ChickenSD
Detail information of ggaS0036004312799
1.General Information
| SNP ID: |
ggaS0036004312799 |
| Organism: |
Gallus gallus |
| Individual: |
133S_L8_I046 |
2.Allele information
| Platform: |
SOLEXA |
| Method: |
sequence |
| SNP Class: |
SNP |
| Genotype: |
G |
3.Reference Map information
| Chrom |
Position |
Reference |
133S_L8_I046
|
| chrW
|
11650
|
A
|
G
|
4.Gene information
| Var ID |
Gene ID |
Transcript ID |
Gene Symbol |
Variant Effect |
Biotype |
cDNA Position |
Allele Change |
Protein ID |
Protein Position |
Residue Change |
| ggaS0036004312799 |
ENSGALG00000025736
|
|
- |
upstream_gene_variant |
|
|
=>
|
|
|
=>
|
5.Individual Genotype
| Individual |
Genotype |
|
101S_L1_I028
|
R
|
|
106S_L6_I030
|
R
|
|
10S_L1_I052
|
R
|
|
110S_L4_I034
|
R
|
|
113S_L1_I036
|
R
|
|
114S_L3_I037
|
R
|
|
116S_L6_I038
|
R
|
|
118S_L4_I040
|
R
|
|
119S_L3_I041
|
R
|
|
11S
|
R
|
|
120S_L1_I041
|
R
|
|
121S_L3_I042
|
R
|
|
122S_L4_I043
|
R
|
|
123S_L4_I044
|
R
|
|
124S_L2_I048
|
R
|
|
125S_L3_I050
|
A
|
|
126S_L3_I051
|
A
|
|
127S_L2_I045
|
A
|
|
128S_L1_I042
|
A
|
|
129S_L3_I043
|
R
|
|
130S_L4_I044
|
A
|
|
131S_L2_I045
|
R
|
|
132S_L2_I046
|
R
|
|
18833
|
R
|
|
19912
|
R
|
|
19S_L4_I026
|
R
|
|
1S
|
R
|
|
20S_L7_I027
|
R
|
|
25S_L3_I032
|
R
|
|
26S
|
R
|
|
27S_L4_I034
|
R
|
|
28S_L4_I035
|
R
|
|
29S_L3_I036
|
R
|
|
2S
|
A
|
|
35S_L5_I041
|
R
|
|
36S_L5_I042
|
A
|
|
37S_L2_I043
|
A
|
|
38S_L6_I044
|
R
|
|
3S_L4_I003
|
R
|
|
41S_L5_I045
|
G
|
|
42S_L3_I055
|
R
|
|
43S
|
A
|
|
47S_L3_I046
|
R
|
|
48S_L1_I004
|
R
|
|
4S_L4_I004
|
R
|
|
51S_L6_I048
|
R
|
|
52S_L2_I050
|
A
|
|
55S_L1_I008
|
A
|
|
56S_L1_I010
|
A
|
|
5S
|
A
|
|
60S_L5_I053
|
G
|
|
61S_L8_I054
|
G
|
|
62S_L8_I055
|
A
|
|
63S_L5_I056
|
R
|
|
67S_L1_I011
|
R
|
|
68S_L3_I012
|
R
|
|
69S
|
R
|
|
70S
|
R
|
|
71S_L3_I023
|
R
|
|
75S_L3_I027
|
A
|
|
76S_L1_I028
|
R
|
|
80S_L3_I004
|
G
|
|
81S_L1_I005
|
A
|
|
82S
|
R
|
|
83S_L3_I033
|
R
|
|
84S_L5_I006
|
R
|
|
85S_L5_I007
|
R
|
|
86S_L5_I008
|
A
|
|
87S_L5_I010
|
R
|
|
88S_L4_I011
|
R
|
|
89S_L6_I012
|
R
|
|
90S_L4_I021
|
A
|
|
91S_L4_I022
|
R
|
|
92S_L5_I023
|
A
|
|
93S_L7_I024
|
G
|
|
95S_L8_I025
|
R
|
|
96S_L4_I026
|
R
|
|
99S_L2_I035
|
R
|
|
9S
|
R
|
|
A10
|
A
|
|
A12
|
R
|
|
A14
|
A
|
|
A3
|
A
|
|
BLO1
|
G
|
|
BLO2
|
G
|
|
BLO3_L4_I022
|
G
|
|
BOJA2
|
G
|
|
GVF
|
G
|
|
India15
|
A
|
|
India23
|
A
|
|
India25
|
A
|
|
India31
|
R
|
|
India37
|
R
|
|
India39
|
R
|
|
India41
|
R
|
|
India45
|
R
|
|
India5
|
A
|
|
India7
|
R
|
|
L2
|
A
|
|
N1
|
R
|
|
N11
|
A
|
|
N18
|
A
|
|
N3
|
A
|
|
N5
|
A
|
|
S-f2_I107
|
A
|
|
S-f3_I108
|
R
|
|
S-f4_L4_I109
|
A
|
|
SAMN02486156
|
R
|
|
SAMN02486157
|
R
|
|
SAMN02486158
|
R
|
|
SAMN02486159
|
R
|
|
SAMN02486160
|
R
|
|
SAMN02486161
|
R
|
|
SAMN02486162
|
G
|
|
SAMN02486163
|
A
|
|
SAMN02486164
|
A
|
|
SAMN02486165
|
R
|
|
SAMN02486166
|
R
|
|
SAMN02486167
|
R
|
|
T5
|
R
|
|
TD22
|
A
|
|
TD27
|
R
|
|
TD30
|
R
|
|
TD6
|
A
|
|
Tibet
|
R
|
|
Xcelris_112
|
G
|
|
Xcelris_11B
|
R
|
|
Xcelris_127
|
A
|
|
Xcelris_137
|
G
|
|
Xcelris_143
|
R
|
|
Xcelris_14A
|
A
|
|
Xcelris_1A
|
A
|
|
Xcelris_222
|
A
|
|
Xcelris_224
|
G
|
|
Xcelris_226
|
A
|
|
Xcelris_280
|
R
|
|
Xcelris_3
|
R
|
|
Xcelris_332
|
A
|
|
Xcelris_335
|
R
|
|
Xcelris_336
|
R
|
|
Xcelris_377
|
A
|
|
Xcelris_379
|
R
|
|
Xcelris_383
|
A
|
|
Xcelris_385
|
R
|
|
Xcelris_4A
|
R
|
|
Xcelris_4B
|
G
|
|
Xcelris_8B
|
A
|
|
Xcelris_97
|
G
|
|
Xcelris_98
|
A
|
|
Xcelris_MT-85
|
R
|
|
Y1-f1_L5_I119
|
A
|
|
Y1-f2_L6_I121
|
R
|
|
Y1-f3_L7_I101
|
A
|
|
YPt601
|
R
|
|
YPt604
|
A
|
|
YPt610
|
R
|
|
YPt637
|
R
|
|
YPt641
|
R
|
|
YPt648
|
A
|
|
You3_L7_I1000005
|
R
|
|
Ypt566
|
G
|
|
Ypt567
|
G
|
|
Ypt570
|
R
|
|
Ypt571
|
A
|
|
Ypt572
|
A
|
|
Ypt574
|
A
|
|
Ypt575
|
R
|
|
Ypt577
|
R
|
|
Ypt579
|
R
|
|
Ypt580
|
R
|
|
Ypt581
|
G
|
|
Ypt582
|
R
|
|
Ypt583
|
R
|
|
Ypt585
|
G
|
|
Ypt587
|
A
|
|
Ypt589
|
R
|
|
Ypt590
|
G
|
|
Ypt591
|
R
|
|
Ypt592
|
R
|
|
Ypt594
|
R
|
|
Ypt595
|
R
|
|
Ypt598
|
R
|
|
Ypt599
|
R
|
|
Ypt602
|
A
|
|
Ypt603
|
A
|
|
Ypt606
|
A
|
|
Ypt608
|
A
|
|
Ypt623
|
R
|
|
Ypt624
|
A
|
|
Ypt626
|
R
|
|
Ypt638
|
R
|
|
Ypt640
|
R
|
|
Yt517
|
R
|
|
Yt518
|
G
|
|
Yt519
|
R
|
|
Yt520
|
R
|
|
Yt521
|
R
|
|
Yt525
|
R
|
|
Yt527
|
R
|
|
Yt529
|
R
|
|
Yt530
|
G
|
|
Yt536
|
G
|
|
Yt539
|
R
|
|
ZJ4
|
R
|
|
india3
|
R
|
|
production
|
R
|
|
ypt170_L2_I012
|
A
|
|
ypt171_L2_I021
|
A
|
|
ypt2051_L3_I003
|
A
|
|
ypt2053_L6_I004
|
A
|
|
ypt2063_L6_I005
|
R
|
|
ypt2071_L1_I038
|
A
|
|
ypt2082
|
R
|
|
ypt2086
|
A
|
|
ypt2091
|
G
|
|
ypt2095
|
R
|
|
ypt2100
|
A
|
|
ypt2102
|
R
|
|
ypt2106
|
A
|
|
ypt2107
|
R
|
|
ypt2109
|
A
|
|
ypt2110
|
R
|
|
ypt2112
|
A
|
|
ypt2114
|
R
|
|
ypt2115
|
A
|
|
ypt2116
|
R
|
|
ypt2118
|
A
|
|
ypt2119
|
G
|
|
ypt2120
|
R
|
|
ypt2121
|
A
|
|
ypt2124_L4_I052
|
G
|
|
ypt2126_L3_I053
|
A
|
|
ypt2127_L1_I036
|
R
|
|
ypt2145_L6_I056
|
R
|
|
ypt2146_L6_I001
|
A
|
|
ypt2167
|
R
|
|
ypt2168
|
A
|
|
ypt2175
|
A
|
|
ypt2177
|
A
|
|
ypt2178
|
A
|
|
ypt217_L2_I024
|
R
|
|
ypt2184
|
R
|
|
ypt2185
|
R
|
|
ypt2186
|
R
|
|
ypt2187
|
A
|
|
ypt2191
|
G
|
|
ypt2200
|
R
|
|
ypt2201
|
A
|
|
ypt2205
|
R
|
|
ypt2209
|
R
|
|
ypt2220
|
R
|
|
ypt2438
|
R
|
|
ypt2442
|
R
|
|
ypt2443
|
R
|
|
ypt2446
|
R
|
|
ypt2447
|
R
|
|
ypt2448
|
R
|
|
ypt2454
|
R
|
|
ypt2459
|
R
|
|
ypt2468
|
R
|
|
ypt2496
|
R
|
|
ypt2497
|
R
|
|
ypt2498
|
R
|
|
ypt2499
|
R
|
|
ypt2500
|
R
|
|
ypt2503
|
A
|
|
ypt2504
|
A
|
|
ypt2507
|
A
|
|
ypt2512
|
A
|
|
ypt2516
|
R
|
|
ypt2523
|
A
|
|
ypt2534
|
R
|
|
ypt2541
|
R
|
|
ypt2569
|
R
|
|
ypt2572
|
R
|
|
ypt2573
|
R
|
|
ypt2574
|
R
|
|
ypt2579
|
R
|
|
ypt2606
|
R
|
|
ypt2608
|
R
|
|
ypt2615
|
R
|
|
ypt2622
|
R
|
|
ypt2623
|
R
|
|
ypt2624
|
A
|
|
ypt262_L3_I030
|
R
|
|
ypt2630
|
A
|
|
ypt2636
|
A
|
|
ypt2638
|
R
|
|
ypt2640
|
R
|
|
ypt2643
|
G
|
|
ypt2644
|
R
|
|
ypt2646
|
A
|
|
ypt2656
|
R
|
|
ypt2657
|
R
|
|
ypt2661
|
R
|
|
ypt2665
|
R
|
|
ypt2669
|
A
|
|
ypt2672
|
A
|
|
ypt2673
|
A
|
|
ypt2724
|
A
|
|
ypt2729
|
G
|
|
ypt2733
|
G
|
|
ypt2739
|
A
|
|
ypt2740
|
R
|
|
ypt2761
|
R
|
|
ypt2765
|
R
|
|
ypt2766
|
R
|
|
ypt2780
|
R
|
|
ypt2781
|
R
|
|
ypt2785
|
A
|
|
ypt2786
|
R
|
|
ypt2791
|
G
|
|
ypt2792
|
A
|
|
ypt2799
|
R
|
|
ypt2800
|
R
|
|
ypt2808
|
R
|
|
ypt2810
|
R
|
|
ypt2812
|
A
|
|
ypt2813
|
R
|
|
ypt2814
|
R
|
|
ypt2815
|
R
|
|
ypt2816
|
A
|
|
ypt2817
|
R
|
|
ypt2819
|
A
|
|
ypt2821
|
G
|
|
ypt2822
|
R
|
|
ypt2823
|
R
|
|
ypt2826
|
R
|
|
ypt2827
|
R
|
|
ypt2831
|
A
|
|
ypt2832
|
R
|
|
ypt2842
|
A
|
|
ypt2843
|
A
|
|
ypt2862
|
G
|
|
ypt2871
|
G
|
|
ypt2887
|
G
|
|
ypt2888
|
G
|
|
ypt2891_L3_I041
|
G
|
|
ypt2895_L3_I026
|
A
|
|
ypt2911
|
A
|
|
ypt2912
|
A
|
|
ypt2930
|
R
|
|
ypt3003
|
R
|
|
ypt3004
|
R
|
|
ypt3005
|
R
|
|
ypt3007
|
R
|
|
ypt3009
|
A
|
|
ypt3028
|
R
|
|
ypt3040
|
A
|
|
ypt3041
|
R
|
|
ypt3042
|
A
|
|
ypt3044
|
A
|
|
ypt3045
|
A
|
|
ypt3046
|
A
|
|
ypt3052
|
A
|
|
ypt3061
|
R
|
|
ypt3069
|
A
|
|
ypt3138
|
R
|
|
ypt3139
|
R
|
|
ypt3140
|
R
|
|
ypt3141
|
R
|
|
ypt3142
|
R
|
|
ypt3143
|
R
|
|
ypt3144_L3_I039
|
G
|
|
ypt3145
|
A
|
|
ypt3146
|
A
|
|
ypt3149_L2_I034
|
R
|
|
ypt3150_L8_I023
|
R
|
|
ypt3159_L6_I035
|
R
|
|
ypt3180
|
R
|
|
ypt3190_L8_I026
|
A
|
|
ypt3191_L2_I041
|
R
|
|
ypt3193_L1_I027
|
R
|
|
ypt3195_L1_I042
|
A
|
|
ypt3197_L1_I044
|
R
|
|
ypt3211_L6_I052
|
G
|
|
ypt3219_L1_I030
|
R
|
|
ypt3222_L1_I033
|
A
|
|
ypt3229_L8_I045
|
G
|
|
ypt3243_L8_I047
|
R
|
|
ypt3246_L6_I050
|
A
|
|
ypt3260_L6_I003
|
A
|
|
ypt3270_L1_I007
|
A
|
|
ypt3271_L7_I008
|
G
|
|
ypt3272_L7_I010
|
A
|
|
ypt3289_L8_I021
|
R
|
|
ypt51_L2_I031
|
R
|
|
ypt55_L1_I033
|
A
|
|
ypt891
|
R
|
|
ypt896_L2_I047
|
R
|
|
ypt901_L1_I052
|
A
|
|
ypt903_L2_I054
|
R
|
|
ypt907_L6_I002
|
A
|
|
ypt909_L5_I004
|
R
|
|
ypt913
|
R
|
|
ypt915
|
G
|
|
ypt928
|
A
|
|
ypt930
|
G
|
|
ypt931
|
A
|
|
ypt938x
|
R
|
|
ypt941_L5_I027
|
A
|
|
ypt942_L7_I028
|
R
|
|
ypt943
|
A
|
|
ypt950_L5_I036
|
R
|
|
ypt951
|
A
|
|
ypt953
|
R
|
|
ypt954
|
R
|
|
ypt955
|
R
|
|
ypt956x
|
A
|
|
ypt958
|
R
|
|
ypt959
|
G
|
|
ypt960
|
G
|
|
ypt963
|
R
|
|
ypt964
|
A
|
|
ypt965
|
A
|
|
ypt971
|
A
|
|
ypt972x
|
R
|
|
ypt974
|
R
|
|
ypt976_L7_I040
|
R
|
|
ypt977_L2_I041
|
R
|
|
ypt978_L2_I052
|
G
|
|
ypt979_L6_I042
|
R
|
|
ypt980_L3_I043
|
R
|
|
ypt982_L4_I045
|
G
|
|
yptwj
|
A
|
|
147830
|
R
|
|
GLF_denovo
|
G
|
|
Gallus_Sonneriatii_d
|
R
|
|
Ypt4000
|
R
|
|
Ypt4880
|
R
|
