ChickenSD

ChickenSD / Individual SNP / ggaS0018003913286

Detail information of ggaS0018003913286

1.General Information

SNP ID: ggaS0018003913286
Organism: Gallus gallus
Individual: 117S_L2_I039

2.Allele information

Platform: SOLEXA
Method: sequence
SNP Class: SNP
Genotype: T

3.Reference Map information

Chrom Position Reference 117S_L2_I039
chr6 2781 C T

4.Gene information

Var ID Gene ID Transcript ID Gene Symbol Variant Effect Biotype cDNA Position Allele Change Protein ID Protein Position Residue Change
ggaS0018003913286 - intergenic_variant => =>

5.Individual Genotype

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Individual Genotype
100S Y
101S_L1_I028 Y
102S_L3_I037 Y
103S Y
104S_L7_I029 C
105S_L3_I039 Y
106S_L6_I030 Y
107S_L2_I031 Y
108S_L6_I032 Y
109S_L5_I033 Y
10S_L1_I052 Y
110S_L4_I034 Y
111S_L3_I047 C
112S_L3_I035 C
113S_L1_I036 C
114S_L3_I037 C
116S_L6_I038 Y
118S_L4_I040 C
119S_L3_I041 Y
11S Y
120S_L1_I041 Y
121S_L3_I042 Y
122S_L4_I043 Y
123S_L4_I044 Y
124S_L2_I048 Y
125S_L3_I050 Y
126S_L3_I051 Y
127S_L2_I045 C
128S_L1_I042 Y
129S_L3_I043 C
12S_L4_I011 C
130S_L4_I044 Y
131S_L2_I045 C
132S_L2_I046 C
133S_L8_I046 C
134S_L2_I047 Y
135S_L3_I048 C
13S_L7_I012 C
14S_L2_I021 Y
15S_L6_I022 Y
16S_L5_I023 Y
17S_L3_I024 C
18833 Y
18S_L7_I025 C
19297 C
19912 Y
19S_L4_I026 Y
1S Y
20736 C
20S_L7_I027 C
21S_L6_I028 C
22S_L6_I029 C
23S_L2_I030 Y
24S_L4_I031 C
25S_L3_I032 C
26S C
27S_L4_I034 Y
28S_L4_I035 C
29S_L3_I036 C
2S T
30S_L2_I037 Y
31S_L3_I038 C
32S_L1_I039 C
33S C
35S_L5_I041 C
36S_L5_I042 C
37S_L2_I043 Y
38S_L6_I044 Y
39S_L6_I053 Y
3S_L4_I003 Y
40S_L2_I054 Y
41S_L5_I045 C
42S_L3_I055 C
43S C
44S_L4_I001 Y
45S_L2_I002 C
46S_L4_I003 C
47S_L3_I046 Y
48S_L1_I004 C
49S_L1_I005 Y
4S_L4_I004 C
50S_L1_I047 C
51S_L6_I048 C
52S_L2_I050 Y
53S_L2_I006 C
54S_L2_I007 C
55S_L1_I008 Y
56S_L1_I010 Y
57S_L3_I046 Y
58S_L4_I051 C
59S_L5_I052 Y
5S C
60S_L5_I053 Y
61S_L8_I054 C
62S_L8_I055 C
63S_L5_I056 Y
64S_L4_I001 C
65S_L5_I002 Y
66S_L2_I003 C
67S_L1_I011 Y
68S_L3_I012 Y
69S Y
6S Y
70S Y
71S_L3_I023 Y
72S_L1_I024 Y
73S_L1_I025 Y
74S_L4_I026 Y
75S_L3_I027 C
76S_L1_I028 Y
77S_L4_I029 C
78S_L4_I030 C
79S_L2_I031 C
7S_L4_I007 C
80S_L3_I004 C
81S_L1_I005 C
82S Y
83S_L3_I033 Y
84S_L5_I006 Y
85S_L5_I007 Y
86S_L5_I008 Y
87S_L5_I010 Y
88S_L4_I011 C
89S_L6_I012 C
90S_L4_I021 C
91S_L4_I022 Y
92S_L5_I023 C
93S_L7_I024 Y
95S_L8_I025 C
96S_L4_I026 Y
97S_L8_I027 Y
98S_L3_I034 Y
99S_L2_I035 Y
9S T
A1 Y
A10 C
A12 Y
A14 C
A3 Y
A8 C
BKL2 Y
BLB1_L2_I007 C
BLB2_L2_I008 C
BLO1 C
BLO11 C
BLO15 C
BLO2 C
BLO3_L4_I022 C
BOJA2 C
BYW3_L3_I033 C
BYW5_L2_I010 C
GVF C
India1 Y
India11 C
India13 Y
India15 Y
India17 Y
India19 Y
India21 T
India23 C
India25 Y
India27 Y
India29 C
India31 Y
India33 C
India35 C
India37 C
India39 C
India41 C
India43 Y
India45 Y
India47 Y
India5 C
India51 C
India55 C
India57 Y
India59 C
India61 Y
India7 C
India9 C
L2 Y
N1 Y
N11 Y
N13 Y
N18 Y
N3 C
N5 C
N7 Y
N8 Y
S-f1_L4_I106 Y
S-f2_I107 C
S-f3_I108 Y
S-f4_L4_I109 Y
S-m1_I101 C
S-m2_I102 Y
S-m3_I103 Y
S-m4_L2_I104 Y
S-m5_I105 Y
S6 C
SAMN02486156 T
SAMN02486157 C
SAMN02486158 Y
SAMN02486159 Y
SAMN02486160 Y
SAMN02486161 Y
SAMN02486162 Y
SAMN02486163 Y
SAMN02486164 Y
SAMN02486165 Y
SAMN02486166 C
SAMN02486167 Y
Silkia Y
T2 C
T3 C
T5 C
TD1 Y
TD12 Y
TD15 Y
TD22 C
TD27 Y
TD30 C
TD6 C
TD9 Y
Tibet C
Xcelris_10 C
Xcelris_101 C
Xcelris_104 C
Xcelris_105 C
Xcelris_10A Y
Xcelris_10B Y
Xcelris_112 C
Xcelris_113 C
Xcelris_114 C
Xcelris_11B Y
Xcelris_12 C
Xcelris_120 C
Xcelris_127 C
Xcelris_128 C
Xcelris_129 C
Xcelris_13 C
Xcelris_137 C
Xcelris_13B C
Xcelris_14 C
Xcelris_142 C
Xcelris_143 C
Xcelris_144 C
Xcelris_14A Y
Xcelris_14B Y
Xcelris_174 Y
Xcelris_1A C
Xcelris_219 C
Xcelris_221 C
Xcelris_222 C
Xcelris_224 C
Xcelris_226 C
Xcelris_227 C
Xcelris_275 C
Xcelris_278 C
Xcelris_280 C
Xcelris_2A Y
Xcelris_2B C
Xcelris_3 C
Xcelris_331 C
Xcelris_332 C
Xcelris_333 C
Xcelris_335 C
Xcelris_336 C
Xcelris_339 C
Xcelris_340 C
Xcelris_341 C
Xcelris_377 C
Xcelris_378 C
Xcelris_379 C
Xcelris_381 C
Xcelris_382 C
Xcelris_383 C
Xcelris_384 C
Xcelris_385 C
Xcelris_392 C
Xcelris_44 C
Xcelris_4A C
Xcelris_4B C
Xcelris_5 C
Xcelris_5A C
Xcelris_5B C
Xcelris_67 C
Xcelris_6A C
Xcelris_7 C
Xcelris_77 C
Xcelris_8 C
Xcelris_84 Y
Xcelris_8A T
Xcelris_8B C
Xcelris_90 C
Xcelris_97 C
Xcelris_98 C
Xcelris_MT-134 C
Xcelris_MT-18 C
Xcelris_MT-46 C
Xcelris_MT-48 C
Xcelris_MT-6 C
Xcelris_MT-9 C
Xcelris_MT-99 C
Y1-f1_L5_I119 T
Y1-f2_L6_I121 T
Y1-f3_L7_I101 T
Y1-m1_L6_I120 T
Y1-m2_L4_I122 T
Y1-m3_L7_I123 T
Y1-m4_I124 Y
Y1-m5_L7_I102 Y
YPt565 Y
YPt601 T
YPt604 Y
YPt609 C
YPt610 Y
YPt637 Y
YPt641 Y
YPt648 C
You1 T
You3_L7_I1000005 Y
Ypt566 T
Ypt567 Y
Ypt568 Y
Ypt569 Y
Ypt570 C
Ypt571 Y
Ypt572 Y
Ypt573 Y
Ypt574 C
Ypt575 Y
Ypt576 C
Ypt577 Y
Ypt578 T
Ypt579 Y
Ypt580 Y
Ypt581 T
Ypt582 C
Ypt583 C
Ypt584 Y
Ypt585 Y
Ypt586 Y
Ypt587 Y
Ypt588 Y
Ypt589 T
Ypt590 T
Ypt591 T
Ypt592 T
Ypt593 Y
Ypt594 Y
Ypt595 Y
Ypt596 T
Ypt597 Y
Ypt598 Y
Ypt599 Y
Ypt600 Y
Ypt602 Y
Ypt603 Y
Ypt606 Y
Ypt607 Y
Ypt608 Y
Ypt622 Y
Ypt623 C
Ypt624 Y
Ypt626 Y
Ypt638 Y
Ypt640 Y
Ypt643 C
Ypt645 C
Yt516 Y
Yt517 C
Yt519 Y
Yt520 Y
Yt522 Y
Yt523 Y
Yt524 Y
Yt525 C
Yt526 Y
Yt527 Y
Yt528 C
Yt529 Y
Yt530 Y
Yt531 Y
Yt536 C
Yt538 C
Yt539 Y
Yt540 C
ZJ1 C
ZJ2 C
ZJ3 Y
ZJ4 C
india3 Y
india49 Y
production Y
yp914ypt T
ypt169_L3_I011 Y
ypt170_L2_I012 C
ypt171_L2_I021 C
ypt173_L2_I022 Y
ypt175_L2_I023 C
ypt2041_L6_I002 Y
ypt2043_L1_I037 Y
ypt2051_L3_I003 Y
ypt2053_L6_I004 Y
ypt2063_L6_I005 Y
ypt2069_L6_I006 C
ypt2071_L1_I038 C
ypt2082 Y
ypt2086 C
ypt2087 C
ypt2091 C
ypt2092 C
ypt2093 Y
ypt2094 Y
ypt2095 C
ypt2098 Y
ypt2100 T
ypt2101 Y
ypt2102 Y
ypt2103 C
ypt2105 Y
ypt2106 C
ypt2107 Y
ypt2108 Y
ypt2109 Y
ypt2110 C
ypt2111 Y
ypt2112 C
ypt2114 C
ypt2115 C
ypt2116 C
ypt2117 Y
ypt2118 C
ypt2119 Y
ypt2120 Y
ypt2121 Y
ypt2122 C
ypt2124_L4_I052 Y
ypt2126_L3_I053 Y
ypt2127_L1_I036 C
ypt2128_L6_I054 C
ypt2144_L6_I055 Y
ypt2145_L6_I056 C
ypt2146_L6_I001 Y
ypt2163 Y
ypt2164 C
ypt2165 Y
ypt2166 Y
ypt2167 Y
ypt2168 C
ypt2169 C
ypt2170 C
ypt2171 Y
ypt2172 Y
ypt2173 Y
ypt2174 T
ypt2175 C
ypt2176 Y
ypt2177 T
ypt2178 T
ypt217_L2_I024 Y
ypt2184 Y
ypt2185 Y
ypt2186 C
ypt2187 Y
ypt2189 Y
ypt2190 C
ypt2191 C
ypt219_L3_I025 Y
ypt2200 C
ypt2201 Y
ypt2205 Y
ypt2209 C
ypt220_L2_I026 C
ypt2214 Y
ypt2215 C
ypt2216 Y
ypt2217 Y
ypt2218 C
ypt2219 T
ypt221_L3_I042 Y
ypt2220 Y
ypt2221 Y
ypt2222 Y
ypt222_L3_I027 C
ypt2437 Y
ypt2438 Y
ypt2439 Y
ypt2440 Y
ypt2441 Y
ypt2442 Y
ypt2443 Y
ypt2444 C
ypt2445 C
ypt2446 C
ypt2447 C
ypt2448 Y
ypt2449 C
ypt2454 C
ypt2459 Y
ypt2468 Y
ypt2496 Y
ypt2497 Y
ypt2498 Y
ypt2499 Y
ypt2500 Y
ypt2503 Y
ypt2504 Y
ypt2507 C
ypt2512 Y
ypt2516 C
ypt2521 C
ypt2523 Y
ypt2534 C
ypt2541 C
ypt2543 C
ypt2544 Y
ypt2545 C
ypt2546 C
ypt2547 Y
ypt2552 Y
ypt2562 Y
ypt2563 C
ypt2569 Y
ypt2570 C
ypt2571 C
ypt2572 Y
ypt2573 Y
ypt2574 Y
ypt2575 C
ypt2579 C
ypt258_L3_I028 C
ypt2598 C
ypt259_L2_I029 Y
ypt2601 C
ypt2606 C
ypt2608 C
ypt2615 Y
ypt2622 C
ypt2623 C
ypt2624 T
ypt2625 Y
ypt2627 C
ypt2628 C
ypt2629 C
ypt262_L3_I030 C
ypt2630 C
ypt2636 Y
ypt2638 Y
ypt263_L3_I031 Y
ypt2640 Y
ypt2641 Y
ypt2643 C
ypt2644 C
ypt2646 C
ypt264_L3_I032 Y
ypt2650 C
ypt2653 C
ypt2656 Y
ypt2657 C
ypt2658 Y
ypt2661 C
ypt2664 C
ypt2665 C
ypt2669 Y
ypt2670 C
ypt2671 C
ypt2672 Y
ypt2673 Y
ypt2678 Y
ypt2706 C
ypt2722 Y
ypt2724 C
ypt2729 Y
ypt2733 C
ypt2739 C
ypt2740 Y
ypt2745 C
ypt2746 Y
ypt2760 C
ypt2761 Y
ypt2765 Y
ypt2766 Y
ypt2775 Y
ypt2780 Y
ypt2781 Y
ypt2782 Y
ypt2783 Y
ypt2784 Y
ypt2785 C
ypt2786 Y
ypt2787 C
ypt2788 C
ypt2789 C
ypt2790 C
ypt2791 C
ypt2792 C
ypt2799 Y
ypt2800 Y
ypt2808 Y
ypt2810 Y
ypt2812 Y
ypt2813 Y
ypt2814 C
ypt2815 C
ypt2816 C
ypt2817 Y
ypt2819 C
ypt2821 Y
ypt2822 C
ypt2823 Y
ypt2824 Y
ypt2825 Y
ypt2826 Y
ypt2827 T
ypt2828 Y
ypt2831 C
ypt2832 Y
ypt2842 C
ypt2843 Y
ypt2849 C
ypt2859 Y
ypt2860 C
ypt2861 C
ypt2862 C
ypt2863 C
ypt2870 C
ypt2871 C
ypt2887 C
ypt2888 C
ypt2889 C
ypt2890_L3_I040 C
ypt2891_L3_I041 C
ypt2892 Y
ypt2893_L3_I025 C
ypt2894 Y
ypt2895_L3_I026 Y
ypt2902 Y
ypt2909 Y
ypt2910 T
ypt2911 C
ypt2912 Y
ypt2918 Y
ypt2929 C
ypt2930 Y
ypt3001 C
ypt3002 C
ypt3003 C
ypt3004 C
ypt3005 C
ypt3006 Y
ypt3007 Y
ypt3008 Y
ypt3009 C
ypt3010 C
ypt3011 C
ypt3012 Y
ypt3016 C
ypt3017 Y
ypt3028 C
ypt3038 C
ypt3040 Y
ypt3041 Y
ypt3042 Y
ypt3043 Y
ypt3044 Y
ypt3045 C
ypt3046 C
ypt3047 Y
ypt3050 Y
ypt3051 Y
ypt3052 C
ypt3061 Y
ypt3069 Y
ypt3072 C
ypt3133 Y
ypt3134 Y
ypt3135 Y
ypt3136 Y
ypt3137 C
ypt3138 T
ypt3139 C
ypt3140 Y
ypt3141 Y
ypt3142 Y
ypt3143 Y
ypt3144_L3_I039 Y
ypt3145 Y
ypt3146 Y
ypt3149_L2_I034 Y
ypt3150_L8_I023 C
ypt3159_L6_I035 Y
ypt3160_L8_I024 Y
ypt3162_L6_I036 C
ypt3179_L8_I025 C
ypt3180 C
ypt3181_L7_I038 Y
ypt3182_L1_I039 Y
ypt3189_L1_I040 Y
ypt3190_L8_I026 C
ypt3191_L2_I041 Y
ypt3193_L1_I027 C
ypt3195_L1_I042 C
ypt3196_L2_I043 Y
ypt3197_L1_I044 C
ypt3198_L2_I045 C
ypt3204_L7_I046 C
ypt3205_L2_I047 C
ypt3206_L1_I048 C
ypt3207_L6_I050 Y
ypt3210_L6_I051 Y
ypt3211_L6_I052 C
ypt3212_L4_I028 C
ypt3213_L8_I029 C
ypt3219_L1_I030 Y
ypt3220_L1_I031 C
ypt3221_L1_I032 C
ypt3222_L1_I033 C
ypt3224_L8_I043 C
ypt3225_L2_I053 C
ypt3228-7_L1_I034 C
ypt3229_L8_I045 C
ypt3238_L3_I046 C
ypt3239_L1_I035 C
ypt3241_L6_I055 C
ypt3243_L8_I047 C
ypt3245 C
ypt3246_L6_I050 Y
ypt3247_L6_I051 Y
ypt3257_L1_I056 Y
ypt3260_L6_I003 C
ypt3262_L7_I005 C
ypt3269_L7_I006 C
ypt3270_L1_I007 C
ypt3271_L7_I008 C
ypt3272_L7_I010 C
ypt3274A_L7_I011 C
ypt3275_L1_I012 C
ypt3277_L6_I027 C
ypt3289_L8_I021 C
ypt47_L2_I029 Y
ypt50_L2_I030 C
ypt51_L2_I031 C
ypt53_L2_I032 C
ypt55_L1_I033 C
ypt890 C
ypt891 C
ypt896_L2_I047 C
ypt897_L3_I048 C
ypt898 C
ypt899_L6_I051 C
ypt901_L1_I052 C
ypt902_L1_I053 C
ypt903_L2_I054 C
ypt905_L6_I056 C
ypt906_L3_I001 C
ypt907_L6_I002 C
ypt908_L1_I003 C
ypt909_L5_I004 C
ypt910_L3_I005 C
ypt912 C
ypt913 C
ypt915 C
ypt916 C
ypt917 C
ypt918_L3_I007 C
ypt919_L4_I008 C
ypt920_L5_I010 C
ypt922_L4_I012 C
ypt923_L2_I051 C
ypt924_L3_I021 C
ypt925_L2_I022 Y
ypt926_L2_I023 T
ypt928 C
ypt929 C
ypt930 C
ypt931 C
ypt932 C
ypt933 C
ypt935 C
ypt936 C
ypt937 C
ypt939_L5_I025 C
ypt940_L4_I026 C
ypt941_L5_I027 T
ypt942_L7_I028 T
ypt943 T
ypt944_L3_I030 T
ypt945_L4_I031 T
ypt946_L4_I032 T
ypt947_L5_I033 Y
ypt948_L2_I034 Y
ypt949_L3_I035 Y
ypt950_L5_I036 T
ypt951 Y
ypt952 C
ypt953 Y
ypt954 Y
ypt955 Y
ypt956x C
ypt957 T
ypt958 Y
ypt959 T
ypt960 Y
ypt961 Y
ypt962 Y
ypt963 C
ypt964 Y
ypt965 Y
ypt966 Y
ypt971 C
ypt972x Y
ypt973_L4_I037 C
ypt974 Y
ypt975_L8_I039 T
ypt976_L7_I040 Y
ypt977_L2_I041 Y
ypt978_L2_I052 T
ypt979_L6_I042 C
ypt980_L3_I043 C
ypt981_L2_I044 Y
ypt982_L4_I045 Y
ypt984 Y
yptwj Y
147209 Y
147830 T
GLF_denovo T
Gallus_Sonneriatii_d T
Ypt4000 T
Ypt4879 Y
Ypt4880 Y