ChickenSD

ChickenSD / Individual SNP / ggaS0017001448575

Detail information of ggaS0017001448575

1.General Information

SNP ID: ggaS0017001448575
Organism: Gallus gallus
Individual: 116S_L6_I038

2.Allele information

Platform: SOLEXA
Method: sequence
SNP Class: SNP
Genotype: C

3.Reference Map information

Chrom Position Reference 116S_L6_I038
chr16 1685 T C

4.Gene information

Var ID Gene ID Transcript ID Gene Symbol Variant Effect Biotype cDNA Position Allele Change Protein ID Protein Position Residue Change
ggaS0017001448575 ENSGALG00000027865 CD1.2 upstream_gene_variant => =>
ggaS0017001448575 ENSGALG00000012494 CD1A1 upstream_gene_variant => =>
ggaS0017001448575 ENSGALG00000012494 CD1A1 upstream_gene_variant => =>

5.Individual Genotype

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Individual Genotype
100S Y
101S_L1_I028 T
102S_L3_I037 T
103S T
104S_L7_I029 Y
105S_L3_I039 C
106S_L6_I030 C
107S_L2_I031 C
108S_L6_I032 Y
109S_L5_I033 C
10S_L1_I052 C
110S_L4_I034 C
111S_L3_I047 Y
112S_L3_I035 C
113S_L1_I036 Y
114S_L3_I037 Y
117S_L2_I039 Y
118S_L4_I040 C
119S_L3_I041 C
11S Y
120S_L1_I041 Y
121S_L3_I042 Y
122S_L4_I043 C
123S_L4_I044 Y
124S_L2_I048 T
125S_L3_I050 Y
126S_L3_I051 Y
127S_L2_I045 Y
128S_L1_I042 T
129S_L3_I043 Y
12S_L4_I011 Y
130S_L4_I044 C
131S_L2_I045 Y
132S_L2_I046 C
133S_L8_I046 Y
134S_L2_I047 C
13S_L7_I012 T
14S_L2_I021 Y
15S_L6_I022 T
16S_L5_I023 Y
17S_L3_I024 Y
18833 T
18S_L7_I025 Y
19297 C
19912 C
19S_L4_I026 Y
1S C
20736 C
20S_L7_I027 C
21S_L6_I028 C
22S_L6_I029 C
23S_L2_I030 T
24S_L4_I031 T
25S_L3_I032 Y
26S T
28S_L4_I035 T
29S_L3_I036 T
2S C
30S_L2_I037 Y
31S_L3_I038 C
32S_L1_I039 Y
33S C
35S_L5_I041 C
36S_L5_I042 Y
37S_L2_I043 Y
38S_L6_I044 Y
39S_L6_I053 Y
3S_L4_I003 C
40S_L2_I054 C
41S_L5_I045 Y
42S_L3_I055 Y
43S T
44S_L4_I001 Y
45S_L2_I002 C
46S_L4_I003 C
47S_L3_I046 C
48S_L1_I004 C
49S_L1_I005 Y
4S_L4_I004 C
50S_L1_I047 Y
51S_L6_I048 Y
52S_L2_I050 Y
53S_L2_I006 C
54S_L2_I007 Y
55S_L1_I008 Y
56S_L1_I010 C
57S_L3_I046 Y
58S_L4_I051 C
59S_L5_I052 Y
5S C
60S_L5_I053 C
61S_L8_I054 C
63S_L5_I056 T
64S_L4_I001 T
65S_L5_I002 Y
66S_L2_I003 C
67S_L1_I011 T
68S_L3_I012 T
69S T
6S C
70S C
71S_L3_I023 C
72S_L1_I024 C
73S_L1_I025 C
74S_L4_I026 C
75S_L3_I027 Y
76S_L1_I028 C
77S_L4_I029 Y
78S_L4_I030 C
79S_L2_I031 C
7S_L4_I007 C
80S_L3_I004 C
81S_L1_I005 C
82S C
83S_L3_I033 Y
84S_L5_I006 Y
85S_L5_I007 Y
86S_L5_I008 T
87S_L5_I010 C
88S_L4_I011 C
89S_L6_I012 C
90S_L4_I021 C
91S_L4_I022 C
92S_L5_I023 C
93S_L7_I024 C
95S_L8_I025 Y
96S_L4_I026 Y
97S_L8_I027 T
98S_L3_I034 T
99S_L2_I035 T
9S C
A1 C
A10 C
A12 C
A14 C
A3 C
A8 C
BKL2 C
BLB1_L2_I007 C
BLO1 C
BLO11 C
BLO15 C
BLO2 C
BOJA2 C
BYW3_L3_I033 C
GVF C
India1 C
India11 Y
India13 C
India15 Y
India17 C
India19 C
India21 Y
India23 T
India25 Y
India27 C
India29 C
India31 T
India33 Y
India37 C
India41 Y
India43 Y
India45 C
India47 Y
India5 Y
India51 C
India55 Y
India57 C
India59 T
India61 Y
India7 Y
India9 C
L2 C
N1 C
N11 Y
N13 Y
N18 Y
N3 C
N5 Y
N7 T
S-f1_L4_I106 Y
S-f2_I107 Y
S-f3_I108 T
S-f4_L4_I109 T
S-m1_I101 C
S-m2_I102 C
S-m3_I103 T
S-m4_L2_I104 C
S-m5_I105 C
S6 Y
SAMN02486156 T
SAMN02486157 C
SAMN02486158 C
SAMN02486159 C
SAMN02486160 Y
SAMN02486161 C
SAMN02486162 Y
SAMN02486163 C
SAMN02486164 C
SAMN02486165 Y
SAMN02486166 C
SAMN02486167 T
Silkia T
T2 Y
T3 Y
T5 Y
TD1 Y
TD12 Y
TD15 C
TD22 C
TD27 C
TD30 C
TD6 T
TD9 C
Tibet T
Xcelris_101 C
Xcelris_104 C
Xcelris_105 C
Xcelris_10A C
Xcelris_10B T
Xcelris_112 C
Xcelris_113 C
Xcelris_114 C
Xcelris_12 C
Xcelris_120 Y
Xcelris_127 Y
Xcelris_128 C
Xcelris_129 C
Xcelris_12A T
Xcelris_13 C
Xcelris_137 C
Xcelris_13B C
Xcelris_14 C
Xcelris_144 C
Xcelris_14A T
Xcelris_174 C
Xcelris_175 C
Xcelris_1A Y
Xcelris_219 C
Xcelris_221 C
Xcelris_222 C
Xcelris_224 C
Xcelris_226 C
Xcelris_227 C
Xcelris_276 C
Xcelris_278 C
Xcelris_279 C
Xcelris_280 C
Xcelris_282 C
Xcelris_2B T
Xcelris_331 C
Xcelris_332 C
Xcelris_333 C
Xcelris_335 C
Xcelris_336 C
Xcelris_339 C
Xcelris_340 C
Xcelris_341 C
Xcelris_36 C
Xcelris_377 C
Xcelris_378 C
Xcelris_379 C
Xcelris_380 Y
Xcelris_381 C
Xcelris_382 C
Xcelris_383 Y
Xcelris_384 Y
Xcelris_385 C
Xcelris_392 C
Xcelris_394 C
Xcelris_44 C
Xcelris_4A Y
Xcelris_5 C
Xcelris_5A T
Xcelris_5B C
Xcelris_67 C
Xcelris_6A Y
Xcelris_7 C
Xcelris_77 Y
Xcelris_84 T
Xcelris_8B T
Xcelris_90 Y
Xcelris_98 C
Xcelris_MT-134 C
Xcelris_MT-46 C
Xcelris_MT-6 C
Xcelris_MT-85 C
Xcelris_MT-9 C
Xcelris_MT-99 C
Y1-f1_L5_I119 Y
Y1-f2_L6_I121 T
Y1-f3_L7_I101 C
Y1-m1_L6_I120 T
Y1-m2_L4_I122 T
Y1-m3_L7_I123 T
Y1-m4_I124 Y
Y1-m5_L7_I102 T
YPt565 Y
YPt601 T
YPt604 C
YPt609 Y
YPt610 Y
YPt637 C
YPt641 C
YPt648 Y
You1 C
You3_L7_I1000005 Y
Ypt566 Y
Ypt567 C
Ypt568 C
Ypt569 Y
Ypt570 C
Ypt571 T
Ypt572 Y
Ypt573 C
Ypt574 C
Ypt575 Y
Ypt576 C
Ypt577 C
Ypt578 T
Ypt579 T
Ypt580 Y
Ypt581 T
Ypt582 Y
Ypt583 Y
Ypt584 T
Ypt585 T
Ypt586 T
Ypt587 T
Ypt588 T
Ypt589 T
Ypt590 T
Ypt591 T
Ypt592 T
Ypt593 T
Ypt594 T
Ypt595 T
Ypt596 T
Ypt597 T
Ypt598 T
Ypt599 T
Ypt600 T
Ypt602 T
Ypt603 C
Ypt606 C
Ypt607 C
Ypt608 Y
Ypt622 Y
Ypt623 Y
Ypt624 C
Ypt626 C
Ypt638 Y
Ypt640 C
Ypt643 C
Ypt645 C
Ypt646 C
Ypt647 C
Yt516 C
Yt517 C
Yt518 C
Yt519 Y
Yt520 C
Yt521 Y
Yt522 C
Yt523 Y
Yt524 Y
Yt525 C
Yt526 Y
Yt527 C
Yt528 C
Yt529 T
Yt530 Y
Yt531 C
Yt536 Y
Yt538 T
Yt539 C
Yt540 Y
ZJ1 T
ZJ2 T
ZJ3 C
ZJ4 C
india3 C
india49 Y
production Y
ypt169_L3_I011 T
ypt170_L2_I012 Y
ypt171_L2_I021 Y
ypt173_L2_I022 C
ypt175_L2_I023 Y
ypt2041_L6_I002 Y
ypt2043_L1_I037 C
ypt2051_L3_I003 T
ypt2053_L6_I004 C
ypt2063_L6_I005 T
ypt2069_L6_I006 C
ypt2071_L1_I038 C
ypt2082 Y
ypt2086 Y
ypt2087 T
ypt2091 Y
ypt2092 Y
ypt2093 T
ypt2094 T
ypt2095 T
ypt2098 C
ypt2100 T
ypt2101 T
ypt2102 T
ypt2103 C
ypt2106 C
ypt2107 T
ypt2108 Y
ypt2109 C
ypt2110 C
ypt2111 T
ypt2112 C
ypt2114 Y
ypt2115 Y
ypt2116 T
ypt2117 Y
ypt2118 C
ypt2119 C
ypt2120 C
ypt2121 C
ypt2122 C
ypt2124_L4_I052 Y
ypt2126_L3_I053 C
ypt2127_L1_I036 C
ypt2144_L6_I055 C
ypt2145_L6_I056 C
ypt2146_L6_I001 T
ypt2163 C
ypt2164 C
ypt2165 Y
ypt2166 C
ypt2167 Y
ypt2168 C
ypt2169 Y
ypt2170 Y
ypt2171 T
ypt2172 C
ypt2173 T
ypt2174 Y
ypt2175 Y
ypt2176 C
ypt2177 C
ypt2178 Y
ypt217_L2_I024 T
ypt2184 C
ypt2185 Y
ypt2186 Y
ypt2187 C
ypt2189 T
ypt2190 Y
ypt2191 Y
ypt219_L3_I025 Y
ypt2200 C
ypt2201 Y
ypt2205 Y
ypt2209 C
ypt220_L2_I026 T
ypt2214 T
ypt2215 C
ypt2216 C
ypt2217 C
ypt2219 T
ypt221_L3_I042 Y
ypt2220 T
ypt2221 T
ypt2222 T
ypt222_L3_I027 Y
ypt2437 C
ypt2438 C
ypt2439 C
ypt2440 Y
ypt2441 C
ypt2442 C
ypt2443 C
ypt2444 Y
ypt2445 C
ypt2446 Y
ypt2447 Y
ypt2448 C
ypt2449 Y
ypt2454 C
ypt2459 C
ypt2468 Y
ypt2496 Y
ypt2497 Y
ypt2498 C
ypt2499 Y
ypt2500 T
ypt2503 Y
ypt2504 Y
ypt2507 Y
ypt2512 T
ypt2516 Y
ypt2521 Y
ypt2523 C
ypt2534 Y
ypt2541 C
ypt2543 Y
ypt2544 C
ypt2546 T
ypt2547 Y
ypt2552 T
ypt2562 Y
ypt2563 Y
ypt2569 T
ypt2570 Y
ypt2571 C
ypt2572 C
ypt2573 Y
ypt2574 C
ypt2575 C
ypt2579 C
ypt258_L3_I028 C
ypt2598 C
ypt259_L2_I029 T
ypt2601 T
ypt2606 Y
ypt2608 T
ypt2622 T
ypt2623 T
ypt2624 C
ypt2625 Y
ypt2627 C
ypt2628 Y
ypt2629 C
ypt262_L3_I030 C
ypt2630 Y
ypt2636 Y
ypt2638 Y
ypt263_L3_I031 Y
ypt2640 C
ypt2641 C
ypt2643 Y
ypt2644 Y
ypt2646 T
ypt264_L3_I032 Y
ypt2650 C
ypt2653 C
ypt2656 C
ypt2657 C
ypt2658 Y
ypt2661 C
ypt2664 Y
ypt2665 Y
ypt2669 Y
ypt2670 C
ypt2671 Y
ypt2672 Y
ypt2673 C
ypt2678 Y
ypt2706 C
ypt2722 Y
ypt2724 C
ypt2729 C
ypt2733 C
ypt2740 T
ypt2745 T
ypt2746 Y
ypt2760 C
ypt2761 T
ypt2765 T
ypt2766 T
ypt2775 C
ypt2780 C
ypt2781 C
ypt2782 C
ypt2783 C
ypt2784 C
ypt2785 Y
ypt2786 C
ypt2787 Y
ypt2788 C
ypt2789 C
ypt2790 C
ypt2791 C
ypt2792 C
ypt2799 C
ypt2800 Y
ypt2808 Y
ypt2810 Y
ypt2812 T
ypt2813 C
ypt2814 C
ypt2815 C
ypt2816 C
ypt2817 C
ypt2819 C
ypt2821 C
ypt2822 Y
ypt2823 Y
ypt2824 T
ypt2825 T
ypt2826 T
ypt2827 C
ypt2828 C
ypt2831 C
ypt2832 C
ypt2842 C
ypt2843 C
ypt2849 C
ypt2859 C
ypt2860 C
ypt2862 C
ypt2863 C
ypt2870 C
ypt2871 C
ypt2888 C
ypt2889 C
ypt2891_L3_I041 C
ypt2892 C
ypt2893_L3_I025 Y
ypt2894 C
ypt2895_L3_I026 Y
ypt2902 C
ypt2909 C
ypt2910 Y
ypt2911 T
ypt2912 Y
ypt2918 C
ypt2929 C
ypt2930 T
ypt3001 Y
ypt3003 C
ypt3005 Y
ypt3006 Y
ypt3007 C
ypt3008 Y
ypt3009 Y
ypt3010 C
ypt3011 Y
ypt3012 C
ypt3016 T
ypt3017 Y
ypt3028 Y
ypt3038 C
ypt3040 C
ypt3041 C
ypt3042 Y
ypt3043 Y
ypt3044 Y
ypt3045 C
ypt3046 Y
ypt3047 T
ypt3051 Y
ypt3052 Y
ypt3061 T
ypt3069 T
ypt3072 C
ypt3133 C
ypt3134 T
ypt3135 C
ypt3136 C
ypt3137 Y
ypt3138 T
ypt3139 C
ypt3140 C
ypt3141 C
ypt3142 Y
ypt3143 C
ypt3144_L3_I039 Y
ypt3145 C
ypt3146 C
ypt3149_L2_I034 Y
ypt3150_L8_I023 C
ypt3159_L6_I035 T
ypt3160_L8_I024 T
ypt3162_L6_I036 Y
ypt3179_L8_I025 Y
ypt3180 Y
ypt3181_L7_I038 Y
ypt3182_L1_I039 Y
ypt3189_L1_I040 C
ypt3190_L8_I026 C
ypt3191_L2_I041 C
ypt3193_L1_I027 C
ypt3195_L1_I042 T
ypt3196_L2_I043 C
ypt3197_L1_I044 T
ypt3204_L7_I046 C
ypt3205_L2_I047 C
ypt3206_L1_I048 C
ypt3207_L6_I050 C
ypt3210_L6_I051 T
ypt3211_L6_I052 C
ypt3212_L4_I028 C
ypt3213_L8_I029 C
ypt3220_L1_I031 C
ypt3221_L1_I032 Y
ypt3222_L1_I033 Y
ypt3224_L8_I043 C
ypt3225_L2_I053 C
ypt3226_L3_I044 T
ypt3228-7_L1_I034 C
ypt3229_L8_I045 C
ypt3238_L3_I046 C
ypt3239_L1_I035 C
ypt3245 C
ypt3246_L6_I050 T
ypt3257_L1_I056 C
ypt3258_L3_I001 C
ypt3260_L6_I003 Y
ypt3262_L7_I005 C
ypt3269_L7_I006 C
ypt3270_L1_I007 C
ypt3271_L7_I008 C
ypt3272_L7_I010 C
ypt3274A_L7_I011 C
ypt3276_L7_I021 C
ypt3277_L6_I027 C
ypt3278_L3_I028 C
ypt3289_L8_I021 C
ypt4001 C
ypt50_L2_I030 T
ypt53_L2_I032 C
ypt55_L1_I033 C
ypt890 C
ypt891 C
ypt896_L2_I047 C
ypt897_L3_I048 C
ypt898 C
ypt899_L6_I051 C
ypt900_L2_I050 C
ypt901_L1_I052 C
ypt902_L1_I053 C
ypt903_L2_I054 C
ypt904_L4_I055 Y
ypt905_L6_I056 C
ypt906_L3_I001 C
ypt907_L6_I002 Y
ypt908_L1_I003 Y
ypt909_L5_I004 C
ypt910_L3_I005 C
ypt911_L6_I006 C
ypt912 C
ypt913 Y
ypt916 C
ypt917 T
ypt918_L3_I007 C
ypt919_L4_I008 C
ypt920_L5_I010 Y
ypt922_L4_I012 C
ypt923_L2_I051 Y
ypt925_L2_I022 T
ypt928 T
ypt929 Y
ypt931 C
ypt932 C
ypt935 C
ypt937 C
ypt938x C
ypt939_L5_I025 C
ypt940_L4_I026 C
ypt941_L5_I027 Y
ypt942_L7_I028 T
ypt943 C
ypt944_L3_I030 T
ypt945_L4_I031 T
ypt946_L4_I032 T
ypt947_L5_I033 Y
ypt948_L2_I034 T
ypt949_L3_I035 Y
ypt950_L5_I036 T
ypt951 C
ypt952 Y
ypt953 Y
ypt954 C
ypt955 C
ypt956x Y
ypt957 C
ypt958 Y
ypt959 Y
ypt960 C
ypt961 C
ypt962 Y
ypt963 C
ypt964 T
ypt965 Y
ypt966 C
ypt971 C
ypt972x Y
ypt973_L4_I037 C
ypt974 C
ypt975_L8_I039 T
ypt976_L7_I040 T
ypt977_L2_I041 Y
ypt978_L2_I052 T
ypt979_L6_I042 Y
ypt980_L3_I043 Y
ypt981_L2_I044 T
ypt982_L4_I045 T
ypt984 T
yptwj T
147209 T
147830 T
GLF_denovo T
Gallus_Sonneriatii_d T
Ypt4000 T
Ypt4879 T
Ypt4880 T