ChickenSD
Detail information of ggaS0042002477789
1.General Information
| SNP ID: |
ggaS0042002477789 |
| Organism: |
Gallus gallus |
| Individual: |
16S_L5_I023 |
2.Allele information
| Platform: |
SOLEXA |
| Method: |
sequence |
| SNP Class: |
SNP |
| Genotype: |
A |
3.Reference Map information
| Chrom |
Position |
Reference |
16S_L5_I023
|
| chr22
|
3804
|
G
|
A
|
4.Gene information
| Var ID |
Gene ID |
Transcript ID |
Gene Symbol |
Variant Effect |
Biotype |
cDNA Position |
Allele Change |
Protein ID |
Protein Position |
Residue Change |
| ggaS0042002477789 |
-
|
|
|
intergenic_variant |
|
|
=>
|
|
|
=>
|
5.Individual Genotype
| Individual |
Genotype |
|
100S
|
G
|
|
101S_L1_I028
|
A
|
|
104S_L7_I029
|
G
|
|
106S_L6_I030
|
G
|
|
107S_L2_I031
|
G
|
|
10S_L1_I052
|
G
|
|
110S_L4_I034
|
A
|
|
111S_L3_I047
|
R
|
|
116S_L6_I038
|
G
|
|
117S_L2_I039
|
G
|
|
118S_L4_I040
|
G
|
|
11S
|
G
|
|
120S_L1_I041
|
G
|
|
121S_L3_I042
|
G
|
|
122S_L4_I043
|
G
|
|
123S_L4_I044
|
G
|
|
126S_L3_I051
|
G
|
|
127S_L2_I045
|
G
|
|
128S_L1_I042
|
G
|
|
12S_L4_I011
|
G
|
|
130S_L4_I044
|
G
|
|
131S_L2_I045
|
G
|
|
133S_L8_I046
|
G
|
|
134S_L2_I047
|
G
|
|
13S_L7_I012
|
G
|
|
14S_L2_I021
|
G
|
|
15S_L6_I022
|
R
|
|
17S_L3_I024
|
G
|
|
19297
|
A
|
|
19912
|
G
|
|
19S_L4_I026
|
G
|
|
21S_L6_I028
|
G
|
|
22S_L6_I029
|
G
|
|
23S_L2_I030
|
G
|
|
24S_L4_I031
|
G
|
|
25S_L3_I032
|
G
|
|
26S
|
G
|
|
28S_L4_I035
|
G
|
|
29S_L3_I036
|
G
|
|
2S
|
G
|
|
31S_L3_I038
|
R
|
|
32S_L1_I039
|
G
|
|
35S_L5_I041
|
G
|
|
38S_L6_I044
|
A
|
|
39S_L6_I053
|
G
|
|
40S_L2_I054
|
G
|
|
41S_L5_I045
|
G
|
|
42S_L3_I055
|
G
|
|
43S
|
R
|
|
44S_L4_I001
|
G
|
|
45S_L2_I002
|
G
|
|
46S_L4_I003
|
R
|
|
48S_L1_I004
|
G
|
|
49S_L1_I005
|
G
|
|
4S_L4_I004
|
G
|
|
50S_L1_I047
|
G
|
|
51S_L6_I048
|
G
|
|
52S_L2_I050
|
G
|
|
53S_L2_I006
|
G
|
|
54S_L2_I007
|
G
|
|
55S_L1_I008
|
G
|
|
56S_L1_I010
|
G
|
|
57S_L3_I046
|
G
|
|
59S_L5_I052
|
R
|
|
5S
|
G
|
|
61S_L8_I054
|
G
|
|
62S_L8_I055
|
R
|
|
64S_L4_I001
|
G
|
|
65S_L5_I002
|
G
|
|
67S_L1_I011
|
G
|
|
68S_L3_I012
|
G
|
|
69S
|
G
|
|
72S_L1_I024
|
G
|
|
73S_L1_I025
|
R
|
|
74S_L4_I026
|
G
|
|
75S_L3_I027
|
G
|
|
77S_L4_I029
|
A
|
|
78S_L4_I030
|
G
|
|
7S_L4_I007
|
G
|
|
80S_L3_I004
|
G
|
|
81S_L1_I005
|
G
|
|
82S
|
G
|
|
83S_L3_I033
|
G
|
|
84S_L5_I006
|
G
|
|
87S_L5_I010
|
G
|
|
88S_L4_I011
|
G
|
|
90S_L4_I021
|
G
|
|
91S_L4_I022
|
G
|
|
92S_L5_I023
|
G
|
|
93S_L7_I024
|
G
|
|
95S_L8_I025
|
G
|
|
96S_L4_I026
|
G
|
|
97S_L8_I027
|
G
|
|
98S_L3_I034
|
G
|
|
A1
|
R
|
|
A10
|
G
|
|
A12
|
G
|
|
A14
|
G
|
|
A3
|
G
|
|
A8
|
G
|
|
BKL2
|
G
|
|
BLO2
|
G
|
|
India13
|
G
|
|
India19
|
G
|
|
India25
|
G
|
|
India27
|
G
|
|
India29
|
G
|
|
India31
|
G
|
|
India35
|
G
|
|
India37
|
G
|
|
India39
|
R
|
|
India43
|
G
|
|
India45
|
R
|
|
India47
|
G
|
|
India5
|
G
|
|
India51
|
G
|
|
India55
|
G
|
|
India59
|
R
|
|
L2
|
G
|
|
N13
|
G
|
|
N18
|
G
|
|
N3
|
G
|
|
N5
|
G
|
|
N7
|
G
|
|
N8
|
G
|
|
S-f1_L4_I106
|
A
|
|
S-m1_I101
|
G
|
|
SAMN02486157
|
G
|
|
SAMN02486160
|
A
|
|
SAMN02486163
|
G
|
|
SAMN02486166
|
G
|
|
SAMN02486167
|
A
|
|
Silkia
|
G
|
|
T2
|
G
|
|
T3
|
G
|
|
TD1
|
R
|
|
TD12
|
R
|
|
TD15
|
G
|
|
TD22
|
G
|
|
TD27
|
G
|
|
TD6
|
G
|
|
Tibet
|
G
|
|
Xcelris_10
|
G
|
|
Xcelris_104
|
G
|
|
Xcelris_112
|
G
|
|
Xcelris_12
|
G
|
|
Xcelris_127
|
G
|
|
Xcelris_128
|
G
|
|
Xcelris_129
|
G
|
|
Xcelris_12A
|
G
|
|
Xcelris_137
|
G
|
|
Xcelris_13B
|
G
|
|
Xcelris_144
|
G
|
|
Xcelris_14A
|
G
|
|
Xcelris_14B
|
G
|
|
Xcelris_174
|
G
|
|
Xcelris_1B
|
G
|
|
Xcelris_219
|
G
|
|
Xcelris_221
|
G
|
|
Xcelris_222
|
G
|
|
Xcelris_224
|
G
|
|
Xcelris_226
|
G
|
|
Xcelris_227
|
G
|
|
Xcelris_280
|
G
|
|
Xcelris_2A
|
G
|
|
Xcelris_331
|
G
|
|
Xcelris_332
|
G
|
|
Xcelris_333
|
G
|
|
Xcelris_335
|
G
|
|
Xcelris_339
|
G
|
|
Xcelris_341
|
G
|
|
Xcelris_377
|
G
|
|
Xcelris_378
|
G
|
|
Xcelris_379
|
G
|
|
Xcelris_380
|
G
|
|
Xcelris_381
|
G
|
|
Xcelris_382
|
G
|
|
Xcelris_383
|
G
|
|
Xcelris_385
|
G
|
|
Xcelris_392
|
A
|
|
Xcelris_394
|
G
|
|
Xcelris_67
|
G
|
|
Xcelris_6A
|
G
|
|
Xcelris_6B
|
R
|
|
Xcelris_7
|
G
|
|
Xcelris_77
|
G
|
|
Xcelris_84
|
G
|
|
Xcelris_8A
|
G
|
|
Xcelris_8B
|
A
|
|
Xcelris_90
|
G
|
|
Xcelris_97
|
G
|
|
Xcelris_98
|
G
|
|
Xcelris_MT-18
|
G
|
|
Xcelris_MT-38
|
G
|
|
Xcelris_MT-48
|
G
|
|
Xcelris_MT-85
|
G
|
|
Xcelris_MT-99
|
G
|
|
Y1-f1_L5_I119
|
R
|
|
Y1-f2_L6_I121
|
A
|
|
Y1-m1_L6_I120
|
G
|
|
Y1-m5_L7_I102
|
G
|
|
YPt565
|
G
|
|
YPt641
|
G
|
|
YPt648
|
G
|
|
You1
|
R
|
|
You3_L7_I1000005
|
G
|
|
Ypt568
|
G
|
|
Ypt572
|
G
|
|
Ypt574
|
G
|
|
Ypt575
|
G
|
|
Ypt576
|
G
|
|
Ypt581
|
G
|
|
Ypt582
|
G
|
|
Ypt583
|
G
|
|
Ypt585
|
G
|
|
Ypt586
|
G
|
|
Ypt588
|
G
|
|
Ypt589
|
G
|
|
Ypt596
|
G
|
|
Ypt597
|
G
|
|
Ypt599
|
G
|
|
Ypt600
|
G
|
|
Ypt608
|
G
|
|
Ypt623
|
G
|
|
Ypt626
|
G
|
|
Ypt638
|
G
|
|
Ypt640
|
A
|
|
Ypt642
|
G
|
|
Ypt643
|
G
|
|
Ypt645
|
G
|
|
Ypt647
|
R
|
|
Yt516
|
A
|
|
Yt517
|
G
|
|
Yt518
|
G
|
|
Yt520
|
G
|
|
Yt522
|
G
|
|
Yt524
|
G
|
|
Yt525
|
G
|
|
Yt526
|
G
|
|
Yt527
|
R
|
|
Yt528
|
G
|
|
Yt529
|
A
|
|
Yt530
|
G
|
|
Yt531
|
G
|
|
Yt536
|
A
|
|
Yt539
|
G
|
|
Yt540
|
G
|
|
ZJ4
|
G
|
|
yp914ypt
|
G
|
|
ypt171_L2_I021
|
G
|
|
ypt173_L2_I022
|
G
|
|
ypt175_L2_I023
|
G
|
|
ypt2041_L6_I002
|
G
|
|
ypt2086
|
G
|
|
ypt2092
|
R
|
|
ypt2093
|
G
|
|
ypt2094
|
G
|
|
ypt2095
|
G
|
|
ypt2098
|
G
|
|
ypt2100
|
G
|
|
ypt2101
|
G
|
|
ypt2102
|
G
|
|
ypt2103
|
G
|
|
ypt2106
|
R
|
|
ypt2107
|
G
|
|
ypt2109
|
G
|
|
ypt2110
|
G
|
|
ypt2114
|
G
|
|
ypt2117
|
G
|
|
ypt2120
|
G
|
|
ypt2124_L4_I052
|
G
|
|
ypt2128_L6_I054
|
G
|
|
ypt2164
|
R
|
|
ypt2165
|
G
|
|
ypt2166
|
G
|
|
ypt2167
|
G
|
|
ypt2168
|
G
|
|
ypt2170
|
G
|
|
ypt2171
|
G
|
|
ypt2172
|
A
|
|
ypt2174
|
G
|
|
ypt2175
|
G
|
|
ypt2176
|
G
|
|
ypt2177
|
G
|
|
ypt2178
|
A
|
|
ypt2184
|
G
|
|
ypt2185
|
G
|
|
ypt2186
|
R
|
|
ypt2187
|
G
|
|
ypt2189
|
A
|
|
ypt2190
|
A
|
|
ypt2201
|
G
|
|
ypt2205
|
G
|
|
ypt2209
|
G
|
|
ypt220_L2_I026
|
G
|
|
ypt2216
|
A
|
|
ypt2217
|
A
|
|
ypt2219
|
R
|
|
ypt221_L3_I042
|
G
|
|
ypt2220
|
A
|
|
ypt222_L3_I027
|
G
|
|
ypt2438
|
G
|
|
ypt2439
|
G
|
|
ypt2442
|
G
|
|
ypt2443
|
A
|
|
ypt2444
|
R
|
|
ypt2448
|
G
|
|
ypt2449
|
G
|
|
ypt2454
|
G
|
|
ypt2468
|
G
|
|
ypt2496
|
G
|
|
ypt2497
|
G
|
|
ypt2498
|
G
|
|
ypt2499
|
G
|
|
ypt2504
|
G
|
|
ypt2507
|
G
|
|
ypt2512
|
G
|
|
ypt2521
|
G
|
|
ypt2523
|
G
|
|
ypt2534
|
G
|
|
ypt2543
|
G
|
|
ypt2544
|
G
|
|
ypt2546
|
G
|
|
ypt2547
|
G
|
|
ypt2552
|
R
|
|
ypt2562
|
G
|
|
ypt2563
|
G
|
|
ypt2571
|
A
|
|
ypt2572
|
G
|
|
ypt2573
|
G
|
|
ypt258_L3_I028
|
G
|
|
ypt2598
|
G
|
|
ypt259_L2_I029
|
G
|
|
ypt2601
|
G
|
|
ypt2606
|
G
|
|
ypt2608
|
G
|
|
ypt2622
|
G
|
|
ypt2623
|
G
|
|
ypt2624
|
G
|
|
ypt2627
|
R
|
|
ypt2628
|
G
|
|
ypt262_L3_I030
|
G
|
|
ypt2638
|
A
|
|
ypt263_L3_I031
|
G
|
|
ypt2641
|
G
|
|
ypt2643
|
G
|
|
ypt2644
|
G
|
|
ypt2646
|
R
|
|
ypt264_L3_I032
|
G
|
|
ypt2650
|
G
|
|
ypt2653
|
R
|
|
ypt2657
|
G
|
|
ypt2658
|
G
|
|
ypt2661
|
G
|
|
ypt2664
|
G
|
|
ypt2665
|
G
|
|
ypt2669
|
G
|
|
ypt2670
|
G
|
|
ypt2671
|
G
|
|
ypt2672
|
G
|
|
ypt2673
|
G
|
|
ypt2678
|
G
|
|
ypt2722
|
R
|
|
ypt2724
|
G
|
|
ypt2733
|
G
|
|
ypt2739
|
R
|
|
ypt2745
|
G
|
|
ypt2746
|
G
|
|
ypt2761
|
G
|
|
ypt2765
|
G
|
|
ypt2766
|
G
|
|
ypt2782
|
G
|
|
ypt2783
|
R
|
|
ypt2784
|
G
|
|
ypt2785
|
G
|
|
ypt2787
|
A
|
|
ypt2788
|
G
|
|
ypt2790
|
G
|
|
ypt2791
|
G
|
|
ypt2792
|
G
|
|
ypt2799
|
G
|
|
ypt2800
|
G
|
|
ypt2808
|
G
|
|
ypt2813
|
G
|
|
ypt2814
|
G
|
|
ypt2816
|
G
|
|
ypt2817
|
G
|
|
ypt2819
|
G
|
|
ypt2821
|
G
|
|
ypt2822
|
G
|
|
ypt2823
|
G
|
|
ypt2824
|
G
|
|
ypt2825
|
G
|
|
ypt2828
|
R
|
|
ypt2831
|
G
|
|
ypt2832
|
G
|
|
ypt2842
|
G
|
|
ypt2843
|
G
|
|
ypt2849
|
G
|
|
ypt2859
|
G
|
|
ypt2871
|
G
|
|
ypt2894
|
G
|
|
ypt2909
|
G
|
|
ypt2912
|
G
|
|
ypt2918
|
G
|
|
ypt2929
|
G
|
|
ypt2930
|
G
|
|
ypt3002
|
G
|
|
ypt3003
|
G
|
|
ypt3004
|
R
|
|
ypt3006
|
G
|
|
ypt3007
|
R
|
|
ypt3008
|
G
|
|
ypt3009
|
G
|
|
ypt3010
|
G
|
|
ypt3011
|
G
|
|
ypt3016
|
R
|
|
ypt3040
|
G
|
|
ypt3043
|
G
|
|
ypt3044
|
G
|
|
ypt3045
|
G
|
|
ypt3046
|
G
|
|
ypt3047
|
G
|
|
ypt3050
|
G
|
|
ypt3051
|
A
|
|
ypt3072
|
G
|
|
ypt3139
|
G
|
|
ypt3142
|
A
|
|
ypt3145
|
G
|
|
ypt3150_L8_I023
|
G
|
|
ypt3159_L6_I035
|
A
|
|
ypt3160_L8_I024
|
G
|
|
ypt3162_L6_I036
|
G
|
|
ypt3179_L8_I025
|
G
|
|
ypt3181_L7_I038
|
R
|
|
ypt3182_L1_I039
|
R
|
|
ypt3189_L1_I040
|
G
|
|
ypt3190_L8_I026
|
G
|
|
ypt3191_L2_I041
|
G
|
|
ypt3195_L1_I042
|
G
|
|
ypt3197_L1_I044
|
G
|
|
ypt3198_L2_I045
|
G
|
|
ypt3205_L2_I047
|
G
|
|
ypt3211_L6_I052
|
G
|
|
ypt3220_L1_I031
|
G
|
|
ypt3222_L1_I033
|
G
|
|
ypt3224_L8_I043
|
G
|
|
ypt3225_L2_I053
|
G
|
|
ypt3226_L3_I044
|
G
|
|
ypt3229_L8_I045
|
G
|
|
ypt3238_L3_I046
|
G
|
|
ypt3245
|
G
|
|
ypt3246_L6_I050
|
G
|
|
ypt3247_L6_I051
|
G
|
|
ypt3257_L1_I056
|
G
|
|
ypt3261_L7_I004
|
G
|
|
ypt3262_L7_I005
|
G
|
|
ypt3269_L7_I006
|
G
|
|
ypt3270_L1_I007
|
G
|
|
ypt3271_L7_I008
|
G
|
|
ypt3272_L7_I010
|
G
|
|
ypt3274A_L7_I011
|
G
|
|
ypt3289_L8_I021
|
G
|
|
ypt47_L2_I029
|
G
|
|
ypt53_L2_I032
|
G
|
|
ypt55_L1_I033
|
G
|
|
ypt890
|
G
|
|
ypt891
|
G
|
|
ypt897_L3_I048
|
G
|
|
ypt899_L6_I051
|
G
|
|
ypt901_L1_I052
|
G
|
|
ypt902_L1_I053
|
G
|
|
ypt903_L2_I054
|
G
|
|
ypt904_L4_I055
|
G
|
|
ypt905_L6_I056
|
G
|
|
ypt906_L3_I001
|
G
|
|
ypt907_L6_I002
|
G
|
|
ypt909_L5_I004
|
G
|
|
ypt910_L3_I005
|
A
|
|
ypt911_L6_I006
|
G
|
|
ypt919_L4_I008
|
G
|
|
ypt920_L5_I010
|
G
|
|
ypt921_L8_I011
|
R
|
|
ypt922_L4_I012
|
G
|
|
ypt923_L2_I051
|
G
|
|
ypt925_L2_I022
|
G
|
|
ypt926_L2_I023
|
G
|
|
ypt928
|
A
|
|
ypt929
|
G
|
|
ypt930
|
G
|
|
ypt931
|
G
|
|
ypt933
|
G
|
|
ypt934x
|
G
|
|
ypt936
|
G
|
|
ypt938x
|
G
|
|
ypt940_L4_I026
|
G
|
|
ypt941_L5_I027
|
R
|
|
ypt942_L7_I028
|
A
|
|
ypt944_L3_I030
|
G
|
|
ypt948_L2_I034
|
G
|
|
ypt949_L3_I035
|
G
|
|
ypt955
|
G
|
|
ypt956x
|
G
|
|
ypt957
|
R
|
|
ypt958
|
G
|
|
ypt961
|
G
|
|
ypt965
|
G
|
|
ypt971
|
G
|
|
ypt972x
|
G
|
|
ypt973_L4_I037
|
G
|
|
ypt978_L2_I052
|
G
|
|
ypt979_L6_I042
|
G
|
|
ypt980_L3_I043
|
G
|
|
ypt982_L4_I045
|
G
|
|
ypt984
|
G
|
|
147209
|
G
|
|
147830
|
G
|
