ChickenSD
Detail information of ggaS0016001199406
1.General Information
| SNP ID: |
ggaS0016001199406 |
| Organism: |
Gallus gallus |
| Individual: |
114S_L3_I037 |
2.Allele information
| Platform: |
SOLEXA |
| Method: |
sequence |
| SNP Class: |
SNP |
| Genotype: |
G |
3.Reference Map information
| Chrom |
Position |
Reference |
114S_L3_I037
|
| chr13
|
1
|
C
|
G
|
4.Gene information
| Var ID |
Gene ID |
Transcript ID |
Gene Symbol |
Variant Effect |
Biotype |
cDNA Position |
Allele Change |
Protein ID |
Protein Position |
Residue Change |
| ggaS0016001199406 |
-
|
|
|
intergenic_variant |
|
|
=>
|
|
|
=>
|
5.Individual Genotype
| Individual |
Genotype |
|
107S_L2_I031
|
C
|
|
124S_L2_I048
|
G
|
|
14S_L2_I021
|
C
|
|
18833
|
C
|
|
20736
|
C
|
|
28S_L4_I035
|
C
|
|
43S
|
C
|
|
44S_L4_I001
|
G
|
|
51S_L6_I048
|
C
|
|
53S_L2_I006
|
C
|
|
54S_L2_I007
|
C
|
|
55S_L1_I008
|
C
|
|
77S_L4_I029
|
C
|
|
79S_L2_I031
|
C
|
|
87S_L5_I010
|
C
|
|
89S_L6_I012
|
C
|
|
92S_L5_I023
|
C
|
|
96S_L4_I026
|
C
|
|
A3
|
C
|
|
BLB1_L2_I007
|
C
|
|
India19
|
C
|
|
L2
|
C
|
|
S-f3_I108
|
C
|
|
SAMN02486156
|
C
|
|
SAMN02486161
|
C
|
|
SAMN02486166
|
C
|
|
SAMN02486167
|
C
|
|
TD1
|
C
|
|
TD22
|
C
|
|
TD6
|
C
|
|
Xcelris_112
|
C
|
|
Xcelris_113
|
C
|
|
Xcelris_128
|
C
|
|
Xcelris_1A
|
C
|
|
Xcelris_222
|
G
|
|
Y1-m3_L7_I123
|
C
|
|
Y1-m4_I124
|
C
|
|
YPt601
|
C
|
|
Ypt572
|
C
|
|
Ypt583
|
C
|
|
Ypt585
|
C
|
|
Ypt588
|
C
|
|
Ypt591
|
C
|
|
Ypt594
|
C
|
|
Ypt596
|
C
|
|
Ypt599
|
C
|
|
Ypt600
|
C
|
|
Ypt623
|
C
|
|
Ypt640
|
C
|
|
Ypt645
|
C
|
|
Yt517
|
C
|
|
Yt518
|
C
|
|
Yt519
|
G
|
|
Yt520
|
C
|
|
Yt526
|
C
|
|
Yt527
|
C
|
|
Yt528
|
C
|
|
Yt539
|
C
|
|
Yt540
|
C
|
|
ypt173_L2_I022
|
C
|
|
ypt2082
|
C
|
|
ypt2103
|
C
|
|
ypt2112
|
C
|
|
ypt2114
|
C
|
|
ypt2116
|
C
|
|
ypt2165
|
C
|
|
ypt2166
|
C
|
|
ypt2186
|
C
|
|
ypt2189
|
C
|
|
ypt220_L2_I026
|
C
|
|
ypt2439
|
C
|
|
ypt2500
|
G
|
|
ypt2547
|
C
|
|
ypt2569
|
C
|
|
ypt2575
|
C
|
|
ypt2622
|
C
|
|
ypt2646
|
C
|
|
ypt264_L3_I032
|
G
|
|
ypt2665
|
C
|
|
ypt2670
|
C
|
|
ypt2671
|
C
|
|
ypt2672
|
C
|
|
ypt2787
|
C
|
|
ypt2789
|
C
|
|
ypt2813
|
C
|
|
ypt2815
|
C
|
|
ypt2819
|
C
|
|
ypt2823
|
C
|
|
ypt2843
|
C
|
|
ypt2860
|
C
|
|
ypt2909
|
C
|
|
ypt3040
|
C
|
|
ypt3061
|
C
|
|
ypt3138
|
C
|
|
ypt3143
|
C
|
|
ypt3150_L8_I023
|
C
|
|
ypt3159_L6_I035
|
C
|
|
ypt3181_L7_I038
|
C
|
|
ypt3190_L8_I026
|
C
|
|
ypt3195_L1_I042
|
C
|
|
ypt3211_L6_I052
|
C
|
|
ypt3212_L4_I028
|
C
|
|
ypt3224_L8_I043
|
C
|
|
ypt3260_L6_I003
|
C
|
|
ypt3270_L1_I007
|
G
|
|
ypt946_L4_I032
|
C
|
|
ypt947_L5_I033
|
C
|
|
ypt950_L5_I036
|
C
|
|
ypt965
|
C
|
|
ypt980_L3_I043
|
C
|
|
ypt982_L4_I045
|
C
|
|
147209
|
C
|
|
Gallus_Sonneriatii_d
|
C
|
|
Ypt4880
|
C
|
