ChickenSD

ChickenSD / Individual SNP / ggaS0040001561830

Detail information of ggaS0040001561830

1.General Information

SNP ID: ggaS0040001561830
Organism: Gallus gallus
Individual: 14S_L2_I021

2.Allele information

Platform: SOLEXA
Method: sequence
SNP Class: SNP
Genotype: C

3.Reference Map information

Chrom Position Reference 14S_L2_I021
chr19 646 T C

4.Gene information

Var ID Gene ID Transcript ID Gene Symbol Variant Effect Biotype cDNA Position Allele Change Protein ID Protein Position Residue Change
ggaS0040001561830 - intergenic_variant => =>

5.Individual Genotype

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Individual Genotype
101S_L1_I028 T
102S_L3_I037 Y
103S T
104S_L7_I029 C
105S_L3_I039 C
106S_L6_I030 C
107S_L2_I031 C
108S_L6_I032 C
109S_L5_I033 Y
10S_L1_I052 C
110S_L4_I034 C
111S_L3_I047 C
112S_L3_I035 C
113S_L1_I036 C
114S_L3_I037 C
116S_L6_I038 C
117S_L2_I039 Y
118S_L4_I040 C
119S_L3_I041 C
11S C
120S_L1_I041 C
121S_L3_I042 T
122S_L4_I043 C
123S_L4_I044 C
124S_L2_I048 Y
125S_L3_I050 C
126S_L3_I051 Y
128S_L1_I042 Y
129S_L3_I043 Y
12S_L4_I011 C
130S_L4_I044 Y
131S_L2_I045 C
132S_L2_I046 C
133S_L8_I046 C
134S_L2_I047 C
135S_L3_I048 C
13S_L7_I012 C
15S_L6_I022 Y
16S_L5_I023 C
17S_L3_I024 Y
18833 Y
19297 C
19912 C
19S_L4_I026 C
1S C
20736 C
20S_L7_I027 C
21S_L6_I028 C
22S_L6_I029 C
23S_L2_I030 Y
24S_L4_I031 C
25S_L3_I032 T
26S Y
27S_L4_I034 C
28S_L4_I035 T
29S_L3_I036 C
2S Y
30S_L2_I037 C
31S_L3_I038 C
32S_L1_I039 C
33S C
35S_L5_I041 C
36S_L5_I042 Y
37S_L2_I043 C
38S_L6_I044 Y
39S_L6_I053 C
3S_L4_I003 C
40S_L2_I054 C
41S_L5_I045 T
42S_L3_I055 C
43S Y
44S_L4_I001 C
45S_L2_I002 Y
46S_L4_I003 C
47S_L3_I046 C
48S_L1_I004 C
49S_L1_I005 C
4S_L4_I004 T
50S_L1_I047 Y
51S_L6_I048 C
52S_L2_I050 C
53S_L2_I006 C
54S_L2_I007 C
55S_L1_I008 C
56S_L1_I010 Y
57S_L3_I046 C
58S_L4_I051 C
59S_L5_I052 C
5S C
60S_L5_I053 Y
61S_L8_I054 Y
63S_L5_I056 C
64S_L4_I001 C
65S_L5_I002 C
66S_L2_I003 C
67S_L1_I011 C
68S_L3_I012 Y
69S C
6S C
70S C
71S_L3_I023 C
72S_L1_I024 Y
73S_L1_I025 C
74S_L4_I026 C
75S_L3_I027 C
76S_L1_I028 C
77S_L4_I029 C
78S_L4_I030 C
79S_L2_I031 C
7S_L4_I007 C
80S_L3_I004 C
81S_L1_I005 C
82S C
83S_L3_I033 C
84S_L5_I006 Y
85S_L5_I007 Y
86S_L5_I008 Y
87S_L5_I010 Y
88S_L4_I011 T
89S_L6_I012 C
90S_L4_I021 C
91S_L4_I022 T
92S_L5_I023 C
93S_L7_I024 C
95S_L8_I025 Y
96S_L4_I026 Y
97S_L8_I027 C
98S_L3_I034 C
99S_L2_I035 Y
9S C
A1 C
A10 C
A12 Y
A14 C
A3 Y
A8 C
BKL2 C
BLB2_L2_I008 C
BLO1 C
BLO11 C
BLO15 C
BLO2 C
BLO3_L4_I022 C
BOJA2 C
BYW5_L2_I010 C
GVF C
India1 T
India11 C
India13 C
India15 C
India17 C
India19 Y
India21 C
India23 C
India25 Y
India27 C
India29 C
India31 Y
India33 C
India35 C
India39 Y
India41 C
India43 C
India45 C
India47 C
India5 C
India51 Y
India55 C
India57 C
India59 Y
India61 C
India7 C
India9 C
L2 C
N1 Y
N11 C
N13 C
N18 Y
N3 T
N5 C
N7 C
N8 C
S-f1_L4_I106 C
S-f2_I107 C
S-f3_I108 C
S-f4_L4_I109 C
S-m1_I101 C
S-m2_I102 C
S-m3_I103 C
S-m4_L2_I104 C
S-m5_I105 C
S6 C
SAMN02486156 C
SAMN02486157 C
SAMN02486158 C
SAMN02486159 Y
SAMN02486160 C
SAMN02486161 C
SAMN02486162 C
SAMN02486163 C
SAMN02486164 Y
SAMN02486165 Y
SAMN02486166 C
SAMN02486167 Y
Silkia C
T2 C
T3 C
T5 C
TD1 Y
TD12 T
TD15 Y
TD22 C
TD27 Y
TD30 Y
TD6 C
TD9 Y
Tibet Y
Xcelris_104 C
Xcelris_105 Y
Xcelris_10A Y
Xcelris_10B Y
Xcelris_112 Y
Xcelris_113 Y
Xcelris_114 Y
Xcelris_11B C
Xcelris_12 Y
Xcelris_120 Y
Xcelris_127 T
Xcelris_128 Y
Xcelris_129 Y
Xcelris_12A C
Xcelris_13B T
Xcelris_14 Y
Xcelris_141 T
Xcelris_143 C
Xcelris_14A Y
Xcelris_14B C
Xcelris_174 C
Xcelris_175 C
Xcelris_176 C
Xcelris_1A C
Xcelris_1B C
Xcelris_219 Y
Xcelris_221 T
Xcelris_222 Y
Xcelris_224 Y
Xcelris_226 T
Xcelris_227 Y
Xcelris_275 T
Xcelris_278 Y
Xcelris_282 Y
Xcelris_331 C
Xcelris_332 T
Xcelris_333 Y
Xcelris_335 Y
Xcelris_336 Y
Xcelris_339 C
Xcelris_340 Y
Xcelris_341 T
Xcelris_377 Y
Xcelris_378 Y
Xcelris_379 T
Xcelris_380 C
Xcelris_381 Y
Xcelris_382 Y
Xcelris_383 C
Xcelris_384 C
Xcelris_385 Y
Xcelris_394 C
Xcelris_44 Y
Xcelris_4A C
Xcelris_4B C
Xcelris_5A C
Xcelris_5B C
Xcelris_67 Y
Xcelris_6B Y
Xcelris_7 T
Xcelris_77 Y
Xcelris_8 C
Xcelris_84 Y
Xcelris_8A C
Xcelris_8B C
Xcelris_90 T
Xcelris_97 C
Xcelris_98 Y
Xcelris_MT-134 Y
Xcelris_MT-18 C
Xcelris_MT-48 T
Xcelris_MT-85 Y
Xcelris_MT-9 C
Xcelris_MT-99 T
Y1-f1_L5_I119 C
Y1-f2_L6_I121 C
Y1-f3_L7_I101 C
Y1-m1_L6_I120 C
Y1-m2_L4_I122 C
Y1-m3_L7_I123 C
Y1-m4_I124 C
Y1-m5_L7_I102 C
YPt565 Y
YPt601 C
YPt604 C
YPt609 Y
YPt610 C
YPt637 Y
YPt641 C
YPt648 C
You1 C
You3_L7_I1000005 C
Ypt566 C
Ypt567 Y
Ypt568 C
Ypt569 C
Ypt570 C
Ypt571 C
Ypt572 C
Ypt573 C
Ypt574 C
Ypt575 Y
Ypt576 C
Ypt577 Y
Ypt578 C
Ypt579 C
Ypt580 C
Ypt581 C
Ypt582 C
Ypt583 C
Ypt584 C
Ypt585 C
Ypt586 C
Ypt587 C
Ypt588 C
Ypt589 C
Ypt590 C
Ypt591 C
Ypt592 C
Ypt593 C
Ypt594 C
Ypt595 C
Ypt596 C
Ypt597 C
Ypt598 C
Ypt599 C
Ypt600 C
Ypt602 C
Ypt603 C
Ypt606 Y
Ypt607 Y
Ypt608 Y
Ypt622 C
Ypt623 C
Ypt624 C
Ypt626 C
Ypt638 C
Ypt640 C
Ypt642 C
Ypt643 C
Ypt645 C
Ypt646 C
Ypt647 Y
Yt516 C
Yt517 Y
Yt518 C
Yt519 Y
Yt520 Y
Yt521 C
Yt522 C
Yt523 C
Yt524 C
Yt525 Y
Yt526 C
Yt527 C
Yt528 C
Yt529 C
Yt530 Y
Yt531 Y
Yt536 Y
Yt538 C
Yt539 Y
Yt540 C
ZJ1 C
ZJ2 Y
ZJ3 C
ZJ4 C
india3 C
production C
yp914ypt C
ypt169_L3_I011 C
ypt171_L2_I021 Y
ypt173_L2_I022 C
ypt175_L2_I023 C
ypt2041_L6_I002 Y
ypt2043_L1_I037 C
ypt2051_L3_I003 C
ypt2053_L6_I004 Y
ypt2063_L6_I005 T
ypt2069_L6_I006 T
ypt2071_L1_I038 Y
ypt2082 C
ypt2086 C
ypt2087 C
ypt2091 C
ypt2092 Y
ypt2093 Y
ypt2094 C
ypt2095 C
ypt2098 C
ypt2100 C
ypt2101 C
ypt2102 C
ypt2103 C
ypt2105 C
ypt2106 C
ypt2107 C
ypt2108 C
ypt2109 C
ypt2110 C
ypt2111 C
ypt2112 Y
ypt2114 C
ypt2115 Y
ypt2116 C
ypt2117 C
ypt2118 C
ypt2119 Y
ypt2120 C
ypt2121 C
ypt2122 C
ypt2126_L3_I053 C
ypt2127_L1_I036 C
ypt2128_L6_I054 C
ypt2144_L6_I055 C
ypt2145_L6_I056 C
ypt2146_L6_I001 Y
ypt2163 Y
ypt2164 Y
ypt2165 Y
ypt2166 Y
ypt2167 Y
ypt2168 C
ypt2169 C
ypt2170 C
ypt2171 C
ypt2172 C
ypt2174 Y
ypt2175 Y
ypt2176 T
ypt2177 C
ypt217_L2_I024 C
ypt2184 C
ypt2185 T
ypt2186 C
ypt2187 C
ypt2190 C
ypt2191 C
ypt219_L3_I025 Y
ypt2200 C
ypt2201 Y
ypt2205 C
ypt2209 Y
ypt220_L2_I026 C
ypt2214 C
ypt2215 C
ypt2216 Y
ypt2217 C
ypt2218 C
ypt2220 T
ypt2221 Y
ypt2222 T
ypt222_L3_I027 C
ypt2437 C
ypt2438 C
ypt2439 C
ypt2440 C
ypt2441 Y
ypt2442 C
ypt2443 C
ypt2444 C
ypt2445 C
ypt2446 C
ypt2447 C
ypt2448 C
ypt2449 Y
ypt2454 C
ypt2459 C
ypt2468 C
ypt2496 C
ypt2497 T
ypt2498 C
ypt2499 C
ypt2500 Y
ypt2503 C
ypt2504 Y
ypt2512 Y
ypt2516 Y
ypt2521 C
ypt2523 Y
ypt2534 C
ypt2541 C
ypt2543 C
ypt2544 C
ypt2545 C
ypt2546 C
ypt2552 Y
ypt2562 C
ypt2563 Y
ypt2569 Y
ypt2571 C
ypt2572 C
ypt2573 C
ypt2574 C
ypt2575 C
ypt2579 C
ypt258_L3_I028 C
ypt2598 C
ypt259_L2_I029 Y
ypt2601 C
ypt2606 T
ypt2608 Y
ypt2615 C
ypt2622 T
ypt2623 C
ypt2624 Y
ypt2625 C
ypt2627 C
ypt2628 C
ypt2629 C
ypt262_L3_I030 C
ypt2630 Y
ypt2636 C
ypt2638 Y
ypt263_L3_I031 C
ypt2640 C
ypt2641 C
ypt2643 T
ypt2644 C
ypt2646 Y
ypt264_L3_I032 C
ypt2650 Y
ypt2653 C
ypt2656 C
ypt2657 C
ypt2658 C
ypt2661 T
ypt2664 Y
ypt2665 C
ypt2669 C
ypt2670 C
ypt2671 C
ypt2672 C
ypt2673 Y
ypt2678 C
ypt2706 C
ypt2722 C
ypt2724 C
ypt2729 Y
ypt2733 Y
ypt2740 C
ypt2745 C
ypt2746 C
ypt2760 C
ypt2761 C
ypt2765 Y
ypt2766 C
ypt2775 C
ypt2780 C
ypt2781 C
ypt2782 Y
ypt2783 C
ypt2784 C
ypt2785 C
ypt2786 C
ypt2787 C
ypt2788 C
ypt2789 C
ypt2790 C
ypt2791 C
ypt2792 C
ypt2799 C
ypt2800 C
ypt2808 Y
ypt2810 Y
ypt2812 Y
ypt2813 Y
ypt2814 T
ypt2815 C
ypt2816 C
ypt2817 T
ypt2819 C
ypt2821 C
ypt2822 Y
ypt2823 Y
ypt2824 C
ypt2825 C
ypt2826 Y
ypt2827 C
ypt2828 C
ypt2831 C
ypt2832 Y
ypt2842 C
ypt2843 Y
ypt2849 C
ypt2859 C
ypt2861 C
ypt2862 C
ypt2863 C
ypt2870 C
ypt2871 C
ypt2887 C
ypt2888 C
ypt2890_L3_I040 C
ypt2891_L3_I041 C
ypt2892 T
ypt2893_L3_I025 C
ypt2894 C
ypt2895_L3_I026 C
ypt2902 C
ypt2909 Y
ypt2910 C
ypt2911 C
ypt2912 Y
ypt2918 C
ypt2929 C
ypt2930 Y
ypt3001 C
ypt3002 C
ypt3004 Y
ypt3005 C
ypt3006 C
ypt3007 C
ypt3008 C
ypt3009 C
ypt3010 Y
ypt3011 C
ypt3012 C
ypt3016 Y
ypt3017 C
ypt3028 C
ypt3038 C
ypt3040 C
ypt3041 Y
ypt3042 C
ypt3043 C
ypt3044 Y
ypt3045 T
ypt3046 C
ypt3047 C
ypt3050 C
ypt3051 C
ypt3052 C
ypt3061 C
ypt3069 C
ypt3072 C
ypt3133 C
ypt3134 C
ypt3135 C
ypt3136 C
ypt3137 C
ypt3138 C
ypt3139 C
ypt3140 C
ypt3141 Y
ypt3142 C
ypt3143 C
ypt3144_L3_I039 C
ypt3145 C
ypt3146 Y
ypt3149_L2_I034 Y
ypt3150_L8_I023 C
ypt3159_L6_I035 Y
ypt3160_L8_I024 C
ypt3162_L6_I036 C
ypt3179_L8_I025 C
ypt3180 C
ypt3181_L7_I038 Y
ypt3182_L1_I039 T
ypt3189_L1_I040 Y
ypt3190_L8_I026 C
ypt3191_L2_I041 Y
ypt3193_L1_I027 Y
ypt3195_L1_I042 C
ypt3196_L2_I043 Y
ypt3197_L1_I044 Y
ypt3205_L2_I047 C
ypt3206_L1_I048 Y
ypt3207_L6_I050 Y
ypt3210_L6_I051 Y
ypt3211_L6_I052 Y
ypt3212_L4_I028 Y
ypt3213_L8_I029 Y
ypt3219_L1_I030 C
ypt3220_L1_I031 Y
ypt3221_L1_I032 Y
ypt3222_L1_I033 T
ypt3224_L8_I043 Y
ypt3225_L2_I053 Y
ypt3226_L3_I044 C
ypt3238_L3_I046 T
ypt3239_L1_I035 Y
ypt3240_L6_I054 T
ypt3243_L8_I047 C
ypt3246_L6_I050 Y
ypt3247_L6_I051 C
ypt3257_L1_I056 C
ypt3258_L3_I001 C
ypt3259_L6_I002 C
ypt3260_L6_I003 C
ypt3261_L7_I004 C
ypt3262_L7_I005 Y
ypt3269_L7_I006 T
ypt3270_L1_I007 Y
ypt3271_L7_I008 Y
ypt3272_L7_I010 T
ypt3274A_L7_I011 Y
ypt3275_L1_I012 T
ypt3277_L6_I027 Y
ypt4001 Y
ypt53_L2_I032 C
ypt55_L1_I033 T
ypt890 Y
ypt891 Y
ypt896_L2_I047 Y
ypt897_L3_I048 C
ypt898 Y
ypt899_L6_I051 T
ypt901_L1_I052 Y
ypt902_L1_I053 Y
ypt903_L2_I054 T
ypt904_L4_I055 C
ypt905_L6_I056 Y
ypt906_L3_I001 Y
ypt907_L6_I002 C
ypt908_L1_I003 C
ypt909_L5_I004 Y
ypt911_L6_I006 C
ypt912 Y
ypt913 C
ypt915 C
ypt917 C
ypt918_L3_I007 C
ypt919_L4_I008 Y
ypt921_L8_I011 Y
ypt922_L4_I012 T
ypt923_L2_I051 Y
ypt924_L3_I021 C
ypt925_L2_I022 Y
ypt926_L2_I023 C
ypt928 C
ypt929 T
ypt930 C
ypt931 Y
ypt932 Y
ypt933 C
ypt936 T
ypt938x Y
ypt939_L5_I025 C
ypt940_L4_I026 T
ypt941_L5_I027 C
ypt942_L7_I028 C
ypt943 C
ypt944_L3_I030 C
ypt945_L4_I031 C
ypt946_L4_I032 C
ypt947_L5_I033 C
ypt948_L2_I034 C
ypt949_L3_I035 Y
ypt950_L5_I036 C
ypt951 C
ypt952 Y
ypt953 C
ypt954 Y
ypt955 C
ypt956x C
ypt957 C
ypt958 C
ypt959 C
ypt960 Y
ypt961 C
ypt962 C
ypt963 C
ypt964 C
ypt965 C
ypt966 C
ypt971 C
ypt972x Y
ypt973_L4_I037 C
ypt974 Y
ypt975_L8_I039 C
ypt976_L7_I040 C
ypt977_L2_I041 C
ypt978_L2_I052 C
ypt979_L6_I042 C
ypt980_L3_I043 C
ypt981_L2_I044 C
ypt982_L4_I045 C
ypt984 C
yptwj C
147209 C
147830 C
GLF_denovo C
Gallus_Sonneriatii_d C
Ypt4000 C
Ypt4879 C
Ypt4880 C