPt641 Y
YPt648 Y
You1 Y
You3_L7_I1000005 Y
Ypt566 Y
Ypt567 Y
Ypt568 Y
Ypt569 Y
Ypt570 Y
Ypt571 Y
Ypt572 Y
Ypt573 C
Ypt574 Y
Ypt575 Y
Ypt576 Y
Ypt577 Y
Ypt578 Y
Ypt579 Y
Ypt580 Y
Ypt581 Y
Ypt582 Y
Ypt583 Y
Ypt584 Y
Ypt585 Y
Ypt586 Y
Ypt587 Y
Ypt588 Y
Ypt589 Y
Ypt590 Y
Ypt591 Y
Ypt592 Y
Ypt593 Y
Ypt594 Y
Ypt595 Y
Ypt596 Y
Ypt597 Y
Ypt598 Y
Ypt599 Y
Ypt600 Y
Ypt602 Y
Ypt603 Y
Ypt606 Y
Ypt607 Y
Ypt608 Y
Ypt622 Y
Ypt623 Y
Ypt624 Y
Ypt626 Y
Ypt638 Y
Ypt640 Y
Ypt642 Y
Ypt643 Y
Ypt645 Y
Ypt646 Y
Ypt647 Y
Yt516 Y
Yt517 Y
Yt518 Y
Yt519 Y
Yt520 Y
Yt521 Y
Yt522 Y
Yt523 Y
Yt524 C
Yt525 Y
Yt526 Y
Yt527 Y
Yt528 Y
Yt529 Y
Yt530 Y
Yt531 Y
Yt536 Y
Yt538 Y
Yt539 Y
Yt540 Y
ZJ1 Y
ZJ2 Y
ZJ3 Y
ZJ4 Y
india3 C
production Y
ypt169_L3_I011 C
ypt170_L2_I012 C
ypt171_L2_I021 C
ypt173_L2_I022 Y
ypt175_L2_I023 C
ypt2041_L6_I002 C
ypt2043_L1_I037 C
ypt2051_L3_I003 Y
ypt2053_L6_I004 C
ypt2063_L6_I005 Y
ypt2069_L6_I006 Y
ypt2071_L1_I038 C
ypt2086 C
ypt2087 Y
ypt2091 C
ypt2092 T
ypt2093 Y
ypt2095 C
ypt2098 Y
ypt2100 Y
ypt2101 C
ypt2103 Y
ypt2105 C
ypt2107 C
ypt2108 Y
ypt2109 T
ypt2110 Y
ypt2111 Y
ypt2112 C
ypt2114 Y
ypt2115 C
ypt2116 C
ypt2117 C
ypt2118 C
ypt2119 Y
ypt2120 Y
ypt2121 C
ypt2122 C
ypt2124_L4_I052 C
ypt2126_L3_I053 C
ypt2127_L1_I036 Y
ypt2128_L6_I054 C
ypt2144_L6_I055 C
ypt2145_L6_I056 C
ypt2146_L6_I001 C
ypt2163 Y
ypt2164 Y
ypt2165 Y
ypt2166 Y
ypt2167 C
ypt2168 Y
ypt2169 C
ypt2170 Y
ypt2171 C
ypt2172 Y
ypt2173 C
ypt2174 Y
ypt2175 Y
ypt2176 Y
ypt2177 Y
ypt2178 C
ypt217_L2_I024 C
ypt2184 Y
ypt2185 C
ypt2186 Y
ypt2187 Y
ypt2189 C
ypt2190 Y
ypt2191 Y
ypt219_L3_I025 Y
ypt2200 Y
ypt2201 C
ypt2205 C
ypt2209 C
ypt2214 C
ypt2215 C
ypt2216 C
ypt2217 Y
ypt2218 Y
ypt2219 C
ypt221_L3_I042 Y
ypt2220 Y
ypt2221 Y
ypt2222 Y
ypt222_L3_I027 Y
ypt2437 Y
ypt2438 Y
ypt2439 Y
ypt2440 C
ypt2441 Y
ypt2442 Y
ypt2443 C
ypt2444 Y
ypt2445 C
ypt2446 C
ypt2447 C
ypt2448 C
ypt2449 Y
ypt2454 Y
ypt2459 C
ypt2468 C
ypt2496 C
ypt2497 C
ypt2498 C
ypt2499 Y
ypt2500 C
ypt2503 Y
ypt2504 Y
ypt2507 C
ypt2512 Y
ypt2516 C
ypt2521 C
ypt2523 Y
ypt2534 Y
ypt2541 Y
ypt2543 C
ypt2544 Y
ypt2545 C
ypt2546 C
ypt2547 Y
ypt2552 C
ypt2562 C
ypt2563 C
ypt2569 C
ypt2570 C
ypt2571 Y
ypt2572 C
ypt2573 Y
ypt2574 T
ypt2575 Y
ypt2579 Y
ypt258_L3_I028 C
ypt2598 Y
ypt259_L2_I029 Y
ypt2601 C
ypt2606 C
ypt2608 C
ypt2615 C
ypt2622 Y
ypt2623 C
ypt2624 Y
ypt2625 Y
ypt2627 Y
ypt2628 Y
ypt2629 Y
ypt262_L3_I030 C
ypt2630 C
ypt2636 Y
ypt2638 C
ypt263_L3_I031 Y
ypt2640 Y
ypt2641 C
ypt2643 Y
ypt2644 C
ypt2646 C
ypt264_L3_I032 Y
ypt2650 Y
ypt2653 C
ypt2656 Y
ypt2657 Y
ypt2658 C
ypt2661 C
ypt2664 Y
ypt2665 Y
ypt2669 Y
ypt2670 Y
ypt2671 Y
ypt2672 Y
ypt2673 Y
ypt2678 Y
ypt2706 T
ypt2722 C
ypt2724 Y
ypt2729 C
ypt2733 C
ypt2739 C
ypt2740 C
ypt2745 Y
ypt2746 Y
ypt2760 Y
ypt2761 Y
ypt2765 C
ypt2766 C
ypt2775 C
ypt2780 C
ypt2781 Y
ypt2782 Y
ypt2783 Y
ypt2784 C
ypt2785 C
ypt2787 C
ypt2788 Y
ypt2789 C
ypt2790 Y
ypt2791 Y
ypt2792 C
ypt2799 Y
ypt2800 Y
ypt2808 C
ypt2812 Y
ypt2813 C
ypt2814 Y
ypt2815 Y
ypt2817 C
ypt2819 Y
ypt2821 C
ypt2822 Y
ypt2823 C
ypt2824 Y
ypt2825 Y
ypt2826 C
ypt2827 Y
ypt2828 Y
ypt2831 Y
ypt2832 Y
ypt2842 Y
ypt2843 Y
ypt2849 C
ypt2859 C
ypt2860 Y
ypt2861 Y
ypt2862 T
ypt2870 T
ypt2887 T
ypt2888 Y
ypt2889 C
ypt2891_L3_I041 Y
ypt2892 C
ypt2893_L3_I025 Y
ypt2894 C
ypt2895_L3_I026 Y
ypt2902 Y
ypt2909 Y
ypt2910 C
ypt2911 Y
ypt2912 Y
ypt2918 C
ypt2929 Y
ypt2930 Y
ypt3001 Y
ypt3002 Y
ypt3003 Y
ypt3004 C
ypt3005 Y
ypt3006 C
ypt3007 C
ypt3008 Y
ypt3009 Y
ypt3011 C
ypt3012 Y
ypt3016 C
ypt3017 Y
ypt3028 Y
ypt3038 C
ypt3040 Y
ypt3041 C
ypt3042 C
ypt3043 Y
ypt3044 Y
ypt3045 C
ypt3046 Y
ypt3047 Y
ypt3050 Y
ypt3051 C
ypt3052 C
ypt3061 Y
ypt3069 Y
ypt3072 Y
ypt3133 C
ypt3134 Y
ypt3135 Y
ypt3136 Y
ypt3137 C
ypt3138 Y
ypt3139 Y
ypt3140 C
ypt3141 Y
ypt3142 Y
ypt3143 Y
ypt3144_L3_I039 Y
ypt3145 Y
ypt3146 Y
ypt3149_L2_I034 Y
ypt3150_L8_I023 C
ypt3159_L6_I035 Y
ypt3160_L8_I024 C
ypt3162_L6_I036 Y
ypt3179_L8_I025 Y
ypt3180 Y
ypt3181_L7_I038 Y
ypt3182_L1_I039 C
ypt3189_L1_I040 C
ypt3190_L8_I026 Y
ypt3191_L2_I041 Y
ypt3193_L1_I027 Y
ypt3195_L1_I042 Y
ypt3196_L2_I043 C
ypt3197_L1_I044 Y
ypt3198_L2_I045 C
ypt3204_L7_I046 Y
ypt3205_L2_I047 C
ypt3206_L1_I048 C
ypt3207_L6_I050 Y
ypt3210_L6_I051 Y
ypt3211_L6_I052 C
ypt3212_L4_I028 Y
ypt3213_L8_I029 Y
ypt3219_L1_I030 C
ypt3220_L1_I031 Y
ypt3221_L1_I032 C
ypt3222_L1_I033 Y
ypt3224_L8_I043 Y
ypt3225_L2_I053 C
ypt3228-7_L1_I034 C
ypt3229_L8_I045 Y
ypt3238_L3_I046 Y
ypt3239_L1_I035 C
ypt3240_L6_I054 C
ypt3241_L6_I055 C
ypt3243_L8_I047 C
ypt3245 T
ypt3246_L6_I050 C
ypt3247_L6_I051 C
ypt3257_L1_I056 C
ypt3258_L3_I001 Y
ypt3260_L6_I003 Y
ypt3261_L7_I004 C
ypt3262_L7_I005 C
ypt3269_L7_I006 C
ypt3270_L1_I007 C
ypt3271_L7_I008 Y
ypt3272_L7_I010 C
ypt3274A_L7_I011 C
ypt3275_L1_I012 T
ypt3276_L7_I021 T
ypt3277_L6_I027 C
ypt3278_L3_I028 C
ypt3289_L8_I021 Y
ypt47_L2_I029 T
ypt50_L2_I030 C
ypt53_L2_I032 C
ypt55_L1_I033 C
ypt890 C
ypt891 C
ypt897_L3_I048 C
ypt898 C
ypt902_L1_I053 C
ypt903_L2_I054 C
ypt904_L4_I055 C
ypt905_L6_I056 C
ypt906_L3_I001 Y
ypt907_L6_I002 Y
ypt908_L1_I003 C
ypt909_L5_I004 C
ypt910_L3_I005 C
ypt912 C
ypt913 C
ypt915 T
ypt917 Y
ypt918_L3_I007 Y
ypt919_L4_I008 Y
ypt921_L8_I011 C
ypt922_L4_I012 Y
ypt923_L2_I051 Y
ypt925_L2_I022 Y
ypt926_L2_I023 C
ypt928 C
ypt929 Y
ypt931 Y
ypt933 C
ypt935 C
ypt936 C
ypt937 C
ypt938x C
ypt939_L5_I025 T
ypt940_L4_I026 C
ypt941_L5_I027 C
ypt942_L7_I028 C
ypt944_L3_I030 Y
ypt945_L4_I031 C
ypt948_L2_I034 C
ypt949_L3_I035 Y
ypt950_L5_I036 Y
ypt951 Y
ypt952 Y
ypt953 Y
ypt954 Y
ypt955 Y
ypt956x Y
ypt957 Y
ypt958 Y
ypt959 Y
ypt960 Y
ypt961 Y
ypt962 Y
ypt963 Y
ypt964 Y
ypt965 Y
ypt966 C
ypt971 Y
ypt972x Y
ypt973_L4_I037 Y
ypt974 Y
ypt975_L8_I039 Y
ypt976_L7_I040 Y
ypt977_L2_I041 Y
ypt978_L2_I052 Y
ypt979_L6_I042 Y
ypt980_L3_I043 Y
ypt981_L2_I044 Y
ypt982_L4_I045 Y
ypt984 Y
yptwj Y
147209 Y
147830 Y
GLF_denovo Y
Gallus_Sonneriatii_d Y
Ypt4000 Y
Ypt4879 Y
Ypt4880 Y