ChickenSD

ChickenSD / Individual SNP / ggaS0017001448566

Detail information of ggaS0017001448566

1.General Information

SNP ID: ggaS0017001448566
Organism: Gallus gallus
Individual: 116S_L6_I038

2.Allele information

Platform: SOLEXA
Method: sequence
SNP Class: SNP
Genotype: G

3.Reference Map information

Chrom Position Reference 116S_L6_I038
chr16 1106 T G

4.Gene information

Var ID Gene ID Transcript ID Gene Symbol Variant Effect Biotype cDNA Position Allele Change Protein ID Protein Position Residue Change
ggaS0017001448566 ENSGALG00000027865 CD1.2 upstream_gene_variant => =>
ggaS0017001448566 ENSGALG00000012494 CD1A1 upstream_gene_variant => =>
ggaS0017001448566 ENSGALG00000012494 CD1A1 upstream_gene_variant => =>

5.Individual Genotype

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Individual Genotype
100S T
101S_L1_I028 T
102S_L3_I037 T
103S T
104S_L7_I029 K
105S_L3_I039 G
106S_L6_I030 K
107S_L2_I031 T
108S_L6_I032 T
109S_L5_I033 K
10S_L1_I052 K
110S_L4_I034 T
111S_L3_I047 K
112S_L3_I035 G
113S_L1_I036 T
114S_L3_I037 K
117S_L2_I039 T
118S_L4_I040 G
119S_L3_I041 T
11S T
120S_L1_I041 K
121S_L3_I042 T
122S_L4_I043 K
123S_L4_I044 T
124S_L2_I048 T
125S_L3_I050 T
126S_L3_I051 T
127S_L2_I045 T
128S_L1_I042 G
129S_L3_I043 K
12S_L4_I011 K
130S_L4_I044 K
131S_L2_I045 G
132S_L2_I046 G
133S_L8_I046 T
134S_L2_I047 G
135S_L3_I048 G
13S_L7_I012 T
14S_L2_I021 T
15S_L6_I022 T
16S_L5_I023 T
17S_L3_I024 T
18833 K
18S_L7_I025 K
19297 T
19912 G
19S_L4_I026 T
1S T
20736 T
20S_L7_I027 T
21S_L6_I028 T
22S_L6_I029 T
23S_L2_I030 T
24S_L4_I031 T
25S_L3_I032 T
26S G
27S_L4_I034 K
28S_L4_I035 K
29S_L3_I036 T
2S T
30S_L2_I037 T
31S_L3_I038 G
32S_L1_I039 T
33S K
35S_L5_I041 T
36S_L5_I042 T
37S_L2_I043 T
38S_L6_I044 K
39S_L6_I053 K
3S_L4_I003 T
40S_L2_I054 K
42S_L3_I055 T
43S K
44S_L4_I001 K
45S_L2_I002 T
46S_L4_I003 K
47S_L3_I046 G
48S_L1_I004 K
49S_L1_I005 T
4S_L4_I004 T
50S_L1_I047 T
51S_L6_I048 T
52S_L2_I050 G
53S_L2_I006 T
54S_L2_I007 T
55S_L1_I008 K
56S_L1_I010 T
57S_L3_I046 K
58S_L4_I051 T
59S_L5_I052 T
5S T
60S_L5_I053 K
61S_L8_I054 G
62S_L8_I055 G
63S_L5_I056 T
64S_L4_I001 T
65S_L5_I002 T
66S_L2_I003 K
67S_L1_I011 T
68S_L3_I012 T
69S T
6S T
70S K
71S_L3_I023 G
72S_L1_I024 G
73S_L1_I025 K
74S_L4_I026 T
75S_L3_I027 K
76S_L1_I028 G
77S_L4_I029 K
78S_L4_I030 G
79S_L2_I031 T
7S_L4_I007 T
80S_L3_I004 G
82S T
83S_L3_I033 T
84S_L5_I006 K
85S_L5_I007 K
86S_L5_I008 T
87S_L5_I010 G
88S_L4_I011 K
89S_L6_I012 G
90S_L4_I021 G
92S_L5_I023 G
93S_L7_I024 T
95S_L8_I025 T
97S_L8_I027 T
98S_L3_I034 T
99S_L2_I035 T
9S K
A1 K
A12 T
A14 T
A3 T
A8 T
BKL2 G
BLB1_L2_I007 T
BLO1 T
BLO2 T
BLO3_L4_I022 T
BOJA2 T
BYW3_L3_I033 K
BYW5_L2_I010 T
GVF T
India1 T
India11 K
India13 K
India15 K
India17 K
India19 T
India21 K
India23 T
India25 K
India27 G
India31 T
India33 T
India35 T
India37 K
India39 G
India41 T
India43 T
India45 K
India47 K
India5 G
India51 K
India55 T
India57 T
India59 K
India61 K
India7 T
India9 T
L2 T
N1 T
N11 K
N13 K
N18 T
N3 G
N7 K
N8 K
S-f1_L4_I106 T
S-f2_I107 T
S-f3_I108 T
S-f4_L4_I109 T
S-m1_I101 T
S-m2_I102 T
S-m3_I103 T
S-m4_L2_I104 T
S-m5_I105 T
S6 T
SAMN02486156 T
SAMN02486157 T
SAMN02486158 T
SAMN02486159 T
SAMN02486160 T
SAMN02486161 T
SAMN02486162 T
SAMN02486163 T
SAMN02486164 T
SAMN02486165 K
SAMN02486166 K
SAMN02486167 T
Silkia T
T2 T
T3 T
T5 T
TD12 K
TD15 K
TD22 T
TD27 T
TD30 K
TD6 T
TD9 T
Tibet T
Xcelris_10 T
Xcelris_101 T
Xcelris_104 T
Xcelris_105 T
Xcelris_10A T
Xcelris_10B T
Xcelris_112 T
Xcelris_113 G
Xcelris_114 G
Xcelris_11B T
Xcelris_12 G
Xcelris_120 T
Xcelris_127 K
Xcelris_128 T
Xcelris_129 G
Xcelris_12A T
Xcelris_13 K
Xcelris_137 T
Xcelris_13B T
Xcelris_14 G
Xcelris_141 G
Xcelris_142 G
Xcelris_144 K
Xcelris_14A K
Xcelris_14B K
Xcelris_174 T
Xcelris_176 T
Xcelris_1A K
Xcelris_1B T
Xcelris_219 K
Xcelris_221 K
Xcelris_222 T
Xcelris_224 T
Xcelris_226 K
Xcelris_227 T
Xcelris_279 G
Xcelris_280 K
Xcelris_2A T
Xcelris_3 T
Xcelris_331 G
Xcelris_332 G
Xcelris_333 K
Xcelris_335 G
Xcelris_336 T
Xcelris_339 G
Xcelris_340 K
Xcelris_341 T
Xcelris_377 G
Xcelris_378 T
Xcelris_379 K
Xcelris_380 K
Xcelris_381 G
Xcelris_382 K
Xcelris_383 K
Xcelris_384 K
Xcelris_385 K
Xcelris_392 T
Xcelris_394 T
Xcelris_44 K
Xcelris_4B T
Xcelris_5A T
Xcelris_5B T
Xcelris_6A T
Xcelris_6B G
Xcelris_7 G
Xcelris_77 G
Xcelris_84 T
Xcelris_8A G
Xcelris_90 K
Xcelris_97 T
Xcelris_98 K
Xcelris_MT-134 T
Xcelris_MT-18 G
Xcelris_MT-38 G
Xcelris_MT-85 G
Xcelris_MT-99 K
Y1-f1_L5_I119 T
Y1-f2_L6_I121 T
Y1-f3_L7_I101 T
Y1-m1_L6_I120 T
Y1-m2_L4_I122 T
Y1-m3_L7_I123 T
Y1-m4_I124 T
Y1-m5_L7_I102 T
YPt565 T
YPt601 T
YPt604 T
YPt609 K
YPt610 T
YPt637 G
YPt641 T
YPt648 T
You1 T
You3_L7_I1000005 T
Ypt566 T
Ypt567 K
Ypt568 G
Ypt569 K
Ypt570 K
Ypt571 T
Ypt572 K
Ypt573 G
Ypt574 K
Ypt575 T
Ypt576 K
Ypt577 T
Ypt578 T
Ypt579 T
Ypt580 T
Ypt581 T
Ypt582 T
Ypt583 T
Ypt584 T
Ypt585 T
Ypt586 T
Ypt587 T
Ypt588 T
Ypt589 T
Ypt590 T
Ypt591 T
Ypt592 T
Ypt593 T
Ypt594 T
Ypt595 T
Ypt596 T
Ypt597 T
Ypt598 T
Ypt599 T
Ypt600 T
Ypt602 K
Ypt603 K
Ypt606 T
Ypt607 K
Ypt608 K
Ypt622 T
Ypt623 T
Ypt624 T
Ypt626 T
Ypt638 T
Ypt640 T
Ypt642 K
Ypt643 K
Ypt645 G
Ypt646 K
Ypt647 K
Yt516 G
Yt517 T
Yt518 K
Yt519 T
Yt520 G
Yt521 T
Yt522 K
Yt523 T
Yt524 K
Yt525 T
Yt526 T
Yt527 T
Yt528 K
Yt529 T
Yt530 T
Yt531 K
Yt536 K
Yt538 K
Yt539 T
Yt540 T
ZJ1 T
ZJ2 T
ZJ3 T
ZJ4 G
india3 T
production K
yp914ypt T
ypt169_L3_I011 T
ypt171_L2_I021 K
ypt173_L2_I022 T
ypt2041_L6_I002 G
ypt2043_L1_I037 T
ypt2051_L3_I003 T
ypt2053_L6_I004 K
ypt2063_L6_I005 T
ypt2071_L1_I038 G
ypt2082 T
ypt2086 T
ypt2087 T
ypt2091 T
ypt2092 K
ypt2093 T
ypt2094 T
ypt2095 T
ypt2098 T
ypt2100 T
ypt2101 T
ypt2102 T
ypt2103 K
ypt2105 T
ypt2106 G
ypt2107 K
ypt2109 G
ypt2110 K
ypt2111 T
ypt2112 K
ypt2114 G
ypt2115 T
ypt2116 T
ypt2117 T
ypt2118 K
ypt2119 G
ypt2120 G
ypt2122 T
ypt2124_L4_I052 T
ypt2126_L3_I053 G
ypt2127_L1_I036 K
ypt2128_L6_I054 K
ypt2144_L6_I055 T
ypt2145_L6_I056 K
ypt2146_L6_I001 T
ypt2163 G
ypt2164 K
ypt2165 G
ypt2166 G
ypt2167 G
ypt2168 G
ypt2169 G
ypt2170 K
ypt2171 T
ypt2172 G
ypt2173 T
ypt2174 T
ypt2175 K
ypt2176 K
ypt2177 K
ypt2178 T
ypt217_L2_I024 T
ypt2184 K
ypt2185 T
ypt2186 K
ypt2187 K
ypt2190 T
ypt219_L3_I025 T
ypt2200 K
ypt2201 T
ypt2205 T
ypt2209 K
ypt220_L2_I026 K
ypt2214 T
ypt2215 G
ypt2216 K
ypt2217 K
ypt2218 G
ypt2219 T
ypt221_L3_I042 T
ypt2220 T
ypt2221 T
ypt2222 T
ypt222_L3_I027 K
ypt2437 G
ypt2438 K
ypt2439 T
ypt2440 T
ypt2441 K
ypt2442 K
ypt2443 T
ypt2444 K
ypt2445 G
ypt2446 T
ypt2447 K
ypt2448 T
ypt2449 T
ypt2454 G
ypt2459 T
ypt2468 T
ypt2496 K
ypt2497 T
ypt2498 K
ypt2499 T
ypt2500 T
ypt2503 T
ypt2504 T
ypt2507 T
ypt2512 G
ypt2516 K
ypt2521 K
ypt2523 K
ypt2534 G
ypt2541 G
ypt2543 T
ypt2544 G
ypt2545 G
ypt2546 T
ypt2547 T
ypt2552 T
ypt2562 T
ypt2563 T
ypt2569 K
ypt2570 K
ypt2571 T
ypt2572 G
ypt2573 T
ypt2574 T
ypt2575 T
ypt2579 T
ypt258_L3_I028 T
ypt2598 T
ypt259_L2_I029 T
ypt2601 T
ypt2606 T
ypt2608 G
ypt2615 K
ypt2622 K
ypt2623 T
ypt2624 T
ypt2625 T
ypt2627 G
ypt2628 T
ypt2629 K
ypt262_L3_I030 T
ypt2630 T
ypt2636 T
ypt2638 K
ypt263_L3_I031 K
ypt2640 T
ypt2641 K
ypt2644 T
ypt2646 K
ypt264_L3_I032 K
ypt2650 T
ypt2653 K
ypt2656 G
ypt2657 K
ypt2658 T
ypt2661 T
ypt2664 T
ypt2665 T
ypt2669 G
ypt2670 T
ypt2671 T
ypt2672 K
ypt2673 T
ypt2678 K
ypt2706 T
ypt2722 T
ypt2724 T
ypt2729 K
ypt2733 G
ypt2739 G
ypt2740 T
ypt2745 T
ypt2746 T
ypt2760 K
ypt2761 T
ypt2765 T
ypt2766 T
ypt2775 T
ypt2780 K
ypt2781 G
ypt2782 G
ypt2783 K
ypt2784 T
ypt2785 K
ypt2786 G
ypt2787 K
ypt2788 G
ypt2789 T
ypt2790 T
ypt2791 G
ypt2799 T
ypt2800 T
ypt2808 K
ypt2810 K
ypt2812 T
ypt2813 G
ypt2814 K
ypt2815 G
ypt2816 G
ypt2819 G
ypt2821 T
ypt2822 T
ypt2824 T
ypt2825 T
ypt2826 T
ypt2827 K
ypt2828 K
ypt2832 T
ypt2842 T
ypt2843 T
ypt2849 T
ypt2859 G
ypt2860 T
ypt2862 T
ypt2871 T
ypt2887 T
ypt2888 T
ypt2889 K
ypt2890_L3_I040 T
ypt2891_L3_I041 T
ypt2892 T
ypt2893_L3_I025 K
ypt2894 K
ypt2895_L3_I026 K
ypt2902 K
ypt2909 T
ypt2910 K
ypt2911 T
ypt2912 K
ypt2918 G
ypt2930 T
ypt3001 T
ypt3002 T
ypt3003 K
ypt3004 G
ypt3005 T
ypt3006 T
ypt3007 K
ypt3008 K
ypt3009 G
ypt3010 K
ypt3011 T
ypt3012 T
ypt3016 K
ypt3017 K
ypt3028 T
ypt3038 T
ypt3040 T
ypt3041 T
ypt3042 K
ypt3043 K
ypt3044 T
ypt3045 G
ypt3047 K
ypt3050 K
ypt3051 T
ypt3052 T
ypt3061 T
ypt3069 T
ypt3072 T
ypt3133 T
ypt3134 T
ypt3135 T
ypt3136 T
ypt3137 T
ypt3138 T
ypt3139 T
ypt3140 T
ypt3141 T
ypt3142 T
ypt3143 T
ypt3144_L3_I039 T
ypt3145 T
ypt3146 T
ypt3149_L2_I034 K
ypt3150_L8_I023 K
ypt3159_L6_I035 T
ypt3160_L8_I024 T
ypt3162_L6_I036 T
ypt3179_L8_I025 T
ypt3180 T
ypt3182_L1_I039 K
ypt3189_L1_I040 K
ypt3190_L8_I026 T
ypt3191_L2_I041 T
ypt3193_L1_I027 K
ypt3195_L1_I042 T
ypt3196_L2_I043 T
ypt3197_L1_I044 T
ypt3198_L2_I045 T
ypt3204_L7_I046 T
ypt3205_L2_I047 T
ypt3206_L1_I048 T
ypt3207_L6_I050 T
ypt3210_L6_I051 T
ypt3211_L6_I052 T
ypt3212_L4_I028 G
ypt3213_L8_I029 G
ypt3219_L1_I030 T
ypt3220_L1_I031 G
ypt3221_L1_I032 T
ypt3222_L1_I033 K
ypt3224_L8_I043 T
ypt3225_L2_I053 G
ypt3226_L3_I044 T
ypt3228-7_L1_I034 K
ypt3229_L8_I045 T
ypt3238_L3_I046 T
ypt3239_L1_I035 G
ypt3240_L6_I054 G
ypt3241_L6_I055 G
ypt3245 K
ypt3246_L6_I050 K
ypt3247_L6_I051 K
ypt3257_L1_I056 T
ypt3259_L6_I002 T
ypt3260_L6_I003 K
ypt3261_L7_I004 T
ypt3262_L7_I005 K
ypt3269_L7_I006 K
ypt3270_L1_I007 T
ypt3271_L7_I008 T
ypt3272_L7_I010 K
ypt3274A_L7_I011 T
ypt3278_L3_I028 G
ypt3289_L8_I021 K
ypt47_L2_I029 T
ypt51_L2_I031 T
ypt53_L2_I032 G
ypt55_L1_I033 G
ypt890 K
ypt891 G
ypt896_L2_I047 T
ypt897_L3_I048 G
ypt898 K
ypt899_L6_I051 T
ypt901_L1_I052 G
ypt902_L1_I053 T
ypt903_L2_I054 K
ypt904_L4_I055 K
ypt905_L6_I056 G
ypt906_L3_I001 K
ypt907_L6_I002 K
ypt908_L1_I003 K
ypt909_L5_I004 K
ypt910_L3_I005 T
ypt911_L6_I006 T
ypt912 K
ypt915 T
ypt917 T
ypt918_L3_I007 T
ypt920_L5_I010 T
ypt921_L8_I011 G
ypt922_L4_I012 G
ypt923_L2_I051 G
ypt925_L2_I022 T
ypt926_L2_I023 G
ypt929 K
ypt930 T
ypt931 K
ypt932 T
ypt933 G
ypt934x G
ypt938x G
ypt940_L4_I026 K
ypt941_L5_I027 T
ypt942_L7_I028 T
ypt943 T
ypt944_L3_I030 T
ypt945_L4_I031 T
ypt946_L4_I032 T
ypt947_L5_I033 T
ypt948_L2_I034 T
ypt949_L3_I035 T
ypt950_L5_I036 T
ypt951 T
ypt952 K
ypt953 T
ypt954 G
ypt955 T
ypt956x T
ypt957 T
ypt958 T
ypt959 T
ypt960 K
ypt961 G
ypt962 K
ypt963 K
ypt964 T
ypt965 K
ypt966 G
ypt971 K
ypt972x T
ypt973_L4_I037 K
ypt974 T
ypt975_L8_I039 T
ypt976_L7_I040 T
ypt977_L2_I041 T
ypt978_L2_I052 T
ypt979_L6_I042 T
ypt980_L3_I043 T
ypt981_L2_I044 T
ypt982_L4_I045 T
ypt984 T
yptwj T
147209 T
147830 T
GLF_denovo T
Gallus_Sonneriatii_d T
Ypt4000 T
Ypt4879 T
Ypt4880 T