ChickenSD

ChickenSD / Individual SNP / ggaS0013004646650

Detail information of ggaS0013004646650

1.General Information

SNP ID: ggaS0013004646650
Organism: Gallus gallus
Individual: 111S_L3_I047

2.Allele information

Platform: SOLEXA
Method: sequence
SNP Class: SNP
Genotype: C

3.Reference Map information

Chrom Position Reference 111S_L3_I047
chrW 25185 T C

4.Gene information

Var ID Gene ID Transcript ID Gene Symbol Variant Effect Biotype cDNA Position Allele Change Protein ID Protein Position Residue Change
ggaS0013004646650 ENSGALG00000005785 - intron_variant => =>
ggaS0013004646650 ENSGALG00000025758 - upstream_gene_variant => =>

5.Individual Genotype

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Individual Genotype
101S_L1_I028 Y
102S_L3_I037 C
109S_L5_I033 C
10S_L1_I052 T
110S_L4_I034 T
112S_L3_I035 C
113S_L1_I036 T
114S_L3_I037 Y
116S_L6_I038 Y
118S_L4_I040 Y
11S Y
120S_L1_I041 Y
121S_L3_I042 Y
122S_L4_I043 T
123S_L4_I044 C
124S_L2_I048 Y
125S_L3_I050 T
126S_L3_I051 T
127S_L2_I045 T
128S_L1_I042 T
129S_L3_I043 T
130S_L4_I044 T
131S_L2_I045 T
132S_L2_I046 T
133S_L8_I046 T
134S_L2_I047 C
13S_L7_I012 C
14S_L2_I021 C
15S_L6_I022 C
16S_L5_I023 C
18833 T
19912 T
19S_L4_I026 T
1S Y
20S_L7_I027 T
21S_L6_I028 C
25S_L3_I032 C
26S T
27S_L4_I034 T
28S_L4_I035 C
29S_L3_I036 T
2S T
33S C
35S_L5_I041 C
36S_L5_I042 Y
37S_L2_I043 T
3S_L4_I003 C
41S_L5_I045 T
42S_L3_I055 T
43S T
44S_L4_I001 C
45S_L2_I002 C
46S_L4_I003 C
47S_L3_I046 Y
48S_L1_I004 T
49S_L1_I005 C
4S_L4_I004 Y
50S_L1_I047 C
51S_L6_I048 Y
52S_L2_I050 T
53S_L2_I006 C
54S_L2_I007 C
55S_L1_I008 Y
56S_L1_I010 T
57S_L3_I046 C
58S_L4_I051 C
5S Y
60S_L5_I053 C
61S_L8_I054 Y
62S_L8_I055 T
66S_L2_I003 C
67S_L1_I011 T
68S_L3_I012 T
69S T
70S C
71S_L3_I023 T
72S_L1_I024 C
74S_L4_I026 C
75S_L3_I027 T
76S_L1_I028 T
79S_L2_I031 C
7S_L4_I007 C
80S_L3_I004 Y
81S_L1_I005 T
82S T
83S_L3_I033 T
84S_L5_I006 T
85S_L5_I007 Y
86S_L5_I008 T
87S_L5_I010 Y
89S_L6_I012 T
91S_L4_I022 T
92S_L5_I023 T
93S_L7_I024 T
95S_L8_I025 Y
96S_L4_I026 T
97S_L8_I027 C
99S_L2_I035 C
9S T
A1 C
A10 T
A12 Y
A14 Y
A3 Y
A8 C
BLO1 T
BLO15 C
BLO2 T
BLO3_L4_I022 T
BOJA2 T
GVF T
India11 C
India15 T
India17 C
India19 C
India21 C
India25 Y
India27 T
India31 T
India35 C
India37 T
India39 T
India41 T
India43 C
India45 Y
India5 Y
India55 C
India7 T
L2 Y
N1 Y
N11 Y
N18 T
N3 T
N5 T
S-f2_I107 T
S-f3_I108 Y
S-f4_L4_I109 Y
S-m1_I101 C
S-m2_I102 C
S-m3_I103 C
S-m4_L2_I104 C
S-m5_I105 C
S6 C
SAMN02486156 T
SAMN02486158 T
SAMN02486159 T
SAMN02486160 T
SAMN02486161 T
SAMN02486163 T
SAMN02486164 T
SAMN02486165 Y
SAMN02486166 T
SAMN02486167 T
Silkia C
T5 T
TD12 C
TD22 T
TD27 Y
TD30 T
TD6 Y
Tibet T
Xcelris_12 Y
Xcelris_128 C
Xcelris_12A T
Xcelris_13B T
Xcelris_141 T
Xcelris_144 T
Xcelris_14A T
Xcelris_14B T
Xcelris_1B T
Xcelris_219 C
Xcelris_221 T
Xcelris_222 T
Xcelris_226 T
Xcelris_280 T
Xcelris_332 T
Xcelris_335 Y
Xcelris_336 T
Xcelris_339 C
Xcelris_377 T
Xcelris_379 T
Xcelris_4A T
Xcelris_5A Y
Xcelris_77 C
Xcelris_8A T
Xcelris_8B T
Xcelris_97 T
Xcelris_98 T
Xcelris_MT-48 T
Y1-f1_L5_I119 Y
Y1-f2_L6_I121 Y
Y1-f3_L7_I101 Y
Y1-m1_L6_I120 C
Y1-m2_L4_I122 C
Y1-m3_L7_I123 C
Y1-m4_I124 C
Y1-m5_L7_I102 C
YPt601 T
YPt604 T
YPt610 T
YPt637 T
YPt641 T
YPt648 T
You1 C
You3_L7_I1000005 T
Ypt566 T
Ypt570 T
Ypt571 T
Ypt572 T
Ypt573 T
Ypt574 T
Ypt575 T
Ypt577 T
Ypt579 T
Ypt580 T
Ypt582 T
Ypt583 T
Ypt587 T
Ypt589 T
Ypt591 T
Ypt592 T
Ypt594 T
Ypt595 T
Ypt598 T
Ypt599 T
Ypt600 T
Ypt602 T
Ypt603 T
Ypt606 T
Ypt623 T
Ypt626 T
Ypt638 T
Ypt640 T
Ypt642 T
Ypt646 T
Yt517 T
Yt519 T
Yt520 T
Yt521 T
Yt525 T
Yt527 T
Yt529 T
Yt539 T
ZJ4 T
india3 T
production T
ypt171_L2_I021 Y
ypt2051_L3_I003 T
ypt2053_L6_I004 Y
ypt2063_L6_I005 T
ypt2071_L1_I038 Y
ypt2086 Y
ypt2087 C
ypt2092 C
ypt2094 C
ypt2095 T
ypt2100 T
ypt2102 T
ypt2106 T
ypt2107 C
ypt2109 T
ypt2110 T
ypt2114 T
ypt2115 Y
ypt2118 T
ypt2119 T
ypt2120 T
ypt2124_L4_I052 T
ypt2126_L3_I053 T
ypt2127_L1_I036 Y
ypt2128_L6_I054 C
ypt2144_L6_I055 C
ypt2145_L6_I056 C
ypt2146_L6_I001 Y
ypt2167 Y
ypt2168 Y
ypt2169 C
ypt2173 C
ypt2175 T
ypt2177 T
ypt2178 T
ypt217_L2_I024 C
ypt2184 T
ypt2185 T
ypt2186 T
ypt2187 T
ypt2191 T
ypt2201 T
ypt2209 Y
ypt2216 C
ypt2217 C
ypt2220 Y
ypt2221 C
ypt2441 C
ypt2442 T
ypt2443 T
ypt2444 T
ypt2445 C
ypt2446 T
ypt2447 Y
ypt2448 Y
ypt2454 Y
ypt2468 Y
ypt2496 Y
ypt2497 Y
ypt2498 T
ypt2499 C
ypt2500 Y
ypt2503 T
ypt2504 T
ypt2507 T
ypt2512 T
ypt2516 T
ypt2523 T
ypt2534 T
ypt2541 T
ypt2543 T
ypt2544 C
ypt2546 C
ypt2547 C
ypt2552 C
ypt2562 C
ypt2569 T
ypt2572 T
ypt2573 T
ypt2574 Y
ypt2579 T
ypt258_L3_I028 C
ypt2606 C
ypt2608 T
ypt2615 T
ypt2622 C
ypt2623 T
ypt2624 T
ypt2629 C
ypt262_L3_I030 C
ypt2630 Y
ypt2636 T
ypt2640 C
ypt2643 T
ypt2644 T
ypt2646 T
ypt264_L3_I032 C
ypt2650 C
ypt2653 C
ypt2656 Y
ypt2657 T
ypt2658 C
ypt2661 Y
ypt2664 C
ypt2665 Y
ypt2669 T
ypt2670 C
ypt2671 C
ypt2672 Y
ypt2673 T
ypt2678 C
ypt2706 C
ypt2724 Y
ypt2729 C
ypt2733 Y
ypt2739 T
ypt2760 C
ypt2761 T
ypt2765 T
ypt2766 T
ypt2780 C
ypt2781 T
ypt2782 C
ypt2784 C
ypt2785 T
ypt2786 T
ypt2789 C
ypt2790 C
ypt2791 Y
ypt2792 T
ypt2799 T
ypt2800 T
ypt2808 T
ypt2810 Y
ypt2812 T
ypt2813 Y
ypt2815 T
ypt2817 T
ypt2819 T
ypt2821 T
ypt2822 Y
ypt2823 T
ypt2824 C
ypt2826 C
ypt2827 T
ypt2828 C
ypt2831 T
ypt2832 Y
ypt2842 Y
ypt2843 Y
ypt2849 C
ypt2862 T
ypt2870 C
ypt2871 T
ypt2887 T
ypt2888 T
ypt2891_L3_I041 T
ypt2893_L3_I025 C
ypt2895_L3_I026 T
ypt2902 C
ypt2909 C
ypt2910 C
ypt2912 Y
ypt2918 T
ypt2930 T
ypt3002 C
ypt3003 T
ypt3004 T
ypt3005 T
ypt3006 C
ypt3007 Y
ypt3009 Y
ypt3011 C
ypt3028 T
ypt3040 Y
ypt3041 Y
ypt3042 Y
ypt3044 T
ypt3045 T
ypt3046 T
ypt3052 T
ypt3061 Y
ypt3069 Y
ypt3072 C
ypt3133 C
ypt3134 C
ypt3135 C
ypt3136 C
ypt3137 C
ypt3138 T
ypt3140 T
ypt3141 T
ypt3142 T
ypt3143 T
ypt3145 T
ypt3146 T
ypt3149_L2_I034 Y
ypt3150_L8_I023 T
ypt3159_L6_I035 T
ypt3160_L8_I024 C
ypt3180 T
ypt3182_L1_I039 C
ypt3190_L8_I026 T
ypt3191_L2_I041 Y
ypt3193_L1_I027 T
ypt3195_L1_I042 Y
ypt3197_L1_I044 T
ypt3220_L1_I031 Y
ypt3224_L8_I043 C
ypt3226_L3_I044 T
ypt3238_L3_I046 T
ypt3240_L6_I054 T
ypt3245 T
ypt3246_L6_I050 T
ypt3247_L6_I051 T
ypt3261_L7_I004 T
ypt3262_L7_I005 C
ypt3269_L7_I006 T
ypt3270_L1_I007 T
ypt3272_L7_I010 T
ypt3289_L8_I021 T
ypt55_L1_I033 T
ypt891 Y
ypt896_L2_I047 T
ypt897_L3_I048 C
ypt901_L1_I052 T
ypt903_L2_I054 T
ypt913 T
ypt917 Y
ypt923_L2_I051 C
ypt926_L2_I023 T
ypt928 T
ypt930 T
ypt931 T
ypt936 T
ypt941_L5_I027 Y
ypt942_L7_I028 Y
ypt943 Y
ypt944_L3_I030 C
ypt945_L4_I031 C
ypt946_L4_I032 C
ypt947_L5_I033 C
ypt948_L2_I034 C
ypt950_L5_I036 T
ypt951 T
ypt953 T
ypt954 T
ypt955 T
ypt956x T
ypt957 C
ypt958 T
ypt959 T
ypt963 T
ypt964 T
ypt965 T
ypt966 T
ypt971 T
ypt972x T
ypt974 T
ypt976_L7_I040 T
ypt977_L2_I041 T
ypt979_L6_I042 T
ypt980_L3_I043 T
yptwj T
147830 T
Gallus_Sonneriatii_d T
Ypt4000 T
Ypt4880 T