ChickenSD
Detail information of ggaS0016002329821
1.General Information
SNP ID: |
ggaS0016002329821 |
Organism: |
Gallus gallus |
Individual: |
114S_L3_I037 |
2.Allele information
Platform: |
SOLEXA |
Method: |
sequence |
SNP Class: |
SNP |
Genotype: |
C |
3.Reference Map information
Chrom |
Position |
Reference |
114S_L3_I037
|
chr21
|
39378
|
A
|
C
|
4.Gene information
Var ID |
Gene ID |
Transcript ID |
Gene Symbol |
Variant Effect |
Biotype |
cDNA Position |
Allele Change |
Protein ID |
Protein Position |
Residue Change |
ggaS0016002329821 |
-
|
|
|
intergenic_variant |
|
|
=>
|
|
|
=>
|
5.Individual Genotype
Individual |
Genotype |
101S_L1_I028
|
C
|
102S_L3_I037
|
A
|
105S_L3_I039
|
A
|
107S_L2_I031
|
A
|
108S_L6_I032
|
A
|
110S_L4_I034
|
A
|
117S_L2_I039
|
A
|
119S_L3_I041
|
A
|
11S
|
A
|
120S_L1_I041
|
A
|
122S_L4_I043
|
A
|
123S_L4_I044
|
A
|
130S_L4_I044
|
A
|
134S_L2_I047
|
A
|
135S_L3_I048
|
A
|
13S_L7_I012
|
A
|
18833
|
A
|
18S_L7_I025
|
A
|
19297
|
A
|
19912
|
A
|
19S_L4_I026
|
A
|
20736
|
A
|
20S_L7_I027
|
A
|
22S_L6_I029
|
A
|
23S_L2_I030
|
A
|
24S_L4_I031
|
A
|
25S_L3_I032
|
A
|
27S_L4_I034
|
A
|
28S_L4_I035
|
A
|
2S
|
A
|
31S_L3_I038
|
A
|
35S_L5_I041
|
A
|
39S_L6_I053
|
A
|
40S_L2_I054
|
M
|
43S
|
A
|
44S_L4_I001
|
A
|
45S_L2_I002
|
A
|
46S_L4_I003
|
A
|
47S_L3_I046
|
A
|
48S_L1_I004
|
A
|
50S_L1_I047
|
A
|
51S_L6_I048
|
A
|
53S_L2_I006
|
A
|
54S_L2_I007
|
A
|
56S_L1_I010
|
A
|
59S_L5_I052
|
A
|
61S_L8_I054
|
A
|
66S_L2_I003
|
C
|
67S_L1_I011
|
A
|
6S
|
A
|
70S
|
A
|
71S_L3_I023
|
A
|
77S_L4_I029
|
A
|
7S_L4_I007
|
A
|
80S_L3_I004
|
A
|
81S_L1_I005
|
C
|
82S
|
A
|
90S_L4_I021
|
A
|
93S_L7_I024
|
A
|
97S_L8_I027
|
A
|
98S_L3_I034
|
A
|
A1
|
A
|
A14
|
A
|
A8
|
M
|
BLO1
|
A
|
BLO11
|
A
|
BLO15
|
A
|
BLO2
|
A
|
BLO3_L4_I022
|
A
|
BOJA2
|
A
|
BYW5_L2_I010
|
A
|
GVF
|
A
|
India11
|
A
|
India15
|
A
|
India17
|
A
|
India19
|
A
|
India23
|
A
|
India29
|
A
|
India33
|
A
|
India39
|
A
|
India47
|
A
|
India55
|
M
|
India57
|
A
|
India59
|
A
|
India61
|
A
|
India7
|
A
|
L2
|
A
|
N1
|
A
|
N13
|
A
|
N18
|
A
|
N3
|
A
|
N5
|
A
|
N8
|
A
|
S-f1_L4_I106
|
A
|
S-f4_L4_I109
|
A
|
S-m4_L2_I104
|
A
|
S-m5_I105
|
A
|
S6
|
M
|
SAMN02486156
|
A
|
SAMN02486157
|
A
|
SAMN02486158
|
A
|
SAMN02486159
|
A
|
SAMN02486160
|
A
|
SAMN02486161
|
A
|
SAMN02486163
|
A
|
SAMN02486164
|
A
|
SAMN02486165
|
A
|
SAMN02486166
|
A
|
SAMN02486167
|
A
|
Silkia
|
A
|
T3
|
A
|
T5
|
A
|
TD12
|
A
|
TD15
|
A
|
TD27
|
A
|
TD6
|
A
|
TD9
|
A
|
Tibet
|
A
|
Xcelris_104
|
A
|
Xcelris_112
|
C
|
Xcelris_276
|
A
|
Xcelris_278
|
A
|
Xcelris_280
|
A
|
Xcelris_332
|
A
|
Xcelris_333
|
C
|
Xcelris_380
|
A
|
Xcelris_385
|
A
|
Xcelris_394
|
A
|
Xcelris_8
|
C
|
Xcelris_8B
|
C
|
Xcelris_98
|
C
|
Xcelris_MT-18
|
A
|
Y1-f1_L5_I119
|
A
|
Y1-f3_L7_I101
|
A
|
Y1-m1_L6_I120
|
A
|
Y1-m5_L7_I102
|
A
|
YPt565
|
A
|
YPt601
|
A
|
YPt604
|
A
|
YPt609
|
A
|
YPt610
|
A
|
YPt637
|
A
|
YPt641
|
A
|
YPt648
|
A
|
You1
|
A
|
Ypt566
|
A
|
Ypt567
|
A
|
Ypt568
|
A
|
Ypt570
|
A
|
Ypt571
|
A
|
Ypt572
|
A
|
Ypt573
|
A
|
Ypt574
|
A
|
Ypt576
|
A
|
Ypt577
|
A
|
Ypt578
|
A
|
Ypt579
|
A
|
Ypt580
|
A
|
Ypt581
|
A
|
Ypt582
|
A
|
Ypt583
|
A
|
Ypt584
|
A
|
Ypt585
|
A
|
Ypt587
|
A
|
Ypt588
|
A
|
Ypt589
|
A
|
Ypt590
|
A
|
Ypt591
|
A
|
Ypt592
|
A
|
Ypt593
|
A
|
Ypt594
|
M
|
Ypt595
|
C
|
Ypt596
|
A
|
Ypt597
|
A
|
Ypt598
|
A
|
Ypt599
|
A
|
Ypt600
|
A
|
Ypt602
|
A
|
Ypt603
|
A
|
Ypt606
|
A
|
Ypt607
|
A
|
Ypt608
|
A
|
Ypt622
|
A
|
Ypt626
|
A
|
Ypt638
|
A
|
Ypt640
|
A
|
Ypt645
|
A
|
Ypt647
|
A
|
Yt516
|
A
|
Yt517
|
A
|
Yt518
|
A
|
Yt519
|
A
|
Yt520
|
A
|
Yt521
|
A
|
Yt522
|
A
|
Yt523
|
A
|
Yt524
|
A
|
Yt525
|
A
|
Yt526
|
A
|
Yt527
|
A
|
Yt528
|
A
|
Yt529
|
A
|
Yt530
|
A
|
Yt531
|
A
|
Yt536
|
A
|
Yt538
|
A
|
Yt539
|
A
|
Yt540
|
A
|
ZJ1
|
A
|
india3
|
A
|
production
|
A
|
ypt171_L2_I021
|
A
|
ypt2063_L6_I005
|
A
|
ypt2092
|
A
|
ypt2098
|
A
|
ypt2103
|
A
|
ypt2119
|
A
|
ypt2121
|
A
|
ypt2164
|
A
|
ypt2165
|
A
|
ypt2168
|
A
|
ypt2178
|
A
|
ypt2184
|
A
|
ypt2186
|
A
|
ypt2189
|
A
|
ypt2190
|
A
|
ypt219_L3_I025
|
A
|
ypt2217
|
A
|
ypt2220
|
C
|
ypt2221
|
A
|
ypt2437
|
A
|
ypt2439
|
A
|
ypt2440
|
A
|
ypt2443
|
A
|
ypt2449
|
A
|
ypt2459
|
A
|
ypt2468
|
A
|
ypt2496
|
A
|
ypt2498
|
A
|
ypt2499
|
A
|
ypt2523
|
A
|
ypt2544
|
A
|
ypt2545
|
A
|
ypt2546
|
A
|
ypt2569
|
A
|
ypt2570
|
A
|
ypt2571
|
A
|
ypt2572
|
A
|
ypt2573
|
A
|
ypt2575
|
A
|
ypt2579
|
A
|
ypt2598
|
A
|
ypt259_L2_I029
|
A
|
ypt2601
|
A
|
ypt2606
|
A
|
ypt2615
|
A
|
ypt2622
|
A
|
ypt2624
|
A
|
ypt2627
|
A
|
ypt262_L3_I030
|
A
|
ypt263_L3_I031
|
A
|
ypt2641
|
M
|
ypt2646
|
A
|
ypt264_L3_I032
|
A
|
ypt2650
|
A
|
ypt2653
|
A
|
ypt2656
|
A
|
ypt2657
|
A
|
ypt2664
|
A
|
ypt2665
|
A
|
ypt2670
|
A
|
ypt2671
|
A
|
ypt2673
|
A
|
ypt2722
|
A
|
ypt2733
|
A
|
ypt2760
|
C
|
ypt2761
|
A
|
ypt2775
|
A
|
ypt2780
|
A
|
ypt2781
|
A
|
ypt2787
|
A
|
ypt2790
|
A
|
ypt2791
|
A
|
ypt2792
|
C
|
ypt2799
|
A
|
ypt2816
|
A
|
ypt2821
|
A
|
ypt2824
|
A
|
ypt2825
|
A
|
ypt2828
|
A
|
ypt2842
|
A
|
ypt2849
|
M
|
ypt2862
|
A
|
ypt2863
|
A
|
ypt2870
|
A
|
ypt2871
|
A
|
ypt2887
|
A
|
ypt2888
|
A
|
ypt2890_L3_I040
|
A
|
ypt2891_L3_I041
|
A
|
ypt2893_L3_I025
|
A
|
ypt2895_L3_I026
|
A
|
ypt2902
|
A
|
ypt2909
|
A
|
ypt2911
|
A
|
ypt2929
|
A
|
ypt3001
|
A
|
ypt3004
|
A
|
ypt3008
|
A
|
ypt3011
|
M
|
ypt3012
|
A
|
ypt3016
|
A
|
ypt3017
|
A
|
ypt3028
|
A
|
ypt3040
|
A
|
ypt3041
|
A
|
ypt3043
|
A
|
ypt3044
|
A
|
ypt3045
|
A
|
ypt3046
|
A
|
ypt3050
|
A
|
ypt3051
|
A
|
ypt3069
|
A
|
ypt3135
|
A
|
ypt3136
|
A
|
ypt3137
|
M
|
ypt3138
|
A
|
ypt3139
|
A
|
ypt3140
|
A
|
ypt3141
|
A
|
ypt3142
|
A
|
ypt3143
|
A
|
ypt3145
|
A
|
ypt3146
|
A
|
ypt3149_L2_I034
|
A
|
ypt3150_L8_I023
|
A
|
ypt3159_L6_I035
|
A
|
ypt3160_L8_I024
|
A
|
ypt3179_L8_I025
|
A
|
ypt3180
|
A
|
ypt3182_L1_I039
|
A
|
ypt3189_L1_I040
|
A
|
ypt3191_L2_I041
|
A
|
ypt3195_L1_I042
|
A
|
ypt3196_L2_I043
|
A
|
ypt3197_L1_I044
|
A
|
ypt3205_L2_I047
|
A
|
ypt3211_L6_I052
|
C
|
ypt3276_L7_I021
|
A
|
ypt3277_L6_I027
|
A
|
ypt3289_L8_I021
|
A
|
ypt55_L1_I033
|
A
|
ypt890
|
C
|
ypt904_L4_I055
|
A
|
ypt909_L5_I004
|
A
|
ypt911_L6_I006
|
A
|
ypt924_L3_I021
|
C
|
ypt928
|
C
|
ypt931
|
C
|
ypt933
|
A
|
ypt941_L5_I027
|
A
|
ypt943
|
A
|
ypt944_L3_I030
|
A
|
ypt948_L2_I034
|
A
|
ypt949_L3_I035
|
A
|
ypt950_L5_I036
|
A
|
ypt951
|
A
|
ypt952
|
A
|
ypt953
|
A
|
ypt954
|
A
|
ypt955
|
A
|
ypt956x
|
A
|
ypt957
|
A
|
ypt959
|
A
|
ypt960
|
A
|
ypt961
|
A
|
ypt963
|
A
|
ypt964
|
A
|
ypt965
|
A
|
ypt966
|
A
|
ypt971
|
A
|
ypt973_L4_I037
|
A
|
ypt974
|
A
|
ypt975_L8_I039
|
A
|
ypt976_L7_I040
|
A
|
ypt977_L2_I041
|
A
|
ypt978_L2_I052
|
A
|
ypt979_L6_I042
|
A
|
ypt980_L3_I043
|
A
|
ypt981_L2_I044
|
A
|
ypt982_L4_I045
|
A
|
yptwj
|
A
|
147209
|
A
|
147830
|
A
|
GLF_denovo
|
A
|
Gallus_Sonneriatii_d
|
A
|
Ypt4000
|
A
|
Ypt4879
|
A
|
Ypt4880
|
M
|