ChickenSD
Detail information of ggaS0042001340768
1.General Information
| SNP ID: |
ggaS0042001340768 |
| Organism: |
Gallus gallus |
| Individual: |
16S_L5_I023 |
2.Allele information
| Platform: |
SOLEXA |
| Method: |
sequence |
| SNP Class: |
SNP |
| Genotype: |
C |
3.Reference Map information
| Chrom |
Position |
Reference |
16S_L5_I023
|
| chr14
|
10158
|
G
|
C
|
4.Gene information
| Var ID |
Gene ID |
Transcript ID |
Gene Symbol |
Variant Effect |
Biotype |
cDNA Position |
Allele Change |
Protein ID |
Protein Position |
Residue Change |
| ggaS0042001340768 |
-
|
|
|
intergenic_variant |
|
|
=>
|
|
|
=>
|
5.Individual Genotype
| Individual |
Genotype |
|
102S_L3_I037
|
G
|
|
103S
|
G
|
|
104S_L7_I029
|
G
|
|
106S_L6_I030
|
C
|
|
109S_L5_I033
|
G
|
|
110S_L4_I034
|
G
|
|
111S_L3_I047
|
S
|
|
118S_L4_I040
|
G
|
|
120S_L1_I041
|
S
|
|
126S_L3_I051
|
G
|
|
129S_L3_I043
|
C
|
|
130S_L4_I044
|
C
|
|
13S_L7_I012
|
G
|
|
14S_L2_I021
|
G
|
|
18833
|
S
|
|
19297
|
G
|
|
19912
|
S
|
|
19S_L4_I026
|
C
|
|
20736
|
G
|
|
21S_L6_I028
|
C
|
|
23S_L2_I030
|
C
|
|
27S_L4_I034
|
C
|
|
30S_L2_I037
|
G
|
|
33S
|
G
|
|
35S_L5_I041
|
G
|
|
36S_L5_I042
|
G
|
|
38S_L6_I044
|
G
|
|
39S_L6_I053
|
C
|
|
42S_L3_I055
|
C
|
|
43S
|
C
|
|
44S_L4_I001
|
G
|
|
45S_L2_I002
|
G
|
|
46S_L4_I003
|
S
|
|
49S_L1_I005
|
G
|
|
50S_L1_I047
|
G
|
|
52S_L2_I050
|
C
|
|
53S_L2_I006
|
G
|
|
55S_L1_I008
|
C
|
|
57S_L3_I046
|
G
|
|
58S_L4_I051
|
G
|
|
62S_L8_I055
|
G
|
|
63S_L5_I056
|
S
|
|
65S_L5_I002
|
G
|
|
68S_L3_I012
|
G
|
|
69S
|
G
|
|
6S
|
G
|
|
70S
|
G
|
|
74S_L4_I026
|
S
|
|
75S_L3_I027
|
G
|
|
77S_L4_I029
|
C
|
|
79S_L2_I031
|
C
|
|
80S_L3_I004
|
C
|
|
83S_L3_I033
|
G
|
|
86S_L5_I008
|
G
|
|
87S_L5_I010
|
G
|
|
88S_L4_I011
|
G
|
|
98S_L3_I034
|
C
|
|
A1
|
G
|
|
A12
|
C
|
|
A14
|
C
|
|
A3
|
C
|
|
BKL2
|
C
|
|
India1
|
C
|
|
India11
|
G
|
|
India13
|
C
|
|
India17
|
C
|
|
India19
|
G
|
|
India21
|
G
|
|
India25
|
G
|
|
India33
|
C
|
|
India37
|
S
|
|
India39
|
C
|
|
India43
|
G
|
|
India45
|
G
|
|
India47
|
C
|
|
India5
|
G
|
|
India57
|
C
|
|
India59
|
G
|
|
India61
|
S
|
|
India9
|
G
|
|
L2
|
C
|
|
N1
|
C
|
|
N11
|
C
|
|
N13
|
G
|
|
N18
|
C
|
|
N5
|
C
|
|
N7
|
C
|
|
N8
|
C
|
|
S-f2_I107
|
C
|
|
S-f3_I108
|
C
|
|
S-f4_L4_I109
|
G
|
|
S-m2_I102
|
C
|
|
S-m3_I103
|
S
|
|
SAMN02486158
|
S
|
|
SAMN02486159
|
C
|
|
SAMN02486163
|
G
|
|
SAMN02486164
|
G
|
|
SAMN02486165
|
G
|
|
SAMN02486166
|
G
|
|
SAMN02486167
|
C
|
|
Silkia
|
S
|
|
T3
|
S
|
|
T5
|
S
|
|
TD12
|
G
|
|
TD15
|
G
|
|
TD22
|
G
|
|
TD27
|
C
|
|
TD30
|
C
|
|
TD6
|
G
|
|
TD9
|
C
|
|
Tibet
|
C
|
|
Xcelris_10B
|
G
|
|
Xcelris_114
|
G
|
|
Xcelris_12
|
G
|
|
Xcelris_14A
|
G
|
|
Xcelris_1B
|
G
|
|
Xcelris_219
|
S
|
|
Xcelris_226
|
C
|
|
Xcelris_335
|
G
|
|
Xcelris_379
|
C
|
|
Xcelris_380
|
G
|
|
Xcelris_381
|
G
|
|
Xcelris_382
|
G
|
|
Xcelris_383
|
S
|
|
Xcelris_4B
|
G
|
|
Xcelris_6A
|
G
|
|
Xcelris_6B
|
S
|
|
Xcelris_7
|
G
|
|
Xcelris_84
|
C
|
|
Xcelris_8A
|
G
|
|
Xcelris_90
|
C
|
|
Y1-f2_L6_I121
|
G
|
|
Y1-f3_L7_I101
|
G
|
|
Y1-m1_L6_I120
|
G
|
|
Y1-m2_L4_I122
|
C
|
|
YPt565
|
G
|
|
YPt601
|
G
|
|
YPt604
|
C
|
|
YPt610
|
C
|
|
YPt637
|
C
|
|
YPt641
|
G
|
|
YPt648
|
C
|
|
Ypt566
|
C
|
|
Ypt567
|
G
|
|
Ypt568
|
C
|
|
Ypt569
|
S
|
|
Ypt570
|
G
|
|
Ypt571
|
S
|
|
Ypt572
|
C
|
|
Ypt573
|
C
|
|
Ypt574
|
S
|
|
Ypt575
|
S
|
|
Ypt578
|
G
|
|
Ypt579
|
G
|
|
Ypt580
|
G
|
|
Ypt581
|
G
|
|
Ypt582
|
G
|
|
Ypt583
|
G
|
|
Ypt584
|
G
|
|
Ypt585
|
G
|
|
Ypt586
|
G
|
|
Ypt587
|
G
|
|
Ypt588
|
G
|
|
Ypt589
|
S
|
|
Ypt590
|
G
|
|
Ypt591
|
G
|
|
Ypt592
|
G
|
|
Ypt593
|
G
|
|
Ypt594
|
G
|
|
Ypt596
|
G
|
|
Ypt597
|
G
|
|
Ypt598
|
G
|
|
Ypt599
|
G
|
|
Ypt600
|
G
|
|
Ypt602
|
C
|
|
Ypt603
|
C
|
|
Ypt606
|
G
|
|
Ypt607
|
S
|
|
Ypt608
|
S
|
|
Ypt622
|
S
|
|
Ypt624
|
G
|
|
Ypt626
|
C
|
|
Ypt638
|
S
|
|
Ypt640
|
S
|
|
Ypt642
|
C
|
|
Ypt643
|
G
|
|
Ypt645
|
G
|
|
Ypt646
|
S
|
|
Ypt647
|
G
|
|
Yt516
|
C
|
|
Yt517
|
S
|
|
Yt518
|
C
|
|
Yt519
|
C
|
|
Yt520
|
S
|
|
Yt521
|
C
|
|
Yt522
|
C
|
|
Yt523
|
G
|
|
Yt524
|
G
|
|
Yt525
|
C
|
|
Yt526
|
C
|
|
Yt527
|
G
|
|
Yt528
|
S
|
|
Yt529
|
S
|
|
Yt530
|
C
|
|
Yt531
|
C
|
|
Yt536
|
S
|
|
Yt538
|
G
|
|
Yt539
|
S
|
|
Yt540
|
G
|
|
ZJ2
|
S
|
|
ZJ3
|
S
|
|
ZJ4
|
C
|
|
india3
|
G
|
|
india49
|
G
|
|
production
|
G
|
|
ypt170_L2_I012
|
C
|
|
ypt171_L2_I021
|
G
|
|
ypt2041_L6_I002
|
G
|
|
ypt2063_L6_I005
|
G
|
|
ypt2094
|
C
|
|
ypt2095
|
G
|
|
ypt2100
|
G
|
|
ypt2102
|
G
|
|
ypt2109
|
G
|
|
ypt2110
|
C
|
|
ypt2112
|
G
|
|
ypt2114
|
C
|
|
ypt2118
|
C
|
|
ypt2164
|
G
|
|
ypt2165
|
C
|
|
ypt2166
|
G
|
|
ypt2167
|
C
|
|
ypt2170
|
C
|
|
ypt2172
|
G
|
|
ypt2173
|
C
|
|
ypt2174
|
C
|
|
ypt2175
|
G
|
|
ypt217_L2_I024
|
G
|
|
ypt2184
|
C
|
|
ypt2186
|
C
|
|
ypt2190
|
C
|
|
ypt2191
|
G
|
|
ypt2200
|
G
|
|
ypt2205
|
G
|
|
ypt2209
|
G
|
|
ypt220_L2_I026
|
C
|
|
ypt2214
|
C
|
|
ypt2215
|
C
|
|
ypt2216
|
C
|
|
ypt2217
|
C
|
|
ypt2218
|
C
|
|
ypt2221
|
G
|
|
ypt2222
|
G
|
|
ypt222_L3_I027
|
G
|
|
ypt2438
|
C
|
|
ypt2441
|
G
|
|
ypt2443
|
G
|
|
ypt2444
|
S
|
|
ypt2454
|
G
|
|
ypt2496
|
S
|
|
ypt2504
|
G
|
|
ypt2516
|
C
|
|
ypt2523
|
C
|
|
ypt2546
|
G
|
|
ypt2547
|
G
|
|
ypt2562
|
G
|
|
ypt2569
|
S
|
|
ypt2571
|
G
|
|
ypt2572
|
S
|
|
ypt2573
|
C
|
|
ypt2575
|
G
|
|
ypt258_L3_I028
|
C
|
|
ypt259_L2_I029
|
C
|
|
ypt2615
|
C
|
|
ypt2625
|
G
|
|
ypt2629
|
G
|
|
ypt262_L3_I030
|
G
|
|
ypt2630
|
G
|
|
ypt2638
|
G
|
|
ypt263_L3_I031
|
C
|
|
ypt2644
|
C
|
|
ypt2646
|
C
|
|
ypt264_L3_I032
|
G
|
|
ypt2650
|
G
|
|
ypt2653
|
S
|
|
ypt2658
|
G
|
|
ypt2664
|
G
|
|
ypt2669
|
C
|
|
ypt2670
|
G
|
|
ypt2672
|
C
|
|
ypt2678
|
G
|
|
ypt2706
|
G
|
|
ypt2739
|
G
|
|
ypt2740
|
S
|
|
ypt2746
|
G
|
|
ypt2765
|
G
|
|
ypt2766
|
G
|
|
ypt2775
|
G
|
|
ypt2780
|
G
|
|
ypt2784
|
S
|
|
ypt2785
|
G
|
|
ypt2787
|
C
|
|
ypt2789
|
C
|
|
ypt2791
|
C
|
|
ypt2800
|
G
|
|
ypt2812
|
G
|
|
ypt2813
|
G
|
|
ypt2814
|
G
|
|
ypt2825
|
C
|
|
ypt2828
|
G
|
|
ypt2832
|
C
|
|
ypt2842
|
C
|
|
ypt2843
|
C
|
|
ypt2859
|
C
|
|
ypt2892
|
C
|
|
ypt2893_L3_I025
|
G
|
|
ypt2894
|
C
|
|
ypt2902
|
C
|
|
ypt2909
|
G
|
|
ypt2910
|
G
|
|
ypt2912
|
G
|
|
ypt3001
|
C
|
|
ypt3003
|
S
|
|
ypt3004
|
C
|
|
ypt3006
|
G
|
|
ypt3007
|
G
|
|
ypt3008
|
C
|
|
ypt3009
|
G
|
|
ypt3012
|
C
|
|
ypt3016
|
G
|
|
ypt3017
|
S
|
|
ypt3038
|
G
|
|
ypt3040
|
C
|
|
ypt3041
|
C
|
|
ypt3042
|
C
|
|
ypt3043
|
G
|
|
ypt3044
|
C
|
|
ypt3046
|
C
|
|
ypt3047
|
C
|
|
ypt3050
|
C
|
|
ypt3052
|
C
|
|
ypt3061
|
C
|
|
ypt3069
|
G
|
|
ypt3133
|
C
|
|
ypt3134
|
S
|
|
ypt3140
|
S
|
|
ypt3141
|
C
|
|
ypt3145
|
G
|
|
ypt3146
|
G
|
|
ypt3149_L2_I034
|
G
|
|
ypt3150_L8_I023
|
G
|
|
ypt3159_L6_I035
|
C
|
|
ypt3160_L8_I024
|
S
|
|
ypt3179_L8_I025
|
S
|
|
ypt3180
|
S
|
|
ypt3182_L1_I039
|
G
|
|
ypt3189_L1_I040
|
G
|
|
ypt3190_L8_I026
|
G
|
|
ypt3191_L2_I041
|
C
|
|
ypt3193_L1_I027
|
C
|
|
ypt3195_L1_I042
|
G
|
|
ypt3196_L2_I043
|
C
|
|
ypt3197_L1_I044
|
C
|
|
ypt3210_L6_I051
|
G
|
|
ypt3213_L8_I029
|
G
|
|
ypt3220_L1_I031
|
G
|
|
ypt3246_L6_I050
|
G
|
|
ypt3261_L7_I004
|
G
|
|
ypt3262_L7_I005
|
S
|
|
ypt3272_L7_I010
|
C
|
|
ypt891
|
G
|
|
ypt903_L2_I054
|
C
|
|
ypt904_L4_I055
|
G
|
|
ypt905_L6_I056
|
G
|
|
ypt906_L3_I001
|
G
|
|
ypt907_L6_I002
|
S
|
|
ypt915
|
G
|
|
ypt920_L5_I010
|
G
|
|
ypt921_L8_I011
|
S
|
|
ypt922_L4_I012
|
G
|
|
ypt925_L2_I022
|
C
|
|
ypt926_L2_I023
|
G
|
|
ypt929
|
C
|
|
ypt942_L7_I028
|
G
|
|
ypt943
|
G
|
|
ypt944_L3_I030
|
G
|
|
ypt945_L4_I031
|
C
|
|
ypt949_L3_I035
|
G
|
|
ypt950_L5_I036
|
G
|
|
ypt951
|
C
|
|
ypt953
|
C
|
|
ypt954
|
C
|
|
ypt955
|
G
|
|
ypt956x
|
C
|
|
ypt959
|
C
|
|
ypt960
|
G
|
|
ypt961
|
C
|
|
ypt962
|
S
|
|
ypt963
|
G
|
|
ypt964
|
S
|
|
ypt965
|
C
|
|
ypt966
|
C
|
|
ypt971
|
S
|
|
ypt972x
|
S
|
|
ypt975_L8_I039
|
G
|
|
ypt976_L7_I040
|
G
|
|
ypt977_L2_I041
|
G
|
|
ypt978_L2_I052
|
G
|
|
ypt979_L6_I042
|
G
|
|
ypt980_L3_I043
|
G
|
|
ypt981_L2_I044
|
G
|
|
ypt982_L4_I045
|
G
|
|
ypt984
|
G
|
|
yptwj
|
G
|
|
147209
|
G
|
|
147830
|
S
|
|
GLF_denovo
|
G
|
|
Gallus_Sonneriatii_d
|
G
|
|
Ypt4000
|
G
|
|
Ypt4879
|
G
|
|
Ypt4880
|
G
|
