ChickenSD
Detail information of ggaS0013004646644
1.General Information
SNP ID: |
ggaS0013004646644 |
Organism: |
Gallus gallus |
Individual: |
111S_L3_I047 |
2.Allele information
Platform: |
SOLEXA |
Method: |
sequence |
SNP Class: |
SNP |
Genotype: |
T |
3.Reference Map information
Chrom |
Position |
Reference |
111S_L3_I047
|
chrW
|
7546
|
C
|
T
|
4.Gene information
Var ID |
Gene ID |
Transcript ID |
Gene Symbol |
Variant Effect |
Biotype |
cDNA Position |
Allele Change |
Protein ID |
Protein Position |
Residue Change |
ggaS0013004646644 |
ENSGALG00000025736
|
|
- |
3_prime_UTR_variant |
|
|
=>
|
|
|
=>
|
5.Individual Genotype
Individual |
Genotype |
103S
|
T
|
108S_L6_I032
|
T
|
10S_L1_I052
|
T
|
113S_L1_I036
|
T
|
114S_L3_I037
|
T
|
116S_L6_I038
|
T
|
118S_L4_I040
|
C
|
119S_L3_I041
|
C
|
120S_L1_I041
|
C
|
121S_L3_I042
|
C
|
123S_L4_I044
|
C
|
124S_L2_I048
|
T
|
126S_L3_I051
|
C
|
127S_L2_I045
|
C
|
128S_L1_I042
|
T
|
129S_L3_I043
|
Y
|
130S_L4_I044
|
T
|
131S_L2_I045
|
C
|
132S_L2_I046
|
Y
|
133S_L8_I046
|
Y
|
134S_L2_I047
|
C
|
135S_L3_I048
|
C
|
13S_L7_I012
|
C
|
14S_L2_I021
|
C
|
15S_L6_I022
|
T
|
16S_L5_I023
|
C
|
18833
|
C
|
19912
|
C
|
19S_L4_I026
|
C
|
1S
|
C
|
21S_L6_I028
|
C
|
22S_L6_I029
|
C
|
23S_L2_I030
|
T
|
24S_L4_I031
|
C
|
27S_L4_I034
|
C
|
28S_L4_I035
|
Y
|
29S_L3_I036
|
C
|
2S
|
T
|
30S_L2_I037
|
T
|
31S_L3_I038
|
T
|
32S_L1_I039
|
T
|
33S
|
Y
|
35S_L5_I041
|
T
|
38S_L6_I044
|
T
|
3S_L4_I003
|
Y
|
40S_L2_I054
|
C
|
41S_L5_I045
|
T
|
42S_L3_I055
|
C
|
45S_L2_I002
|
C
|
49S_L1_I005
|
T
|
4S_L4_I004
|
T
|
51S_L6_I048
|
T
|
54S_L2_I007
|
T
|
56S_L1_I010
|
T
|
57S_L3_I046
|
C
|
5S
|
T
|
60S_L5_I053
|
T
|
63S_L5_I056
|
T
|
64S_L4_I001
|
T
|
65S_L5_I002
|
T
|
67S_L1_I011
|
T
|
68S_L3_I012
|
C
|
6S
|
T
|
70S
|
C
|
73S_L1_I025
|
T
|
75S_L3_I027
|
Y
|
76S_L1_I028
|
T
|
77S_L4_I029
|
Y
|
78S_L4_I030
|
C
|
7S_L4_I007
|
Y
|
80S_L3_I004
|
C
|
82S
|
T
|
83S_L3_I033
|
T
|
84S_L5_I006
|
T
|
85S_L5_I007
|
T
|
86S_L5_I008
|
C
|
87S_L5_I010
|
C
|
90S_L4_I021
|
C
|
92S_L5_I023
|
Y
|
93S_L7_I024
|
C
|
96S_L4_I026
|
C
|
99S_L2_I035
|
C
|
9S
|
T
|
A1
|
T
|
A10
|
T
|
A12
|
C
|
A14
|
Y
|
A3
|
Y
|
A8
|
T
|
BLO15
|
T
|
GVF
|
T
|
India17
|
C
|
India23
|
C
|
India25
|
T
|
India27
|
C
|
India29
|
C
|
India31
|
C
|
India33
|
C
|
India37
|
C
|
India47
|
T
|
India5
|
Y
|
India51
|
C
|
India57
|
T
|
India59
|
C
|
India7
|
Y
|
L2
|
Y
|
N3
|
T
|
N7
|
T
|
N8
|
T
|
S-f2_I107
|
C
|
SAMN02486156
|
T
|
SAMN02486158
|
T
|
SAMN02486159
|
C
|
SAMN02486160
|
T
|
SAMN02486161
|
T
|
SAMN02486163
|
T
|
SAMN02486164
|
C
|
SAMN02486166
|
C
|
SAMN02486167
|
C
|
Silkia
|
T
|
T3
|
T
|
T5
|
Y
|
TD12
|
T
|
TD15
|
C
|
TD22
|
C
|
TD30
|
C
|
TD9
|
T
|
Tibet
|
Y
|
Xcelris_104
|
T
|
Xcelris_112
|
T
|
Xcelris_12
|
T
|
Xcelris_120
|
T
|
Xcelris_14
|
C
|
Xcelris_144
|
T
|
Xcelris_174
|
C
|
Xcelris_175
|
Y
|
Xcelris_176
|
C
|
Xcelris_1B
|
Y
|
Xcelris_219
|
T
|
Xcelris_221
|
T
|
Xcelris_224
|
T
|
Xcelris_227
|
T
|
Xcelris_332
|
T
|
Xcelris_336
|
C
|
Xcelris_341
|
T
|
Xcelris_377
|
C
|
Xcelris_379
|
C
|
Xcelris_380
|
T
|
Xcelris_383
|
T
|
Xcelris_392
|
T
|
Xcelris_394
|
T
|
Xcelris_44
|
T
|
Xcelris_5A
|
Y
|
Xcelris_5B
|
T
|
Xcelris_67
|
T
|
Xcelris_6A
|
T
|
Xcelris_6B
|
T
|
Xcelris_77
|
T
|
Xcelris_8
|
T
|
Xcelris_8A
|
C
|
Xcelris_8B
|
C
|
Xcelris_97
|
C
|
Xcelris_MT-134
|
T
|
Xcelris_MT-18
|
T
|
Xcelris_MT-99
|
T
|
Y1-f1_L5_I119
|
T
|
Y1-m2_L4_I122
|
T
|
YPt610
|
C
|
YPt637
|
C
|
YPt641
|
T
|
YPt648
|
C
|
Ypt567
|
C
|
Ypt568
|
T
|
Ypt570
|
C
|
Ypt571
|
T
|
Ypt572
|
T
|
Ypt573
|
C
|
Ypt574
|
C
|
Ypt577
|
T
|
Ypt578
|
T
|
Ypt579
|
T
|
Ypt580
|
Y
|
Ypt583
|
C
|
Ypt584
|
T
|
Ypt585
|
T
|
Ypt587
|
T
|
Ypt588
|
T
|
Ypt589
|
T
|
Ypt598
|
C
|
Ypt599
|
C
|
Ypt606
|
Y
|
Ypt608
|
C
|
Ypt623
|
Y
|
Ypt626
|
T
|
Ypt638
|
C
|
Ypt642
|
Y
|
Ypt643
|
T
|
Ypt646
|
T
|
Yt516
|
C
|
Yt517
|
T
|
Yt518
|
C
|
Yt519
|
Y
|
Yt520
|
T
|
Yt521
|
Y
|
Yt523
|
T
|
Yt525
|
C
|
Yt527
|
T
|
Yt528
|
Y
|
Yt531
|
C
|
Yt536
|
C
|
Yt538
|
C
|
Yt539
|
Y
|
Yt540
|
T
|
ZJ1
|
C
|
ZJ3
|
T
|
ZJ4
|
C
|
india3
|
C
|
india49
|
C
|
production
|
C
|
ypt169_L3_I011
|
C
|
ypt171_L2_I021
|
Y
|
ypt173_L2_I022
|
C
|
ypt175_L2_I023
|
T
|
ypt2041_L6_I002
|
C
|
ypt2043_L1_I037
|
C
|
ypt2071_L1_I038
|
C
|
ypt2082
|
T
|
ypt2086
|
T
|
ypt2092
|
C
|
ypt2095
|
Y
|
ypt2100
|
C
|
ypt2101
|
C
|
ypt2103
|
C
|
ypt2107
|
C
|
ypt2108
|
C
|
ypt2110
|
T
|
ypt2111
|
C
|
ypt2112
|
C
|
ypt2114
|
C
|
ypt2115
|
T
|
ypt2116
|
C
|
ypt2117
|
C
|
ypt2119
|
C
|
ypt2120
|
C
|
ypt2121
|
C
|
ypt2122
|
T
|
ypt2144_L6_I055
|
C
|
ypt2164
|
Y
|
ypt2165
|
Y
|
ypt2166
|
Y
|
ypt2167
|
C
|
ypt2169
|
C
|
ypt2170
|
T
|
ypt2171
|
Y
|
ypt2173
|
C
|
ypt2176
|
C
|
ypt2177
|
T
|
ypt2178
|
T
|
ypt217_L2_I024
|
T
|
ypt2184
|
T
|
ypt2185
|
C
|
ypt2187
|
Y
|
ypt2190
|
T
|
ypt2214
|
C
|
ypt2215
|
C
|
ypt2216
|
C
|
ypt2217
|
C
|
ypt2222
|
T
|
ypt2440
|
T
|
ypt2442
|
T
|
ypt2444
|
C
|
ypt2446
|
T
|
ypt2447
|
T
|
ypt2448
|
T
|
ypt2454
|
C
|
ypt2459
|
C
|
ypt2496
|
C
|
ypt2497
|
C
|
ypt2499
|
C
|
ypt2500
|
T
|
ypt2504
|
C
|
ypt2507
|
C
|
ypt2512
|
T
|
ypt2516
|
Y
|
ypt2523
|
T
|
ypt2534
|
C
|
ypt2541
|
Y
|
ypt2543
|
Y
|
ypt2544
|
C
|
ypt2545
|
C
|
ypt2546
|
C
|
ypt2547
|
C
|
ypt2552
|
T
|
ypt2562
|
C
|
ypt2569
|
C
|
ypt2572
|
C
|
ypt2573
|
C
|
ypt2574
|
C
|
ypt258_L3_I028
|
C
|
ypt2598
|
C
|
ypt259_L2_I029
|
T
|
ypt2601
|
C
|
ypt2615
|
C
|
ypt2622
|
Y
|
ypt2623
|
C
|
ypt2624
|
T
|
ypt2625
|
T
|
ypt2627
|
T
|
ypt2628
|
T
|
ypt2629
|
Y
|
ypt262_L3_I030
|
T
|
ypt2638
|
T
|
ypt2640
|
Y
|
ypt2641
|
C
|
ypt2643
|
T
|
ypt2644
|
C
|
ypt2650
|
C
|
ypt2658
|
T
|
ypt2661
|
T
|
ypt2665
|
T
|
ypt2671
|
T
|
ypt2673
|
T
|
ypt2678
|
C
|
ypt2724
|
T
|
ypt2729
|
T
|
ypt2740
|
T
|
ypt2745
|
T
|
ypt2746
|
T
|
ypt2761
|
T
|
ypt2765
|
C
|
ypt2775
|
T
|
ypt2780
|
C
|
ypt2783
|
T
|
ypt2785
|
Y
|
ypt2786
|
T
|
ypt2787
|
Y
|
ypt2788
|
C
|
ypt2790
|
Y
|
ypt2791
|
C
|
ypt2799
|
T
|
ypt2800
|
T
|
ypt2808
|
T
|
ypt2810
|
T
|
ypt2812
|
C
|
ypt2813
|
C
|
ypt2816
|
C
|
ypt2819
|
Y
|
ypt2821
|
C
|
ypt2823
|
C
|
ypt2826
|
C
|
ypt2827
|
T
|
ypt2828
|
T
|
ypt2831
|
T
|
ypt2832
|
C
|
ypt2842
|
Y
|
ypt2843
|
Y
|
ypt2849
|
T
|
ypt2870
|
T
|
ypt2891_L3_I041
|
T
|
ypt2902
|
C
|
ypt2911
|
C
|
ypt2912
|
T
|
ypt2918
|
C
|
ypt2929
|
C
|
ypt2930
|
C
|
ypt3001
|
C
|
ypt3003
|
C
|
ypt3008
|
T
|
ypt3009
|
Y
|
ypt3010
|
C
|
ypt3012
|
T
|
ypt3016
|
C
|
ypt3028
|
Y
|
ypt3040
|
Y
|
ypt3045
|
T
|
ypt3047
|
T
|
ypt3050
|
T
|
ypt3052
|
C
|
ypt3138
|
T
|
ypt3140
|
T
|
ypt3141
|
C
|
ypt3142
|
T
|
ypt3143
|
T
|
ypt3145
|
T
|
ypt3146
|
C
|
ypt3150_L8_I023
|
C
|
ypt3159_L6_I035
|
C
|
ypt3160_L8_I024
|
T
|
ypt3179_L8_I025
|
T
|
ypt3180
|
Y
|
ypt3182_L1_I039
|
T
|
ypt3189_L1_I040
|
C
|
ypt3190_L8_I026
|
C
|
ypt3193_L1_I027
|
C
|
ypt3196_L2_I043
|
T
|
ypt3197_L1_I044
|
Y
|
ypt3205_L2_I047
|
T
|
ypt3211_L6_I052
|
T
|
ypt3220_L1_I031
|
T
|
ypt3221_L1_I032
|
T
|
ypt3239_L1_I035
|
C
|
ypt3245
|
T
|
ypt3257_L1_I056
|
C
|
ypt3258_L3_I001
|
Y
|
ypt3259_L6_I002
|
C
|
ypt3261_L7_I004
|
Y
|
ypt3262_L7_I005
|
T
|
ypt3269_L7_I006
|
T
|
ypt3271_L7_I008
|
T
|
ypt3274A_L7_I011
|
T
|
ypt55_L1_I033
|
T
|
ypt896_L2_I047
|
C
|
ypt899_L6_I051
|
T
|
ypt901_L1_I052
|
C
|
ypt903_L2_I054
|
C
|
ypt904_L4_I055
|
T
|
ypt907_L6_I002
|
T
|
ypt910_L3_I005
|
T
|
ypt911_L6_I006
|
T
|
ypt912
|
T
|
ypt917
|
Y
|
ypt918_L3_I007
|
T
|
ypt919_L4_I008
|
T
|
ypt920_L5_I010
|
T
|
ypt921_L8_I011
|
T
|
ypt923_L2_I051
|
T
|
ypt924_L3_I021
|
T
|
ypt926_L2_I023
|
C
|
ypt928
|
C
|
ypt930
|
C
|
ypt932
|
T
|
ypt933
|
T
|
ypt940_L4_I026
|
T
|
ypt941_L5_I027
|
T
|
ypt945_L4_I031
|
T
|
ypt953
|
C
|
ypt954
|
C
|
ypt955
|
T
|
ypt956x
|
C
|
ypt960
|
C
|
ypt961
|
T
|
ypt963
|
C
|
ypt964
|
T
|
ypt965
|
T
|
ypt966
|
C
|
ypt971
|
C
|
ypt974
|
T
|
ypt975_L8_I039
|
T
|
ypt976_L7_I040
|
T
|
ypt977_L2_I041
|
Y
|
ypt980_L3_I043
|
C
|
ypt981_L2_I044
|
T
|
ypt982_L4_I045
|
T
|
yptwj
|
T
|
147209
|
T
|
147830
|
T
|