ChickenSD
Detail information of ggaS0013004646652
1.General Information
| SNP ID: |
ggaS0013004646652 |
| Organism: |
Gallus gallus |
| Individual: |
111S_L3_I047 |
2.Allele information
| Platform: |
SOLEXA |
| Method: |
sequence |
| SNP Class: |
SNP |
| Genotype: |
A |
3.Reference Map information
| Chrom |
Position |
Reference |
111S_L3_I047
|
| chrW
|
25188
|
G
|
A
|
5.Individual Genotype
| Individual |
Genotype |
|
101S_L1_I028
|
R
|
|
102S_L3_I037
|
A
|
|
109S_L5_I033
|
A
|
|
10S_L1_I052
|
G
|
|
110S_L4_I034
|
G
|
|
112S_L3_I035
|
A
|
|
113S_L1_I036
|
G
|
|
114S_L3_I037
|
R
|
|
116S_L6_I038
|
R
|
|
118S_L4_I040
|
R
|
|
11S
|
R
|
|
120S_L1_I041
|
R
|
|
121S_L3_I042
|
R
|
|
122S_L4_I043
|
G
|
|
123S_L4_I044
|
A
|
|
124S_L2_I048
|
R
|
|
125S_L3_I050
|
G
|
|
126S_L3_I051
|
G
|
|
127S_L2_I045
|
G
|
|
128S_L1_I042
|
G
|
|
129S_L3_I043
|
G
|
|
130S_L4_I044
|
G
|
|
131S_L2_I045
|
G
|
|
132S_L2_I046
|
G
|
|
133S_L8_I046
|
G
|
|
134S_L2_I047
|
A
|
|
13S_L7_I012
|
A
|
|
14S_L2_I021
|
A
|
|
15S_L6_I022
|
A
|
|
16S_L5_I023
|
A
|
|
18833
|
G
|
|
19912
|
G
|
|
19S_L4_I026
|
G
|
|
1S
|
R
|
|
20S_L7_I027
|
G
|
|
21S_L6_I028
|
A
|
|
25S_L3_I032
|
A
|
|
26S
|
G
|
|
27S_L4_I034
|
G
|
|
28S_L4_I035
|
A
|
|
29S_L3_I036
|
G
|
|
2S
|
G
|
|
33S
|
A
|
|
35S_L5_I041
|
A
|
|
36S_L5_I042
|
R
|
|
37S_L2_I043
|
G
|
|
41S_L5_I045
|
G
|
|
42S_L3_I055
|
G
|
|
43S
|
G
|
|
44S_L4_I001
|
A
|
|
45S_L2_I002
|
A
|
|
46S_L4_I003
|
A
|
|
47S_L3_I046
|
R
|
|
48S_L1_I004
|
G
|
|
49S_L1_I005
|
A
|
|
4S_L4_I004
|
R
|
|
50S_L1_I047
|
A
|
|
51S_L6_I048
|
R
|
|
52S_L2_I050
|
G
|
|
53S_L2_I006
|
A
|
|
54S_L2_I007
|
A
|
|
55S_L1_I008
|
R
|
|
56S_L1_I010
|
G
|
|
57S_L3_I046
|
A
|
|
58S_L4_I051
|
A
|
|
5S
|
R
|
|
60S_L5_I053
|
A
|
|
61S_L8_I054
|
R
|
|
62S_L8_I055
|
G
|
|
66S_L2_I003
|
A
|
|
67S_L1_I011
|
G
|
|
68S_L3_I012
|
G
|
|
69S
|
G
|
|
70S
|
A
|
|
71S_L3_I023
|
G
|
|
72S_L1_I024
|
A
|
|
74S_L4_I026
|
A
|
|
75S_L3_I027
|
G
|
|
76S_L1_I028
|
G
|
|
78S_L4_I030
|
A
|
|
79S_L2_I031
|
A
|
|
7S_L4_I007
|
A
|
|
80S_L3_I004
|
R
|
|
81S_L1_I005
|
G
|
|
82S
|
G
|
|
83S_L3_I033
|
G
|
|
84S_L5_I006
|
G
|
|
85S_L5_I007
|
R
|
|
86S_L5_I008
|
G
|
|
87S_L5_I010
|
R
|
|
89S_L6_I012
|
G
|
|
91S_L4_I022
|
G
|
|
92S_L5_I023
|
G
|
|
93S_L7_I024
|
G
|
|
95S_L8_I025
|
R
|
|
96S_L4_I026
|
G
|
|
97S_L8_I027
|
A
|
|
99S_L2_I035
|
A
|
|
9S
|
G
|
|
A1
|
A
|
|
A10
|
G
|
|
A12
|
R
|
|
A14
|
R
|
|
A3
|
R
|
|
A8
|
A
|
|
BLO1
|
R
|
|
BLO15
|
A
|
|
BLO2
|
G
|
|
BLO3_L4_I022
|
G
|
|
BOJA2
|
R
|
|
GVF
|
G
|
|
India11
|
A
|
|
India15
|
G
|
|
India17
|
A
|
|
India19
|
A
|
|
India21
|
A
|
|
India25
|
R
|
|
India27
|
G
|
|
India31
|
G
|
|
India35
|
A
|
|
India37
|
G
|
|
India39
|
G
|
|
India41
|
G
|
|
India43
|
A
|
|
India45
|
R
|
|
India5
|
R
|
|
India55
|
A
|
|
India7
|
G
|
|
L2
|
R
|
|
N1
|
R
|
|
N11
|
R
|
|
N18
|
G
|
|
N3
|
G
|
|
N5
|
G
|
|
S-f2_I107
|
G
|
|
S-f3_I108
|
R
|
|
S-f4_L4_I109
|
R
|
|
S-m1_I101
|
A
|
|
S-m2_I102
|
A
|
|
S-m3_I103
|
A
|
|
S-m4_L2_I104
|
A
|
|
S-m5_I105
|
A
|
|
S6
|
A
|
|
SAMN02486156
|
G
|
|
SAMN02486158
|
G
|
|
SAMN02486159
|
G
|
|
SAMN02486160
|
G
|
|
SAMN02486161
|
G
|
|
SAMN02486163
|
G
|
|
SAMN02486164
|
G
|
|
SAMN02486165
|
R
|
|
SAMN02486166
|
G
|
|
SAMN02486167
|
G
|
|
Silkia
|
A
|
|
T5
|
G
|
|
TD12
|
A
|
|
TD22
|
G
|
|
TD27
|
R
|
|
TD6
|
R
|
|
Tibet
|
G
|
|
Xcelris_12
|
R
|
|
Xcelris_127
|
G
|
|
Xcelris_12A
|
G
|
|
Xcelris_13B
|
G
|
|
Xcelris_141
|
G
|
|
Xcelris_143
|
G
|
|
Xcelris_144
|
G
|
|
Xcelris_14A
|
G
|
|
Xcelris_1B
|
G
|
|
Xcelris_219
|
A
|
|
Xcelris_221
|
G
|
|
Xcelris_226
|
G
|
|
Xcelris_280
|
G
|
|
Xcelris_335
|
R
|
|
Xcelris_336
|
G
|
|
Xcelris_377
|
G
|
|
Xcelris_379
|
G
|
|
Xcelris_380
|
A
|
|
Xcelris_4A
|
G
|
|
Xcelris_4B
|
G
|
|
Xcelris_5A
|
R
|
|
Xcelris_8A
|
G
|
|
Xcelris_8B
|
G
|
|
Xcelris_97
|
G
|
|
Xcelris_98
|
G
|
|
Xcelris_MT-48
|
G
|
|
Y1-f1_L5_I119
|
R
|
|
Y1-f2_L6_I121
|
R
|
|
Y1-f3_L7_I101
|
R
|
|
Y1-m1_L6_I120
|
A
|
|
Y1-m2_L4_I122
|
A
|
|
Y1-m3_L7_I123
|
A
|
|
Y1-m4_I124
|
A
|
|
Y1-m5_L7_I102
|
A
|
|
YPt601
|
G
|
|
YPt604
|
G
|
|
YPt610
|
G
|
|
YPt637
|
G
|
|
YPt641
|
G
|
|
YPt648
|
G
|
|
You1
|
A
|
|
You3_L7_I1000005
|
G
|
|
Ypt566
|
G
|
|
Ypt570
|
G
|
|
Ypt571
|
G
|
|
Ypt572
|
G
|
|
Ypt573
|
G
|
|
Ypt574
|
G
|
|
Ypt575
|
G
|
|
Ypt577
|
G
|
|
Ypt579
|
G
|
|
Ypt580
|
G
|
|
Ypt582
|
G
|
|
Ypt583
|
G
|
|
Ypt587
|
G
|
|
Ypt589
|
G
|
|
Ypt591
|
G
|
|
Ypt592
|
G
|
|
Ypt594
|
G
|
|
Ypt595
|
G
|
|
Ypt598
|
G
|
|
Ypt599
|
G
|
|
Ypt600
|
G
|
|
Ypt602
|
G
|
|
Ypt603
|
G
|
|
Ypt606
|
G
|
|
Ypt623
|
G
|
|
Ypt626
|
G
|
|
Ypt638
|
G
|
|
Ypt640
|
G
|
|
Ypt642
|
G
|
|
Ypt646
|
G
|
|
Yt517
|
G
|
|
Yt519
|
G
|
|
Yt520
|
G
|
|
Yt521
|
G
|
|
Yt525
|
G
|
|
Yt527
|
G
|
|
Yt529
|
G
|
|
Yt539
|
G
|
|
ZJ4
|
G
|
|
india3
|
G
|
|
production
|
G
|
|
ypt171_L2_I021
|
R
|
|
ypt2051_L3_I003
|
G
|
|
ypt2053_L6_I004
|
R
|
|
ypt2063_L6_I005
|
G
|
|
ypt2071_L1_I038
|
R
|
|
ypt2086
|
R
|
|
ypt2087
|
A
|
|
ypt2092
|
A
|
|
ypt2093
|
A
|
|
ypt2094
|
A
|
|
ypt2095
|
G
|
|
ypt2100
|
G
|
|
ypt2102
|
G
|
|
ypt2106
|
G
|
|
ypt2107
|
A
|
|
ypt2109
|
G
|
|
ypt2110
|
G
|
|
ypt2114
|
G
|
|
ypt2115
|
R
|
|
ypt2118
|
G
|
|
ypt2119
|
G
|
|
ypt2120
|
G
|
|
ypt2124_L4_I052
|
G
|
|
ypt2126_L3_I053
|
G
|
|
ypt2127_L1_I036
|
R
|
|
ypt2128_L6_I054
|
A
|
|
ypt2144_L6_I055
|
A
|
|
ypt2145_L6_I056
|
A
|
|
ypt2146_L6_I001
|
R
|
|
ypt2167
|
R
|
|
ypt2168
|
R
|
|
ypt2169
|
A
|
|
ypt2173
|
A
|
|
ypt2175
|
G
|
|
ypt2177
|
G
|
|
ypt2178
|
G
|
|
ypt217_L2_I024
|
A
|
|
ypt2184
|
G
|
|
ypt2185
|
G
|
|
ypt2186
|
G
|
|
ypt2187
|
G
|
|
ypt2191
|
G
|
|
ypt2201
|
G
|
|
ypt2209
|
R
|
|
ypt2216
|
A
|
|
ypt2217
|
A
|
|
ypt2220
|
R
|
|
ypt2221
|
A
|
|
ypt2441
|
A
|
|
ypt2442
|
G
|
|
ypt2443
|
G
|
|
ypt2444
|
G
|
|
ypt2445
|
A
|
|
ypt2446
|
G
|
|
ypt2447
|
R
|
|
ypt2448
|
R
|
|
ypt2454
|
R
|
|
ypt2468
|
R
|
|
ypt2496
|
R
|
|
ypt2497
|
R
|
|
ypt2498
|
G
|
|
ypt2499
|
A
|
|
ypt2500
|
R
|
|
ypt2503
|
G
|
|
ypt2504
|
G
|
|
ypt2507
|
G
|
|
ypt2512
|
G
|
|
ypt2516
|
G
|
|
ypt2523
|
G
|
|
ypt2534
|
G
|
|
ypt2541
|
G
|
|
ypt2543
|
G
|
|
ypt2544
|
A
|
|
ypt2546
|
A
|
|
ypt2547
|
A
|
|
ypt2552
|
A
|
|
ypt2562
|
A
|
|
ypt2569
|
G
|
|
ypt2572
|
G
|
|
ypt2573
|
G
|
|
ypt2574
|
R
|
|
ypt2579
|
G
|
|
ypt258_L3_I028
|
A
|
|
ypt2606
|
A
|
|
ypt2608
|
G
|
|
ypt2615
|
G
|
|
ypt2622
|
A
|
|
ypt2623
|
G
|
|
ypt2624
|
G
|
|
ypt2629
|
A
|
|
ypt262_L3_I030
|
A
|
|
ypt2630
|
R
|
|
ypt2636
|
G
|
|
ypt2643
|
G
|
|
ypt2644
|
G
|
|
ypt2646
|
G
|
|
ypt264_L3_I032
|
A
|
|
ypt2650
|
A
|
|
ypt2653
|
A
|
|
ypt2656
|
R
|
|
ypt2657
|
G
|
|
ypt2658
|
A
|
|
ypt2661
|
R
|
|
ypt2664
|
A
|
|
ypt2665
|
R
|
|
ypt2669
|
G
|
|
ypt2670
|
A
|
|
ypt2671
|
A
|
|
ypt2672
|
R
|
|
ypt2673
|
G
|
|
ypt2678
|
A
|
|
ypt2706
|
A
|
|
ypt2724
|
R
|
|
ypt2729
|
A
|
|
ypt2733
|
R
|
|
ypt2739
|
G
|
|
ypt2760
|
A
|
|
ypt2761
|
G
|
|
ypt2765
|
G
|
|
ypt2766
|
G
|
|
ypt2780
|
A
|
|
ypt2781
|
G
|
|
ypt2782
|
A
|
|
ypt2784
|
A
|
|
ypt2785
|
G
|
|
ypt2786
|
G
|
|
ypt2788
|
A
|
|
ypt2789
|
A
|
|
ypt2790
|
A
|
|
ypt2791
|
R
|
|
ypt2792
|
G
|
|
ypt2799
|
G
|
|
ypt2800
|
G
|
|
ypt2808
|
G
|
|
ypt2810
|
R
|
|
ypt2812
|
G
|
|
ypt2813
|
R
|
|
ypt2815
|
G
|
|
ypt2817
|
G
|
|
ypt2819
|
G
|
|
ypt2821
|
G
|
|
ypt2822
|
R
|
|
ypt2823
|
G
|
|
ypt2824
|
A
|
|
ypt2826
|
A
|
|
ypt2827
|
G
|
|
ypt2828
|
A
|
|
ypt2831
|
G
|
|
ypt2832
|
R
|
|
ypt2842
|
R
|
|
ypt2843
|
R
|
|
ypt2849
|
A
|
|
ypt2862
|
R
|
|
ypt2870
|
A
|
|
ypt2871
|
G
|
|
ypt2887
|
G
|
|
ypt2888
|
R
|
|
ypt2891_L3_I041
|
G
|
|
ypt2893_L3_I025
|
A
|
|
ypt2895_L3_I026
|
G
|
|
ypt2902
|
A
|
|
ypt2909
|
A
|
|
ypt2910
|
A
|
|
ypt2912
|
R
|
|
ypt2918
|
G
|
|
ypt2930
|
G
|
|
ypt3002
|
A
|
|
ypt3003
|
G
|
|
ypt3004
|
G
|
|
ypt3005
|
G
|
|
ypt3006
|
A
|
|
ypt3007
|
R
|
|
ypt3009
|
R
|
|
ypt3011
|
A
|
|
ypt3028
|
G
|
|
ypt3040
|
R
|
|
ypt3041
|
R
|
|
ypt3042
|
R
|
|
ypt3044
|
G
|
|
ypt3045
|
G
|
|
ypt3046
|
G
|
|
ypt3052
|
G
|
|
ypt3061
|
R
|
|
ypt3069
|
R
|
|
ypt3072
|
A
|
|
ypt3133
|
A
|
|
ypt3134
|
A
|
|
ypt3135
|
A
|
|
ypt3136
|
A
|
|
ypt3137
|
A
|
|
ypt3138
|
G
|
|
ypt3140
|
G
|
|
ypt3141
|
G
|
|
ypt3142
|
G
|
|
ypt3143
|
G
|
|
ypt3145
|
G
|
|
ypt3146
|
G
|
|
ypt3149_L2_I034
|
R
|
|
ypt3150_L8_I023
|
G
|
|
ypt3159_L6_I035
|
G
|
|
ypt3160_L8_I024
|
A
|
|
ypt3180
|
G
|
|
ypt3182_L1_I039
|
A
|
|
ypt3190_L8_I026
|
G
|
|
ypt3191_L2_I041
|
R
|
|
ypt3195_L1_I042
|
R
|
|
ypt3197_L1_I044
|
G
|
|
ypt3220_L1_I031
|
R
|
|
ypt3222_L1_I033
|
G
|
|
ypt3226_L3_I044
|
G
|
|
ypt3238_L3_I046
|
G
|
|
ypt3240_L6_I054
|
G
|
|
ypt3243_L8_I047
|
G
|
|
ypt3245
|
G
|
|
ypt3246_L6_I050
|
G
|
|
ypt3261_L7_I004
|
G
|
|
ypt3262_L7_I005
|
A
|
|
ypt3269_L7_I006
|
G
|
|
ypt3272_L7_I010
|
G
|
|
ypt3289_L8_I021
|
G
|
|
ypt891
|
R
|
|
ypt896_L2_I047
|
G
|
|
ypt901_L1_I052
|
G
|
|
ypt903_L2_I054
|
G
|
|
ypt904_L4_I055
|
A
|
|
ypt913
|
G
|
|
ypt915
|
G
|
|
ypt917
|
R
|
|
ypt926_L2_I023
|
G
|
|
ypt928
|
G
|
|
ypt930
|
G
|
|
ypt931
|
G
|
|
ypt936
|
G
|
|
ypt941_L5_I027
|
R
|
|
ypt942_L7_I028
|
R
|
|
ypt943
|
R
|
|
ypt944_L3_I030
|
A
|
|
ypt945_L4_I031
|
A
|
|
ypt946_L4_I032
|
A
|
|
ypt947_L5_I033
|
A
|
|
ypt948_L2_I034
|
A
|
|
ypt950_L5_I036
|
G
|
|
ypt951
|
G
|
|
ypt953
|
G
|
|
ypt954
|
G
|
|
ypt955
|
G
|
|
ypt956x
|
G
|
|
ypt957
|
A
|
|
ypt958
|
G
|
|
ypt959
|
G
|
|
ypt963
|
G
|
|
ypt964
|
G
|
|
ypt965
|
G
|
|
ypt966
|
G
|
|
ypt971
|
G
|
|
ypt972x
|
G
|
|
ypt974
|
G
|
|
ypt976_L7_I040
|
G
|
|
ypt977_L2_I041
|
G
|
|
ypt979_L6_I042
|
G
|
|
ypt980_L3_I043
|
G
|
|
yptwj
|
G
|
|
147830
|
G
|
|
Gallus_Sonneriatii_d
|
G
|
|
Ypt4000
|
G
|
|
Ypt4880
|
G
|
