ChickenSD

ChickenSD / Individual SNP / ggaS0017001448572

Detail information of ggaS0017001448572

1.General Information

SNP ID: ggaS0017001448572
Organism: Gallus gallus
Individual: 116S_L6_I038

2.Allele information

Platform: SOLEXA
Method: sequence
SNP Class: SNP
Genotype: A

3.Reference Map information

Chrom Position Reference 116S_L6_I038
chr16 1362 G A

4.Gene information

Var ID Gene ID Transcript ID Gene Symbol Variant Effect Biotype cDNA Position Allele Change Protein ID Protein Position Residue Change
ggaS0017001448572 ENSGALG00000027865 CD1.2 upstream_gene_variant => =>
ggaS0017001448572 ENSGALG00000012494 CD1A1 upstream_gene_variant => =>
ggaS0017001448572 ENSGALG00000012494 CD1A1 upstream_gene_variant => =>

5.Individual Genotype

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Individual Genotype
100S A
101S_L1_I028 A
102S_L3_I037 A
103S A
104S_L7_I029 G
105S_L3_I039 G
106S_L6_I030 R
107S_L2_I031 A
108S_L6_I032 R
109S_L5_I033 G
10S_L1_I052 A
110S_L4_I034 R
111S_L3_I047 G
112S_L3_I035 G
113S_L1_I036 R
114S_L3_I037 G
117S_L2_I039 A
118S_L4_I040 A
11S G
120S_L1_I041 G
121S_L3_I042 G
122S_L4_I043 A
123S_L4_I044 A
124S_L2_I048 G
125S_L3_I050 A
127S_L2_I045 G
128S_L1_I042 A
129S_L3_I043 A
12S_L4_I011 A
130S_L4_I044 R
131S_L2_I045 A
132S_L2_I046 R
133S_L8_I046 R
134S_L2_I047 G
135S_L3_I048 G
13S_L7_I012 A
14S_L2_I021 G
15S_L6_I022 A
16S_L5_I023 A
17S_L3_I024 R
18833 A
18S_L7_I025 R
19297 A
19912 R
19S_L4_I026 R
1S R
20736 R
20S_L7_I027 R
21S_L6_I028 R
22S_L6_I029 G
23S_L2_I030 A
25S_L3_I032 G
26S A
27S_L4_I034 R
28S_L4_I035 R
29S_L3_I036 A
2S A
30S_L2_I037 A
31S_L3_I038 G
32S_L1_I039 R
33S R
35S_L5_I041 A
36S_L5_I042 A
37S_L2_I043 A
38S_L6_I044 A
39S_L6_I053 G
3S_L4_I003 R
40S_L2_I054 R
41S_L5_I045 G
42S_L3_I055 G
43S A
44S_L4_I001 G
45S_L2_I002 R
46S_L4_I003 R
47S_L3_I046 G
48S_L1_I004 G
49S_L1_I005 G
4S_L4_I004 A
50S_L1_I047 G
51S_L6_I048 G
52S_L2_I050 G
53S_L2_I006 A
54S_L2_I007 A
55S_L1_I008 R
56S_L1_I010 A
57S_L3_I046 A
58S_L4_I051 A
59S_L5_I052 A
5S R
60S_L5_I053 G
61S_L8_I054 G
62S_L8_I055 G
64S_L4_I001 R
65S_L5_I002 A
66S_L2_I003 A
67S_L1_I011 R
68S_L3_I012 G
69S R
6S A
70S R
71S_L3_I023 R
72S_L1_I024 G
73S_L1_I025 A
74S_L4_I026 R
75S_L3_I027 G
76S_L1_I028 G
78S_L4_I030 G
79S_L2_I031 A
7S_L4_I007 A
80S_L3_I004 G
81S_L1_I005 G
82S A
83S_L3_I033 R
84S_L5_I006 G
85S_L5_I007 G
86S_L5_I008 G
87S_L5_I010 G
88S_L4_I011 G
89S_L6_I012 G
90S_L4_I021 G
92S_L5_I023 G
93S_L7_I024 G
95S_L8_I025 G
96S_L4_I026 A
97S_L8_I027 A
98S_L3_I034 A
99S_L2_I035 A
9S G
A1 G
A10 A
A12 G
A14 R
A3 A
BKL2 G
BLB1_L2_I007 A
BLO1 A
BLO11 A
BLO15 A
BLO2 A
BLO3_L4_I022 A
BOJA2 A
BYW3_L3_I033 R
GVF A
India1 A
India11 A
India13 G
India15 A
India17 G
India19 G
India21 R
India23 A
India25 R
India27 A
India29 G
India31 G
India37 G
India39 A
India41 G
India43 A
India45 A
India47 A
India5 A
India55 R
India57 A
India59 R
India7 R
India9 G
L2 G
N1 G
N18 G
N3 A
N7 A
S-f1_L4_I106 G
S-f2_I107 A
S-f3_I108 A
S-f4_L4_I109 A
S-m1_I101 G
S-m2_I102 R
S-m3_I103 A
S-m4_L2_I104 G
S-m5_I105 A
S6 R
SAMN02486156 A
SAMN02486157 R
SAMN02486158 G
SAMN02486159 G
SAMN02486160 R
SAMN02486161 A
SAMN02486162 G
SAMN02486163 G
SAMN02486164 A
SAMN02486165 R
SAMN02486166 G
SAMN02486167 A
Silkia A
T2 A
T3 A
T5 G
TD1 A
TD12 R
TD15 G
TD22 R
TD27 G
TD30 G
TD6 G
TD9 G
Tibet R
Xcelris_101 G
Xcelris_104 G
Xcelris_105 A
Xcelris_10A A
Xcelris_10B A
Xcelris_11B A
Xcelris_12 A
Xcelris_120 G
Xcelris_127 A
Xcelris_128 G
Xcelris_129 G
Xcelris_13 R
Xcelris_137 G
Xcelris_13B A
Xcelris_14 A
Xcelris_141 A
Xcelris_142 A
Xcelris_14A A
Xcelris_14B R
Xcelris_174 G
Xcelris_175 G
Xcelris_1B A
Xcelris_219 R
Xcelris_221 A
Xcelris_222 G
Xcelris_224 G
Xcelris_226 R
Xcelris_227 G
Xcelris_275 A
Xcelris_276 A
Xcelris_278 G
Xcelris_279 A
Xcelris_282 A
Xcelris_2A R
Xcelris_2B A
Xcelris_3 A
Xcelris_332 A
Xcelris_333 A
Xcelris_335 R
Xcelris_336 R
Xcelris_339 A
Xcelris_340 G
Xcelris_341 G
Xcelris_36 G
Xcelris_377 R
Xcelris_378 G
Xcelris_379 G
Xcelris_380 A
Xcelris_381 G
Xcelris_382 G
Xcelris_383 G
Xcelris_384 A
Xcelris_385 R
Xcelris_392 A
Xcelris_44 A
Xcelris_4B A
Xcelris_5 G
Xcelris_5A R
Xcelris_5B G
Xcelris_67 A
Xcelris_6A A
Xcelris_77 A
Xcelris_84 A
Xcelris_8A G
Xcelris_90 A
Xcelris_97 A
Xcelris_98 R
Xcelris_MT-38 A
Xcelris_MT-46 A
Xcelris_MT-48 A
Xcelris_MT-85 A
Xcelris_MT-9 G
Xcelris_MT-99 A
Y1-f1_L5_I119 A
Y1-f3_L7_I101 A
Y1-m1_L6_I120 A
Y1-m3_L7_I123 A
Y1-m4_I124 G
Y1-m5_L7_I102 A
YPt565 R
YPt601 A
YPt604 G
YPt609 A
YPt610 R
YPt637 G
YPt641 G
YPt648 R
You1 G
You3_L7_I1000005 A
Ypt566 G
Ypt567 A
Ypt568 A
Ypt569 R
Ypt570 R
Ypt571 A
Ypt572 A
Ypt573 A
Ypt574 A
Ypt575 R
Ypt576 G
Ypt577 G
Ypt578 A
Ypt579 R
Ypt580 A
Ypt581 A
Ypt582 G
Ypt583 A
Ypt584 A
Ypt585 R
Ypt586 A
Ypt587 A
Ypt588 A
Ypt589 A
Ypt590 A
Ypt591 A
Ypt592 A
Ypt593 A
Ypt594 A
Ypt595 A
Ypt596 A
Ypt597 A
Ypt598 A
Ypt599 A
Ypt600 A
Ypt602 A
Ypt603 G
Ypt606 R
Ypt607 G
Ypt608 A
Ypt623 A
Ypt624 A
Ypt626 R
Ypt638 R
Ypt640 R
Ypt642 R
Ypt643 A
Ypt645 G
Ypt646 G
Ypt647 R
Yt516 G
Yt517 R
Yt518 A
Yt519 G
Yt520 R
Yt521 R
Yt522 G
Yt523 G
Yt524 R
Yt525 R
Yt526 R
Yt527 A
Yt528 R
Yt529 G
Yt530 R
Yt531 G
Yt536 R
Yt538 A
Yt539 R
Yt540 R
ZJ1 A
ZJ2 A
ZJ3 A
ZJ4 G
india3 G
india49 R
production R
yp914ypt A
ypt169_L3_I011 G
ypt170_L2_I012 G
ypt171_L2_I021 R
ypt173_L2_I022 A
ypt175_L2_I023 G
ypt2041_L6_I002 A
ypt2043_L1_I037 G
ypt2051_L3_I003 A
ypt2063_L6_I005 A
ypt2069_L6_I006 G
ypt2071_L1_I038 A
ypt2082 G
ypt2086 R
ypt2087 R
ypt2091 A
ypt2092 R
ypt2093 A
ypt2094 A
ypt2095 A
ypt2098 G
ypt2100 G
ypt2101 G
ypt2102 A
ypt2103 G
ypt2105 A
ypt2106 G
ypt2107 A
ypt2108 G
ypt2109 G
ypt2110 G
ypt2111 R
ypt2112 G
ypt2114 G
ypt2116 G
ypt2117 R
ypt2118 G
ypt2119 G
ypt2120 R
ypt2121 R
ypt2122 G
ypt2127_L1_I036 G
ypt2128_L6_I054 G
ypt2144_L6_I055 G
ypt2145_L6_I056 G
ypt2146_L6_I001 A
ypt2163 R
ypt2164 R
ypt2166 G
ypt2167 R
ypt2168 R
ypt2171 G
ypt2172 A
ypt2173 A
ypt2174 G
ypt2175 A
ypt2176 G
ypt2177 G
ypt2178 G
ypt217_L2_I024 A
ypt2184 A
ypt2185 A
ypt2186 G
ypt2187 A
ypt2189 A
ypt2190 A
ypt2191 G
ypt219_L3_I025 R
ypt2200 G
ypt2209 R
ypt220_L2_I026 A
ypt2214 G
ypt2215 G
ypt2216 R
ypt2217 R
ypt2218 A
ypt2219 G
ypt221_L3_I042 A
ypt2220 A
ypt2221 A
ypt2222 A
ypt222_L3_I027 G
ypt2437 G
ypt2438 R
ypt2439 A
ypt2440 R
ypt2441 G
ypt2442 A
ypt2443 R
ypt2444 G
ypt2445 G
ypt2446 R
ypt2447 G
ypt2449 A
ypt2454 A
ypt2468 G
ypt2496 G
ypt2497 G
ypt2498 A
ypt2499 A
ypt2500 G
ypt2503 A
ypt2507 G
ypt2512 A
ypt2516 A
ypt2521 A
ypt2523 R
ypt2534 A
ypt2541 R
ypt2543 R
ypt2544 G
ypt2545 G
ypt2546 A
ypt2547 G
ypt2552 A
ypt2562 A
ypt2563 R
ypt2569 A
ypt2570 R
ypt2571 A
ypt2572 R
ypt2573 R
ypt2574 R
ypt2575 R
ypt2579 R
ypt258_L3_I028 R
ypt2598 G
ypt259_L2_I029 A
ypt2606 G
ypt2608 A
ypt2615 R
ypt2622 R
ypt2623 A
ypt2624 A
ypt2625 A
ypt2627 G
ypt2628 R
ypt2629 R
ypt262_L3_I030 A
ypt2630 A
ypt2636 A
ypt2638 A
ypt263_L3_I031 G
ypt2640 R
ypt2641 R
ypt2643 G
ypt2644 G
ypt2646 A
ypt264_L3_I032 G
ypt2650 R
ypt2653 R
ypt2656 G
ypt2657 G
ypt2658 G
ypt2661 A
ypt2664 G
ypt2665 G
ypt2669 G
ypt2670 A
ypt2671 A
ypt2672 R
ypt2673 A
ypt2678 A
ypt2706 A
ypt2722 A
ypt2724 R
ypt2729 G
ypt2733 G
ypt2739 G
ypt2745 R
ypt2746 A
ypt2760 A
ypt2761 R
ypt2765 G
ypt2766 R
ypt2775 A
ypt2780 R
ypt2781 R
ypt2782 G
ypt2783 A
ypt2784 R
ypt2785 G
ypt2786 G
ypt2788 G
ypt2789 A
ypt2790 A
ypt2791 G
ypt2792 G
ypt2799 A
ypt2800 R
ypt2808 G
ypt2810 G
ypt2812 G
ypt2813 G
ypt2814 G
ypt2815 G
ypt2816 G
ypt2819 G
ypt2821 G
ypt2822 G
ypt2823 A
ypt2824 A
ypt2825 A
ypt2826 A
ypt2827 G
ypt2828 G
ypt2831 A
ypt2832 G
ypt2842 R
ypt2843 A
ypt2859 G
ypt2860 A
ypt2862 A
ypt2863 A
ypt2870 A
ypt2871 A
ypt2887 A
ypt2888 A
ypt2889 R
ypt2891_L3_I041 A
ypt2892 A
ypt2893_L3_I025 A
ypt2894 G
ypt2895_L3_I026 A
ypt2902 G
ypt2909 G
ypt2910 R
ypt2911 A
ypt2912 R
ypt2918 A
ypt2929 G
ypt2930 G
ypt3003 G
ypt3004 A
ypt3005 G
ypt3006 A
ypt3007 A
ypt3008 A
ypt3009 A
ypt3011 R
ypt3012 A
ypt3016 R
ypt3028 R
ypt3038 G
ypt3040 G
ypt3041 G
ypt3044 G
ypt3045 A
ypt3047 A
ypt3051 G
ypt3052 A
ypt3061 A
ypt3069 A
ypt3072 G
ypt3133 R
ypt3134 A
ypt3135 G
ypt3136 A
ypt3137 R
ypt3138 A
ypt3139 R
ypt3140 G
ypt3141 G
ypt3142 R
ypt3143 A
ypt3144_L3_I039 G
ypt3145 G
ypt3146 A
ypt3149_L2_I034 R
ypt3150_L8_I023 G
ypt3159_L6_I035 A
ypt3160_L8_I024 A
ypt3162_L6_I036 A
ypt3179_L8_I025 A
ypt3180 G
ypt3181_L7_I038 A
ypt3182_L1_I039 R
ypt3189_L1_I040 G
ypt3190_L8_I026 R
ypt3191_L2_I041 G
ypt3193_L1_I027 G
ypt3195_L1_I042 G
ypt3196_L2_I043 G
ypt3197_L1_I044 R
ypt3204_L7_I046 G
ypt3205_L2_I047 G
ypt3206_L1_I048 A
ypt3207_L6_I050 A
ypt3210_L6_I051 A
ypt3219_L1_I030 A
ypt3220_L1_I031 A
ypt3221_L1_I032 G
ypt3222_L1_I033 A
ypt3224_L8_I043 G
ypt3225_L2_I053 G
ypt3228-7_L1_I034 R
ypt3229_L8_I045 G
ypt3238_L3_I046 A
ypt3239_L1_I035 A
ypt3240_L6_I054 A
ypt3241_L6_I055 A
ypt3246_L6_I050 A
ypt3247_L6_I051 R
ypt3257_L1_I056 G
ypt3258_L3_I001 G
ypt3261_L7_I004 A
ypt3262_L7_I005 R
ypt3269_L7_I006 A
ypt3270_L1_I007 G
ypt3271_L7_I008 G
ypt3272_L7_I010 R
ypt3274A_L7_I011 G
ypt3275_L1_I012 A
ypt3276_L7_I021 A
ypt3277_L6_I027 G
ypt3278_L3_I028 A
ypt4001 A
ypt47_L2_I029 R
ypt50_L2_I030 A
ypt51_L2_I031 A
ypt55_L1_I033 A
ypt890 A
ypt891 R
ypt896_L2_I047 R
ypt897_L3_I048 A
ypt898 G
ypt899_L6_I051 G
ypt900_L2_I050 G
ypt901_L1_I052 R
ypt902_L1_I053 G
ypt903_L2_I054 G
ypt904_L4_I055 A
ypt905_L6_I056 G
ypt906_L3_I001 G
ypt907_L6_I002 G
ypt908_L1_I003 A
ypt909_L5_I004 R
ypt910_L3_I005 A
ypt912 A
ypt915 A
ypt916 G
ypt917 R
ypt918_L3_I007 G
ypt919_L4_I008 A
ypt920_L5_I010 A
ypt923_L2_I051 A
ypt925_L2_I022 A
ypt926_L2_I023 G
ypt929 A
ypt930 A
ypt931 R
ypt934x A
ypt935 A
ypt936 A
ypt938x A
ypt939_L5_I025 G
ypt940_L4_I026 A
ypt941_L5_I027 A
ypt943 A
ypt944_L3_I030 A
ypt946_L4_I032 A
ypt947_L5_I033 G
ypt948_L2_I034 A
ypt949_L3_I035 R
ypt950_L5_I036 A
ypt951 G
ypt952 A
ypt953 R
ypt954 G
ypt955 G
ypt956x R
ypt957 G
ypt958 A
ypt959 G
ypt960 A
ypt961 A
ypt962 R
ypt963 R
ypt964 A
ypt965 A
ypt966 A
ypt971 A
ypt972x R
ypt973_L4_I037 G
ypt974 G
ypt975_L8_I039 A
ypt976_L7_I040 R
ypt977_L2_I041 A
ypt978_L2_I052 A
ypt979_L6_I042 G
ypt980_L3_I043 A
ypt981_L2_I044 A
ypt982_L4_I045 R
ypt984 A
yptwj A
147209 A
147830 A
GLF_denovo A
Gallus_Sonneriatii_d A
Ypt4000 A
Ypt4879 A
Ypt4880 A