ChickenSD

ChickenSD / Individual SNP / ggaS0042002644885

Detail information of ggaS0042002644885

1.General Information

SNP ID: ggaS0042002644885
Organism: Gallus gallus
Individual: 16S_L5_I023

2.Allele information

Platform: SOLEXA
Method: sequence
SNP Class: SNP
Genotype: T

3.Reference Map information

Chrom Position Reference 16S_L5_I023
chr3 661 C T

4.Gene information

Var ID Gene ID Transcript ID Gene Symbol Variant Effect Biotype cDNA Position Allele Change Protein ID Protein Position Residue Change
ggaS0042002644885 - intergenic_variant => =>

5.Individual Genotype

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Individual Genotype
100S C
101S_L1_I028 C
102S_L3_I037 C
103S C
104S_L7_I029 C
105S_L3_I039 C
106S_L6_I030 C
107S_L2_I031 C
108S_L6_I032 C
109S_L5_I033 C
10S_L1_I052 C
111S_L3_I047 C
112S_L3_I035 C
113S_L1_I036 C
114S_L3_I037 C
116S_L6_I038 C
118S_L4_I040 C
119S_L3_I041 C
121S_L3_I042 C
122S_L4_I043 C
123S_L4_I044 C
124S_L2_I048 C
125S_L3_I050 C
126S_L3_I051 C
128S_L1_I042 C
129S_L3_I043 C
12S_L4_I011 C
130S_L4_I044 C
131S_L2_I045 C
132S_L2_I046 C
135S_L3_I048 C
15S_L6_I022 C
18833 C
18S_L7_I025 C
19297 C
19S_L4_I026 Y
1S C
20736 T
20S_L7_I027 C
21S_L6_I028 C
22S_L6_I029 C
23S_L2_I030 Y
25S_L3_I032 C
26S C
27S_L4_I034 T
28S_L4_I035 C
29S_L3_I036 C
2S C
30S_L2_I037 C
31S_L3_I038 C
32S_L1_I039 C
33S C
35S_L5_I041 C
36S_L5_I042 C
37S_L2_I043 C
38S_L6_I044 C
39S_L6_I053 C
3S_L4_I003 C
40S_L2_I054 C
41S_L5_I045 C
42S_L3_I055 C
43S T
44S_L4_I001 C
45S_L2_I002 C
47S_L3_I046 C
48S_L1_I004 C
49S_L1_I005 C
4S_L4_I004 C
50S_L1_I047 T
51S_L6_I048 C
52S_L2_I050 C
53S_L2_I006 Y
54S_L2_I007 C
55S_L1_I008 C
56S_L1_I010 C
57S_L3_I046 C
59S_L5_I052 Y
5S C
60S_L5_I053 C
61S_L8_I054 C
63S_L5_I056 C
64S_L4_I001 C
65S_L5_I002 C
67S_L1_I011 C
68S_L3_I012 C
69S C
6S C
70S C
71S_L3_I023 C
72S_L1_I024 C
73S_L1_I025 C
74S_L4_I026 C
75S_L3_I027 C
77S_L4_I029 Y
78S_L4_I030 Y
7S_L4_I007 C
80S_L3_I004 C
81S_L1_I005 T
82S C
83S_L3_I033 C
84S_L5_I006 C
85S_L5_I007 C
87S_L5_I010 C
89S_L6_I012 C
90S_L4_I021 C
91S_L4_I022 C
92S_L5_I023 C
93S_L7_I024 C
95S_L8_I025 C
97S_L8_I027 C
98S_L3_I034 C
99S_L2_I035 C
9S C
A1 C
A12 C
A14 C
A3 C
A8 C
BKL2 C
BLB1_L2_I007 C
BLB2_L2_I008 C
BLO1 C
BLO11 C
BLO15 C
BLO2 C
BLO3_L4_I022 C
BOJA2 C
BYW5_L2_I010 C
GVF C
India1 Y
India11 C
India13 C
India15 C
India17 C
India19 T
India21 C
India23 C
India25 C
India27 C
India31 Y
India33 C
India35 C
India37 C
India39 C
India41 C
India43 C
India47 C
India5 C
India51 C
India55 C
India57 C
India59 C
India61 C
India9 C
L2 C
N1 C
N11 Y
N13 C
N18 C
N3 C
N5 C
N7 T
N8 C
S-f1_L4_I106 C
S-f2_I107 C
S-f4_L4_I109 Y
S-m1_I101 C
S-m2_I102 C
S-m3_I103 C
S-m4_L2_I104 C
S-m5_I105 Y
SAMN02486156 C
SAMN02486157 C
SAMN02486158 C
SAMN02486159 C
SAMN02486160 C
SAMN02486161 C
SAMN02486162 C
SAMN02486163 Y
SAMN02486164 C
SAMN02486165 Y
SAMN02486166 C
SAMN02486167 Y
Silkia C
T2 C
T3 Y
T5 T
TD15 C
TD22 C
TD27 C
TD6 C
TD9 C
Tibet C
Xcelris_104 C
Xcelris_105 C
Xcelris_112 Y
Xcelris_113 C
Xcelris_114 C
Xcelris_11B C
Xcelris_12 C
Xcelris_128 C
Xcelris_129 C
Xcelris_14 C
Xcelris_141 Y
Xcelris_142 T
Xcelris_14B C
Xcelris_174 C
Xcelris_176 C
Xcelris_219 C
Xcelris_222 C
Xcelris_224 C
Xcelris_226 C
Xcelris_227 C
Xcelris_275 C
Xcelris_276 C
Xcelris_280 C
Xcelris_2A C
Xcelris_2B T
Xcelris_331 C
Xcelris_332 C
Xcelris_333 C
Xcelris_335 C
Xcelris_340 C
Xcelris_36 C
Xcelris_377 C
Xcelris_378 C
Xcelris_379 C
Xcelris_381 C
Xcelris_382 C
Xcelris_384 C
Xcelris_392 T
Xcelris_394 C
Xcelris_44 C
Xcelris_4A C
Xcelris_4B C
Xcelris_5 C
Xcelris_5A C
Xcelris_5B C
Xcelris_6A C
Xcelris_77 C
Xcelris_84 C
Xcelris_8B C
Xcelris_98 C
Xcelris_MT-134 C
Xcelris_MT-18 C
Xcelris_MT-46 C
Xcelris_MT-48 C
Xcelris_MT-85 C
Xcelris_MT-99 C
Y1-f1_L5_I119 C
Y1-f2_L6_I121 C
Y1-f3_L7_I101 C
Y1-m1_L6_I120 C
Y1-m2_L4_I122 C
Y1-m3_L7_I123 C
Y1-m4_I124 C
Y1-m5_L7_I102 C
YPt565 C
YPt601 C
YPt604 C
YPt609 C
YPt610 Y
YPt641 C
YPt648 Y
You1 C
You3_L7_I1000005 C
Ypt566 C
Ypt567 T
Ypt568 Y
Ypt569 Y
Ypt570 C
Ypt571 T
Ypt572 Y
Ypt573 C
Ypt574 C
Ypt575 Y
Ypt576 Y
Ypt577 C
Ypt578 C
Ypt579 C
Ypt580 C
Ypt581 C
Ypt582 C
Ypt583 C
Ypt584 C
Ypt585 C
Ypt586 C
Ypt587 C
Ypt588 C
Ypt589 C
Ypt590 C
Ypt591 C
Ypt592 C
Ypt593 C
Ypt594 C
Ypt595 C
Ypt596 C
Ypt597 C
Ypt598 C
Ypt599 C
Ypt600 C
Ypt602 C
Ypt603 Y
Ypt606 C
Ypt607 Y
Ypt608 C
Ypt622 C
Ypt624 C
Ypt626 C
Ypt638 T
Ypt640 C
Ypt643 C
Ypt645 C
Yt516 Y
Yt517 T
Yt518 Y
Yt519 Y
Yt520 C
Yt521 C
Yt522 Y
Yt523 C
Yt524 C
Yt525 T
Yt526 Y
Yt527 C
Yt528 C
Yt529 C
Yt530 Y
Yt531 C
Yt536 C
Yt538 C
Yt539 Y
Yt540 C
ZJ1 C
ZJ2 C
ZJ4 T
india3 C
india49 C
production C
yp914ypt C
ypt173_L2_I022 C
ypt175_L2_I023 C
ypt2041_L6_I002 C
ypt2053_L6_I004 Y
ypt2063_L6_I005 C
ypt2071_L1_I038 T
ypt2082 T
ypt2087 Y
ypt2091 C
ypt2092 T
ypt2093 C
ypt2094 C
ypt2095 Y
ypt2098 T
ypt2100 C
ypt2101 C
ypt2103 T
ypt2107 C
ypt2109 C
ypt2110 C
ypt2112 C
ypt2114 C
ypt2115 C
ypt2116 C
ypt2117 C
ypt2118 C
ypt2119 C
ypt2122 C
ypt2124_L4_I052 C
ypt2126_L3_I053 C
ypt2128_L6_I054 C
ypt2145_L6_I056 T
ypt2164 C
ypt2166 C
ypt2167 C
ypt2168 C
ypt2169 C
ypt2170 C
ypt2171 C
ypt2172 C
ypt2173 T
ypt2174 C
ypt2175 C
ypt2176 C
ypt2177 Y
ypt2178 C
ypt217_L2_I024 Y
ypt2184 C
ypt2185 C
ypt2186 Y
ypt2187 C
ypt2189 T
ypt2190 C
ypt2200 C
ypt2201 C
ypt2205 C
ypt2209 C
ypt220_L2_I026 C
ypt2214 C
ypt2215 C
ypt2216 C
ypt2217 C
ypt2218 C
ypt221_L3_I042 C
ypt2220 C
ypt2221 C
ypt2222 C
ypt222_L3_I027 C
ypt2437 C
ypt2438 C
ypt2439 C
ypt2440 C
ypt2441 C
ypt2442 C
ypt2444 C
ypt2445 C
ypt2446 C
ypt2447 C
ypt2448 C
ypt2454 C
ypt2459 C
ypt2497 C
ypt2498 C
ypt2499 C
ypt2500 C
ypt2503 C
ypt2504 C
ypt2512 C
ypt2516 C
ypt2521 C
ypt2523 C
ypt2534 C
ypt2541 C
ypt2545 C
ypt2552 C
ypt2562 C
ypt2569 C
ypt2570 C
ypt2571 C
ypt2573 Y
ypt2574 C
ypt2575 T
ypt2579 C
ypt258_L3_I028 C
ypt2598 C
ypt259_L2_I029 Y
ypt2606 C
ypt2608 C
ypt2615 T
ypt2622 C
ypt2623 C
ypt2624 C
ypt2625 C
ypt2627 C
ypt2628 C
ypt2629 C
ypt262_L3_I030 C
ypt2630 C
ypt2636 C
ypt2638 C
ypt263_L3_I031 C
ypt2640 C
ypt2641 C
ypt2643 C
ypt2644 C
ypt2646 T
ypt264_L3_I032 C
ypt2650 C
ypt2656 C
ypt2657 C
ypt2658 C
ypt2661 C
ypt2664 T
ypt2665 C
ypt2669 C
ypt2670 Y
ypt2671 C
ypt2672 C
ypt2673 C
ypt2678 C
ypt2722 Y
ypt2724 C
ypt2729 C
ypt2733 C
ypt2740 C
ypt2745 C
ypt2746 C
ypt2761 C
ypt2765 C
ypt2766 C
ypt2775 C
ypt2780 C
ypt2781 C
ypt2782 C
ypt2783 C
ypt2784 C
ypt2785 C
ypt2787 Y
ypt2788 Y
ypt2790 C
ypt2791 C
ypt2792 T
ypt2799 C
ypt2800 C
ypt2808 C
ypt2810 C
ypt2813 C
ypt2815 C
ypt2816 C
ypt2817 C
ypt2819 C
ypt2821 C
ypt2822 C
ypt2824 C
ypt2825 C
ypt2826 C
ypt2827 C
ypt2828 C
ypt2832 C
ypt2842 C
ypt2843 C
ypt2849 C
ypt2859 C
ypt2860 C
ypt2861 C
ypt2862 C
ypt2863 C
ypt2870 C
ypt2871 C
ypt2887 C
ypt2888 C
ypt2890_L3_I040 C
ypt2891_L3_I041 C
ypt2892 Y
ypt2893_L3_I025 C
ypt2894 C
ypt2895_L3_I026 C
ypt2902 C
ypt2909 T
ypt2910 C
ypt2911 C
ypt2912 C
ypt2918 C
ypt2930 Y
ypt3001 C
ypt3002 C
ypt3003 C
ypt3004 C
ypt3005 C
ypt3006 C
ypt3008 C
ypt3009 C
ypt3010 C
ypt3011 C
ypt3012 C
ypt3016 C
ypt3017 C
ypt3038 C
ypt3040 C
ypt3041 C
ypt3042 Y
ypt3043 C
ypt3044 C
ypt3045 C
ypt3046 C
ypt3047 T
ypt3050 C
ypt3051 C
ypt3052 C
ypt3069 Y
ypt3072 C
ypt3133 C
ypt3134 C
ypt3135 C
ypt3136 Y
ypt3138 C
ypt3139 C
ypt3140 C
ypt3141 C
ypt3142 C
ypt3143 C
ypt3144_L3_I039 C
ypt3145 Y
ypt3146 C
ypt3149_L2_I034 Y
ypt3150_L8_I023 C
ypt3159_L6_I035 Y
ypt3160_L8_I024 C
ypt3162_L6_I036 C
ypt3179_L8_I025 Y
ypt3180 T
ypt3189_L1_I040 C
ypt3190_L8_I026 C
ypt3191_L2_I041 C
ypt3195_L1_I042 C
ypt3196_L2_I043 C
ypt3197_L1_I044 C
ypt3205_L2_I047 C
ypt3206_L1_I048 C
ypt3211_L6_I052 Y
ypt3212_L4_I028 C
ypt3213_L8_I029 C
ypt3219_L1_I030 C
ypt3220_L1_I031 C
ypt3224_L8_I043 C
ypt3225_L2_I053 C
ypt3239_L1_I035 C
ypt3240_L6_I054 Y
ypt3241_L6_I055 T
ypt3247_L6_I051 C
ypt3257_L1_I056 C
ypt3259_L6_I002 C
ypt3262_L7_I005 C
ypt3270_L1_I007 C
ypt3271_L7_I008 C
ypt3272_L7_I010 C
ypt3274A_L7_I011 C
ypt3275_L1_I012 C
ypt3276_L7_I021 C
ypt3289_L8_I021 C
ypt47_L2_I029 C
ypt50_L2_I030 T
ypt53_L2_I032 C
ypt55_L1_I033 C
ypt890 C
ypt891 C
ypt898 C
ypt900_L2_I050 C
ypt901_L1_I052 C
ypt902_L1_I053 C
ypt903_L2_I054 C
ypt905_L6_I056 C
ypt906_L3_I001 C
ypt908_L1_I003 C
ypt910_L3_I005 T
ypt911_L6_I006 C
ypt912 C
ypt913 C
ypt915 C
ypt916 C
ypt917 C
ypt918_L3_I007 C
ypt920_L5_I010 C
ypt923_L2_I051 C
ypt925_L2_I022 C
ypt928 C
ypt931 C
ypt932 C
ypt933 C
ypt935 C
ypt936 C
ypt938x C
ypt940_L4_I026 C
ypt941_L5_I027 C
ypt942_L7_I028 C
ypt943 C
ypt944_L3_I030 C
ypt945_L4_I031 C
ypt946_L4_I032 C
ypt947_L5_I033 C
ypt948_L2_I034 C
ypt949_L3_I035 C
ypt950_L5_I036 C
ypt951 C
ypt952 C
ypt953 Y
ypt955 C
ypt956x Y
ypt957 C
ypt958 C
ypt959 C
ypt960 T
ypt961 Y
ypt962 Y
ypt963 C
ypt964 T
ypt965 Y
ypt966 C
ypt971 C
ypt972x Y
ypt973_L4_I037 Y
ypt974 C
ypt975_L8_I039 C
ypt976_L7_I040 C
ypt977_L2_I041 C
ypt978_L2_I052 C
ypt979_L6_I042 C
ypt980_L3_I043 C
ypt981_L2_I044 C
ypt982_L4_I045 C
ypt984 C
yptwj C
147209 C
147830 C
GLF_denovo C
Gallus_Sonneriatii_d C
Ypt4000 C
Ypt4879 C
Ypt4880 C