ChickenSD

ChickenSD / Individual SNP / ggaS0025002475498

Detail information of ggaS0025002475498

1.General Information

SNP ID: ggaS0025002475498
Organism: Gallus gallus
Individual: 123S_L4_I044

2.Allele information

Platform: SOLEXA
Method: sequence
SNP Class: SNP
Genotype: C

3.Reference Map information

Chrom Position Reference 123S_L4_I044
chr26 21776 T C

4.Gene information

Var ID Gene ID Transcript ID Gene Symbol Variant Effect Biotype cDNA Position Allele Change Protein ID Protein Position Residue Change
ggaS0025002475498 ENSGALG00000019751 MICAL1 synonymous_variant => =>

5.Individual Genotype

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Individual Genotype
100S C
101S_L1_I028 Y
102S_L3_I037 C
104S_L7_I029 Y
105S_L3_I039 C
106S_L6_I030 C
107S_L2_I031 C
108S_L6_I032 C
109S_L5_I033 C
10S_L1_I052 T
110S_L4_I034 Y
111S_L3_I047 Y
112S_L3_I035 C
113S_L1_I036 C
114S_L3_I037 C
116S_L6_I038 Y
117S_L2_I039 C
118S_L4_I040 T
119S_L3_I041 T
11S T
120S_L1_I041 Y
121S_L3_I042 Y
122S_L4_I043 C
124S_L2_I048 C
125S_L3_I050 C
126S_L3_I051 Y
127S_L2_I045 T
128S_L1_I042 T
129S_L3_I043 Y
130S_L4_I044 T
131S_L2_I045 Y
132S_L2_I046 Y
133S_L8_I046 T
134S_L2_I047 T
135S_L3_I048 C
13S_L7_I012 Y
14S_L2_I021 T
15S_L6_I022 T
16S_L5_I023 T
17S_L3_I024 T
18833 C
18S_L7_I025 T
19297 C
19912 C
19S_L4_I026 T
1S T
20736 C
20S_L7_I027 T
21S_L6_I028 Y
22S_L6_I029 T
23S_L2_I030 T
25S_L3_I032 T
26S T
27S_L4_I034 T
28S_L4_I035 T
29S_L3_I036 T
30S_L2_I037 C
31S_L3_I038 Y
32S_L1_I039 C
33S C
35S_L5_I041 C
36S_L5_I042 C
37S_L2_I043 Y
38S_L6_I044 T
39S_L6_I053 T
3S_L4_I003 T
40S_L2_I054 T
41S_L5_I045 T
42S_L3_I055 T
43S T
44S_L4_I001 C
45S_L2_I002 C
46S_L4_I003 C
47S_L3_I046 T
48S_L1_I004 Y
49S_L1_I005 C
50S_L1_I047 Y
51S_L6_I048 Y
52S_L2_I050 Y
53S_L2_I006 Y
54S_L2_I007 T
55S_L1_I008 Y
56S_L1_I010 C
57S_L3_I046 C
58S_L4_I051 C
59S_L5_I052 T
5S Y
60S_L5_I053 Y
61S_L8_I054 Y
62S_L8_I055 C
63S_L5_I056 Y
64S_L4_I001 C
65S_L5_I002 C
66S_L2_I003 Y
67S_L1_I011 C
68S_L3_I012 C
69S Y
6S C
70S C
71S_L3_I023 Y
72S_L1_I024 C
73S_L1_I025 C
74S_L4_I026 Y
75S_L3_I027 T
76S_L1_I028 Y
77S_L4_I029 T
78S_L4_I030 T
79S_L2_I031 T
7S_L4_I007 Y
80S_L3_I004 T
81S_L1_I005 Y
82S Y
83S_L3_I033 Y
84S_L5_I006 C
85S_L5_I007 Y
86S_L5_I008 C
87S_L5_I010 C
88S_L4_I011 Y
89S_L6_I012 Y
90S_L4_I021 C
93S_L7_I024 C
95S_L8_I025 Y
96S_L4_I026 Y
97S_L8_I027 Y
98S_L3_I034 C
99S_L2_I035 C
9S T
A1 Y
A10 C
A12 T
A14 C
A3 C
A8 Y
BKL2 C
BLB1_L2_I007 C
BLB2_L2_I008 C
BLO1 C
BLO11 C
BLO15 C
BLO2 C
BLO3_L4_I022 C
BOJA2 C
BYW3_L3_I033 C
BYW5_L2_I010 C
GVF C
India1 Y
India11 Y
India13 T
India15 T
India17 T
India19 Y
India21 Y
India23 Y
India25 C
India27 Y
India29 T
India31 Y
India33 T
India35 Y
India37 T
India39 C
India41 T
India43 T
India45 T
India47 T
India5 T
India51 Y
India55 T
India57 T
India59 Y
India61 C
India7 T
India9 Y
L2 Y
N1 C
N11 Y
N13 C
N18 C
N3 C
N5 Y
N7 T
N8 C
S-f1_L4_I106 C
S-f2_I107 C
S-f3_I108 C
S-f4_L4_I109 C
S-m1_I101 C
S-m2_I102 C
S-m3_I103 C
S-m4_L2_I104 C
S-m5_I105 C
S6 C
SAMN02486156 C
SAMN02486157 C
SAMN02486158 C
SAMN02486159 C
SAMN02486160 C
SAMN02486161 C
SAMN02486162 C
SAMN02486163 C
SAMN02486164 C
SAMN02486165 C
SAMN02486166 C
SAMN02486167 C
Silkia C
T2 C
T3 Y
T5 C
TD1 C
TD12 C
TD15 C
TD22 C
TD27 C
TD30 C
TD6 C
TD9 C
Tibet C
Xcelris_104 C
Xcelris_10A C
Xcelris_10B C
Xcelris_113 C
Xcelris_11B C
Xcelris_12 C
Xcelris_120 C
Xcelris_127 C
Xcelris_128 C
Xcelris_129 C
Xcelris_137 C
Xcelris_14 C
Xcelris_143 C
Xcelris_14A T
Xcelris_14B T
Xcelris_174 T
Xcelris_176 Y
Xcelris_1B C
Xcelris_219 C
Xcelris_221 C
Xcelris_222 C
Xcelris_224 C
Xcelris_226 C
Xcelris_227 C
Xcelris_275 C
Xcelris_278 C
Xcelris_280 C
Xcelris_282 C
Xcelris_2A C
Xcelris_2B T
Xcelris_331 C
Xcelris_332 C
Xcelris_333 C
Xcelris_335 C
Xcelris_336 C
Xcelris_339 C
Xcelris_340 C
Xcelris_341 C
Xcelris_377 C
Xcelris_379 C
Xcelris_380 C
Xcelris_381 C
Xcelris_382 C
Xcelris_383 C
Xcelris_384 C
Xcelris_385 C
Xcelris_4A Y
Xcelris_4B T
Xcelris_5A T
Xcelris_5B T
Xcelris_67 C
Xcelris_6A T
Xcelris_6B Y
Xcelris_77 C
Xcelris_84 C
Xcelris_8A C
Xcelris_8B C
Xcelris_90 C
Xcelris_97 C
Xcelris_98 C
Xcelris_MT-85 C
Xcelris_MT-9 C
Y1-f1_L5_I119 C
Y1-f2_L6_I121 C
Y1-f3_L7_I101 C
Y1-m1_L6_I120 C
Y1-m2_L4_I122 C
Y1-m3_L7_I123 C
Y1-m4_I124 C
Y1-m5_L7_I102 C
YPt565 C
YPt601 C
YPt604 Y
YPt609 C
YPt610 C
YPt637 C
YPt641 T
YPt648 C
You1 C
You3_L7_I1000005 C
Ypt566 C
Ypt567 C
Ypt568 C
Ypt569 C
Ypt570 C
Ypt571 C
Ypt572 C
Ypt573 C
Ypt574 C
Ypt575 C
Ypt576 C
Ypt577 C
Ypt578 C
Ypt579 C
Ypt580 C
Ypt581 C
Ypt582 C
Ypt583 C
Ypt584 C
Ypt585 C
Ypt586 C
Ypt587 C
Ypt588 C
Ypt589 C
Ypt590 C
Ypt591 C
Ypt595 C
Ypt596 C
Ypt597 C
Ypt598 C
Ypt599 C
Ypt600 C
Ypt602 C
Ypt603 T
Ypt606 C
Ypt607 C
Ypt608 C
Ypt622 C
Ypt623 C
Ypt624 C
Ypt626 C
Ypt638 C
Ypt640 C
Ypt642 Y
Ypt643 C
Ypt645 Y
Ypt646 Y
Ypt647 C
Yt516 C
Yt517 T
Yt518 T
Yt519 Y
Yt520 Y
Yt521 Y
Yt522 Y
Yt523 Y
Yt524 T
Yt525 Y
Yt526 C
Yt527 C
Yt528 T
Yt529 C
Yt530 C
Yt531 T
Yt536 Y
Yt538 Y
Yt539 C
Yt540 C
ZJ1 T
ZJ2 T
ZJ3 C
ZJ4 Y
india3 Y
india49 T
production C
yp914ypt C
ypt169_L3_I011 T
ypt170_L2_I012 Y
ypt171_L2_I021 Y
ypt173_L2_I022 Y
ypt175_L2_I023 Y
ypt2041_L6_I002 C
ypt2043_L1_I037 C
ypt2051_L3_I003 C
ypt2053_L6_I004 Y
ypt2069_L6_I006 Y
ypt2071_L1_I038 Y
ypt2082 T
ypt2086 T
ypt2087 Y
ypt2091 T
ypt2092 C
ypt2093 C
ypt2094 T
ypt2095 T
ypt2098 Y
ypt2100 T
ypt2101 Y
ypt2102 Y
ypt2103 T
ypt2105 C
ypt2106 C
ypt2107 C
ypt2108 C
ypt2109 C
ypt2110 C
ypt2111 T
ypt2112 C
ypt2114 T
ypt2115 Y
ypt2116 C
ypt2117 T
ypt2118 C
ypt2119 C
ypt2120 C
ypt2121 T
ypt2122 C
ypt2124_L4_I052 T
ypt2126_L3_I053 C
ypt2127_L1_I036 T
ypt2128_L6_I054 C
ypt2144_L6_I055 C
ypt2145_L6_I056 C
ypt2146_L6_I001 C
ypt2163 C
ypt2164 Y
ypt2165 Y
ypt2166 C
ypt2167 C
ypt2168 C
ypt2169 C
ypt2170 C
ypt2172 Y
ypt2173 T
ypt2174 Y
ypt2175 Y
ypt2177 C
ypt2178 T
ypt217_L2_I024 Y
ypt2184 C
ypt2185 Y
ypt2186 Y
ypt2187 C
ypt2189 C
ypt2190 T
ypt2191 C
ypt219_L3_I025 Y
ypt2200 C
ypt2205 Y
ypt2209 T
ypt220_L2_I026 C
ypt2214 C
ypt2215 T
ypt2216 Y
ypt2217 C
ypt2218 T
ypt2219 Y
ypt221_L3_I042 C
ypt2220 Y
ypt2221 C
ypt222_L3_I027 Y
ypt2437 C
ypt2438 C
ypt2439 C
ypt2440 C
ypt2441 C
ypt2442 T
ypt2443 Y
ypt2444 Y
ypt2445 C
ypt2446 C
ypt2447 C
ypt2448 Y
ypt2449 C
ypt2454 T
ypt2459 T
ypt2468 T
ypt2496 Y
ypt2497 Y
ypt2498 C
ypt2499 Y
ypt2500 C
ypt2503 C
ypt2504 Y
ypt2507 T
ypt2512 T
ypt2516 Y
ypt2523 T
ypt2534 Y
ypt2541 Y
ypt2543 T
ypt2544 T
ypt2545 C
ypt2546 Y
ypt2547 T
ypt2552 T
ypt2562 T
ypt2563 T
ypt2569 C
ypt2570 T
ypt2571 C
ypt2572 C
ypt2573 T
ypt2574 T
ypt2575 C
ypt2579 T
ypt258_L3_I028 Y
ypt2598 T
ypt259_L2_I029 T
ypt2606 T
ypt2608 T
ypt2615 T
ypt2622 T
ypt2623 T
ypt2625 C
ypt2627 Y
ypt2628 C
ypt2629 C
ypt262_L3_I030 C
ypt2630 C
ypt2636 Y
ypt2638 T
ypt263_L3_I031 T
ypt2640 T
ypt2641 T
ypt2643 T
ypt2644 T
ypt2646 T
ypt264_L3_I032 C
ypt2650 C
ypt2653 C
ypt2656 T
ypt2657 Y
ypt2658 C
ypt2664 Y
ypt2665 Y
ypt2669 Y
ypt2670 Y
ypt2671 T
ypt2672 Y
ypt2673 C
ypt2678 C
ypt2706 C
ypt2722 T
ypt2724 Y
ypt2729 Y
ypt2733 Y
ypt2739 C
ypt2740 Y
ypt2745 C
ypt2746 C
ypt2760 Y
ypt2761 C
ypt2765 C
ypt2766 Y
ypt2775 C
ypt2780 C
ypt2781 Y
ypt2782 C
ypt2783 C
ypt2784 Y
ypt2785 T
ypt2786 Y
ypt2787 T
ypt2788 T
ypt2789 T
ypt2790 Y
ypt2791 T
ypt2792 Y
ypt2799 Y
ypt2800 Y
ypt2808 C
ypt2810 Y
ypt2812 C
ypt2813 C
ypt2814 Y
ypt2815 Y
ypt2816 C
ypt2821 C
ypt2822 Y
ypt2823 Y
ypt2824 Y
ypt2825 C
ypt2826 C
ypt2827 T
ypt2828 Y
ypt2831 C
ypt2832 T
ypt2842 C
ypt2843 C
ypt2849 Y
ypt2859 C
ypt2860 C
ypt2861 C
ypt2862 C
ypt2863 C
ypt2870 C
ypt2871 C
ypt2887 C
ypt2888 C
ypt2889 C
ypt2890_L3_I040 C
ypt2891_L3_I041 C
ypt2892 Y
ypt2893_L3_I025 Y
ypt2894 T
ypt2895_L3_I026 T
ypt2902 T
ypt2909 Y
ypt2910 Y
ypt2911 Y
ypt2912 C
ypt2918 Y
ypt2929 T
ypt2930 Y
ypt3001 T
ypt3002 Y
ypt3003 T
ypt3004 C
ypt3005 T
ypt3006 T
ypt3007 T
ypt3008 T
ypt3009 T
ypt3010 Y
ypt3011 T
ypt3012 T
ypt3016 Y
ypt3017 C
ypt3028 T
ypt3038 Y
ypt3040 Y
ypt3041 C
ypt3042 Y
ypt3043 C
ypt3044 C
ypt3045 C
ypt3046 Y
ypt3047 T
ypt3050 C
ypt3051 C
ypt3052 C
ypt3061 C
ypt3069 C
ypt3072 C
ypt3133 C
ypt3134 C
ypt3135 C
ypt3136 C
ypt3137 C
ypt3138 C
ypt3139 C
ypt3140 C
ypt3141 C
ypt3142 C
ypt3143 C
ypt3144_L3_I039 C
ypt3145 C
ypt3146 C
ypt3149_L2_I034 C
ypt3150_L8_I023 C
ypt3159_L6_I035 C
ypt3160_L8_I024 C
ypt3162_L6_I036 C
ypt3179_L8_I025 Y
ypt3180 C
ypt3181_L7_I038 C
ypt3182_L1_I039 C
ypt3189_L1_I040 C
ypt3190_L8_I026 C
ypt3191_L2_I041 C
ypt3193_L1_I027 C
ypt3195_L1_I042 C
ypt3196_L2_I043 C
ypt3197_L1_I044 C
ypt3205_L2_I047 C
ypt3207_L6_I050 C
ypt3210_L6_I051 C
ypt3212_L4_I028 C
ypt3219_L1_I030 C
ypt3220_L1_I031 C
ypt3221_L1_I032 C
ypt3222_L1_I033 C
ypt3224_L8_I043 C
ypt3225_L2_I053 C
ypt3229_L8_I045 C
ypt3239_L1_I035 C
ypt3243_L8_I047 C
ypt3246_L6_I050 T
ypt3247_L6_I051 T
ypt3257_L1_I056 T
ypt3259_L6_I002 Y
ypt3261_L7_I004 C
ypt3262_L7_I005 C
ypt3269_L7_I006 C
ypt3270_L1_I007 C
ypt3271_L7_I008 C
ypt3272_L7_I010 C
ypt3274A_L7_I011 C
ypt3275_L1_I012 C
ypt3277_L6_I027 C
ypt3289_L8_I021 C
ypt4001 C
ypt47_L2_I029 C
ypt50_L2_I030 T
ypt53_L2_I032 C
ypt55_L1_I033 C
ypt890 C
ypt891 C
ypt896_L2_I047 C
ypt897_L3_I048 C
ypt898 C
ypt899_L6_I051 C
ypt901_L1_I052 C
ypt903_L2_I054 C
ypt904_L4_I055 C
ypt905_L6_I056 C
ypt906_L3_I001 C
ypt907_L6_I002 C
ypt908_L1_I003 C
ypt909_L5_I004 C
ypt913 Y
ypt915 T
ypt917 T
ypt918_L3_I007 T
ypt919_L4_I008 C
ypt920_L5_I010 T
ypt921_L8_I011 Y
ypt923_L2_I051 C
ypt925_L2_I022 C
ypt926_L2_I023 C
ypt928 C
ypt929 C
ypt930 C
ypt931 C
ypt938x C
ypt939_L5_I025 C
ypt941_L5_I027 C
ypt942_L7_I028 C
ypt943 C
ypt944_L3_I030 C
ypt945_L4_I031 C
ypt946_L4_I032 C
ypt947_L5_I033 C
ypt948_L2_I034 C
ypt949_L3_I035 C
ypt950_L5_I036 C
ypt951 Y
ypt952 C
ypt953 C
ypt954 C
ypt955 T
ypt956x C
ypt957 C
ypt958 C
ypt959 C
ypt960 C
ypt961 C
ypt962 C
ypt963 C
ypt964 C
ypt965 C
ypt966 C
ypt971 C
ypt972x C
ypt973_L4_I037 C
ypt974 C
ypt975_L8_I039 C
ypt976_L7_I040 C
ypt977_L2_I041 C
ypt978_L2_I052 C
ypt979_L6_I042 C
ypt980_L3_I043 C
ypt981_L2_I044 C
ypt982_L4_I045 C
ypt984 C
yptwj C
147209 C
147830 C
GLF_denovo C
Gallus_Sonneriatii_d C