ChickenSD
Detail information of ggaS0043002533632
1.General Information
SNP ID: |
ggaS0043002533632 |
Organism: |
Gallus gallus |
Individual: |
17S_L3_I024 |
2.Allele information
Platform: |
SOLEXA |
Method: |
sequence |
SNP Class: |
SNP |
Genotype: |
T |
3.Reference Map information
Chrom |
Position |
Reference |
17S_L3_I024
|
chr25
|
2665
|
C
|
T
|
4.Gene information
Var ID |
Gene ID |
Transcript ID |
Gene Symbol |
Variant Effect |
Biotype |
cDNA Position |
Allele Change |
Protein ID |
Protein Position |
Residue Change |
ggaS0043002533632 |
ENSGALG00000009011
|
|
SMG5 |
intron_variant |
|
|
=>
|
|
|
=>
|
5.Individual Genotype
Individual |
Genotype |
128S_L1_I042
|
C
|
129S_L3_I043
|
C
|
16S_L5_I023
|
T
|
18833
|
C
|
33S
|
T
|
48S_L1_I004
|
C
|
53S_L2_I006
|
C
|
63S_L5_I056
|
C
|
67S_L1_I011
|
C
|
77S_L4_I029
|
C
|
82S
|
C
|
86S_L5_I008
|
T
|
96S_L4_I026
|
C
|
GVF
|
C
|
India1
|
C
|
L2
|
C
|
S-f4_L4_I109
|
C
|
SAMN02486159
|
C
|
T3
|
C
|
Xcelris_11B
|
C
|
Xcelris_14A
|
C
|
Xcelris_1B
|
C
|
Xcelris_7
|
T
|
Xcelris_98
|
C
|
Y1-m2_L4_I122
|
C
|
YPt565
|
C
|
YPt648
|
C
|
Ypt569
|
C
|
Ypt572
|
C
|
Ypt577
|
C
|
Ypt579
|
C
|
Ypt580
|
C
|
Ypt581
|
C
|
Ypt583
|
C
|
Ypt586
|
C
|
Ypt588
|
C
|
Ypt589
|
C
|
Ypt592
|
C
|
Ypt593
|
C
|
Ypt606
|
C
|
Ypt623
|
C
|
Ypt638
|
C
|
Ypt642
|
C
|
Ypt643
|
C
|
Ypt646
|
C
|
Ypt647
|
C
|
Yt519
|
C
|
Yt520
|
C
|
Yt521
|
C
|
Yt522
|
C
|
Yt526
|
C
|
Yt527
|
C
|
Yt529
|
C
|
Yt531
|
C
|
Yt536
|
Y
|
Yt538
|
C
|
Yt539
|
Y
|
Yt540
|
C
|
ZJ1
|
T
|
production
|
C
|
ypt175_L2_I023
|
T
|
ypt2103
|
T
|
ypt2122
|
C
|
ypt2165
|
C
|
ypt2512
|
C
|
ypt2516
|
C
|
ypt2562
|
T
|
ypt2569
|
C
|
ypt2629
|
T
|
ypt2657
|
C
|
ypt2670
|
C
|
ypt2740
|
C
|
ypt2761
|
C
|
ypt2787
|
C
|
ypt2799
|
C
|
ypt2812
|
T
|
ypt2823
|
C
|
ypt2891_L3_I041
|
C
|
ypt2892
|
C
|
ypt3040
|
C
|
ypt3069
|
C
|
ypt3141
|
C
|
ypt3179_L8_I025
|
C
|
ypt3219_L1_I030
|
C
|
ypt3246_L6_I050
|
C
|
ypt3261_L7_I004
|
C
|
ypt922_L4_I012
|
T
|
ypt931
|
C
|
ypt945_L4_I031
|
C
|
ypt949_L3_I035
|
C
|
ypt956x
|
C
|
ypt962
|
C
|
ypt965
|
C
|
ypt974
|
C
|
ypt976_L7_I040
|
C
|
ypt977_L2_I041
|
C
|
ypt978_L2_I052
|
C
|
ypt980_L3_I043
|
C
|
ypt984
|
C
|
147209
|
C
|
147830
|
C
|
Ypt4000
|
C
|
Ypt4879
|
C
|