ChickenSD
Detail information of ggaS0013004646643
1.General Information
SNP ID: |
ggaS0013004646643 |
Organism: |
Gallus gallus |
Individual: |
111S_L3_I047 |
2.Allele information
Platform: |
SOLEXA |
Method: |
sequence |
SNP Class: |
SNP |
Genotype: |
G |
3.Reference Map information
Chrom |
Position |
Reference |
111S_L3_I047
|
chrW
|
7422
|
A
|
G
|
4.Gene information
Var ID |
Gene ID |
Transcript ID |
Gene Symbol |
Variant Effect |
Biotype |
cDNA Position |
Allele Change |
Protein ID |
Protein Position |
Residue Change |
ggaS0013004646643 |
ENSGALG00000025736
|
|
- |
3_prime_UTR_variant |
|
|
=>
|
|
|
=>
|
5.Individual Genotype
Individual |
Genotype |
101S_L1_I028
|
A
|
103S
|
G
|
104S_L7_I029
|
A
|
106S_L6_I030
|
A
|
107S_L2_I031
|
A
|
108S_L6_I032
|
G
|
109S_L5_I033
|
G
|
10S_L1_I052
|
R
|
113S_L1_I036
|
G
|
116S_L6_I038
|
A
|
118S_L4_I040
|
A
|
119S_L3_I041
|
A
|
11S
|
A
|
120S_L1_I041
|
A
|
121S_L3_I042
|
A
|
123S_L4_I044
|
A
|
124S_L2_I048
|
G
|
125S_L3_I050
|
G
|
126S_L3_I051
|
A
|
127S_L2_I045
|
R
|
128S_L1_I042
|
G
|
130S_L4_I044
|
G
|
131S_L2_I045
|
A
|
132S_L2_I046
|
A
|
133S_L8_I046
|
A
|
134S_L2_I047
|
R
|
135S_L3_I048
|
A
|
13S_L7_I012
|
R
|
14S_L2_I021
|
A
|
15S_L6_I022
|
R
|
18833
|
R
|
19297
|
A
|
19912
|
A
|
19S_L4_I026
|
A
|
1S
|
A
|
21S_L6_I028
|
A
|
22S_L6_I029
|
A
|
23S_L2_I030
|
G
|
25S_L3_I032
|
G
|
27S_L4_I034
|
A
|
28S_L4_I035
|
A
|
29S_L3_I036
|
A
|
2S
|
G
|
30S_L2_I037
|
G
|
31S_L3_I038
|
G
|
32S_L1_I039
|
G
|
35S_L5_I041
|
G
|
39S_L6_I053
|
G
|
3S_L4_I003
|
A
|
40S_L2_I054
|
A
|
41S_L5_I045
|
A
|
43S
|
G
|
45S_L2_I002
|
R
|
49S_L1_I005
|
R
|
4S_L4_I004
|
A
|
50S_L1_I047
|
A
|
51S_L6_I048
|
A
|
55S_L1_I008
|
A
|
56S_L1_I010
|
A
|
57S_L3_I046
|
A
|
58S_L4_I051
|
A
|
5S
|
G
|
60S_L5_I053
|
G
|
61S_L8_I054
|
A
|
62S_L8_I055
|
A
|
63S_L5_I056
|
G
|
64S_L4_I001
|
R
|
65S_L5_I002
|
G
|
67S_L1_I011
|
G
|
68S_L3_I012
|
A
|
69S
|
R
|
6S
|
G
|
73S_L1_I025
|
G
|
75S_L3_I027
|
R
|
76S_L1_I028
|
A
|
77S_L4_I029
|
R
|
78S_L4_I030
|
A
|
7S_L4_I007
|
A
|
81S_L1_I005
|
G
|
84S_L5_I006
|
R
|
85S_L5_I007
|
R
|
86S_L5_I008
|
A
|
87S_L5_I010
|
A
|
89S_L6_I012
|
A
|
90S_L4_I021
|
A
|
91S_L4_I022
|
A
|
92S_L5_I023
|
A
|
93S_L7_I024
|
A
|
95S_L8_I025
|
R
|
96S_L4_I026
|
A
|
97S_L8_I027
|
A
|
98S_L3_I034
|
G
|
99S_L2_I035
|
A
|
9S
|
R
|
A1
|
G
|
A12
|
G
|
A14
|
G
|
A3
|
G
|
A8
|
G
|
BKL2
|
G
|
India1
|
A
|
India17
|
A
|
India19
|
A
|
India21
|
G
|
India25
|
A
|
India27
|
G
|
India29
|
A
|
India31
|
A
|
India33
|
A
|
India35
|
A
|
India37
|
A
|
India41
|
G
|
India43
|
G
|
India45
|
G
|
India47
|
G
|
India5
|
A
|
India51
|
A
|
India55
|
A
|
India57
|
G
|
India59
|
R
|
India61
|
G
|
India7
|
R
|
India9
|
A
|
L2
|
R
|
N1
|
A
|
N11
|
G
|
N13
|
G
|
N3
|
A
|
N7
|
G
|
N8
|
G
|
S-f1_L4_I106
|
A
|
S-f2_I107
|
A
|
S-f3_I108
|
R
|
S-f4_L4_I109
|
G
|
S-m1_I101
|
G
|
S-m2_I102
|
G
|
S-m3_I103
|
G
|
S-m5_I105
|
G
|
S6
|
A
|
SAMN02486158
|
A
|
SAMN02486159
|
A
|
SAMN02486160
|
R
|
SAMN02486161
|
A
|
SAMN02486165
|
A
|
SAMN02486166
|
A
|
SAMN02486167
|
A
|
Silkia
|
A
|
T2
|
A
|
T3
|
R
|
T5
|
A
|
TD12
|
G
|
TD15
|
A
|
TD22
|
G
|
TD27
|
G
|
TD9
|
G
|
Tibet
|
R
|
Xcelris_112
|
G
|
Xcelris_113
|
G
|
Xcelris_11B
|
G
|
Xcelris_12
|
A
|
Xcelris_127
|
G
|
Xcelris_129
|
G
|
Xcelris_13
|
A
|
Xcelris_137
|
A
|
Xcelris_14
|
A
|
Xcelris_141
|
A
|
Xcelris_14B
|
A
|
Xcelris_175
|
A
|
Xcelris_1B
|
A
|
Xcelris_219
|
R
|
Xcelris_221
|
G
|
Xcelris_222
|
G
|
Xcelris_224
|
G
|
Xcelris_226
|
G
|
Xcelris_276
|
A
|
Xcelris_2A
|
R
|
Xcelris_332
|
A
|
Xcelris_335
|
A
|
Xcelris_340
|
G
|
Xcelris_377
|
R
|
Xcelris_379
|
A
|
Xcelris_380
|
A
|
Xcelris_385
|
A
|
Xcelris_392
|
G
|
Xcelris_394
|
A
|
Xcelris_44
|
A
|
Xcelris_4B
|
G
|
Xcelris_6A
|
G
|
Xcelris_7
|
A
|
Xcelris_77
|
A
|
Xcelris_8
|
A
|
Xcelris_84
|
A
|
Xcelris_8A
|
G
|
Xcelris_90
|
A
|
Xcelris_MT-134
|
A
|
Xcelris_MT-18
|
A
|
Xcelris_MT-6
|
G
|
Xcelris_MT-99
|
A
|
Y1-f1_L5_I119
|
A
|
Y1-f2_L6_I121
|
R
|
Y1-f3_L7_I101
|
A
|
Y1-m2_L4_I122
|
A
|
Y1-m3_L7_I123
|
G
|
YPt565
|
A
|
YPt604
|
A
|
YPt609
|
G
|
YPt641
|
A
|
YPt648
|
A
|
You3_L7_I1000005
|
A
|
Ypt566
|
A
|
Ypt567
|
A
|
Ypt570
|
A
|
Ypt574
|
A
|
Ypt575
|
R
|
Ypt576
|
A
|
Ypt577
|
R
|
Ypt580
|
A
|
Ypt582
|
A
|
Ypt583
|
A
|
Ypt584
|
G
|
Ypt588
|
A
|
Ypt591
|
G
|
Ypt599
|
G
|
Ypt603
|
G
|
Ypt606
|
R
|
Ypt622
|
A
|
Ypt623
|
A
|
Ypt624
|
A
|
Ypt626
|
G
|
Ypt638
|
A
|
Ypt640
|
G
|
Ypt642
|
G
|
Ypt643
|
R
|
Ypt646
|
A
|
Yt516
|
A
|
Yt517
|
A
|
Yt518
|
A
|
Yt519
|
R
|
Yt520
|
G
|
Yt521
|
R
|
Yt522
|
G
|
Yt523
|
R
|
Yt524
|
A
|
Yt525
|
R
|
Yt526
|
A
|
Yt527
|
A
|
Yt528
|
A
|
Yt529
|
A
|
Yt530
|
A
|
Yt536
|
A
|
Yt538
|
A
|
Yt539
|
A
|
Yt540
|
A
|
ZJ1
|
A
|
ZJ2
|
A
|
ZJ4
|
A
|
india3
|
A
|
india49
|
A
|
production
|
A
|
ypt171_L2_I021
|
R
|
ypt173_L2_I022
|
G
|
ypt175_L2_I023
|
G
|
ypt2041_L6_I002
|
A
|
ypt2043_L1_I037
|
A
|
ypt2051_L3_I003
|
R
|
ypt2069_L6_I006
|
R
|
ypt2071_L1_I038
|
A
|
ypt2082
|
G
|
ypt2087
|
A
|
ypt2091
|
A
|
ypt2095
|
R
|
ypt2100
|
R
|
ypt2101
|
A
|
ypt2102
|
G
|
ypt2103
|
A
|
ypt2106
|
G
|
ypt2107
|
A
|
ypt2110
|
G
|
ypt2111
|
A
|
ypt2112
|
R
|
ypt2114
|
A
|
ypt2115
|
G
|
ypt2116
|
A
|
ypt2117
|
A
|
ypt2119
|
R
|
ypt2121
|
A
|
ypt2122
|
G
|
ypt2124_L4_I052
|
G
|
ypt2126_L3_I053
|
R
|
ypt2128_L6_I054
|
G
|
ypt2144_L6_I055
|
A
|
ypt2145_L6_I056
|
G
|
ypt2146_L6_I001
|
A
|
ypt2163
|
A
|
ypt2164
|
R
|
ypt2165
|
R
|
ypt2166
|
R
|
ypt2167
|
A
|
ypt2168
|
A
|
ypt2170
|
G
|
ypt2173
|
A
|
ypt2174
|
A
|
ypt2175
|
G
|
ypt2176
|
A
|
ypt217_L2_I024
|
R
|
ypt2184
|
G
|
ypt2185
|
A
|
ypt2186
|
R
|
ypt2187
|
R
|
ypt2189
|
G
|
ypt2190
|
R
|
ypt2191
|
A
|
ypt2200
|
A
|
ypt2205
|
G
|
ypt2209
|
A
|
ypt220_L2_I026
|
G
|
ypt2214
|
A
|
ypt2215
|
A
|
ypt2216
|
A
|
ypt2217
|
A
|
ypt2219
|
A
|
ypt2220
|
A
|
ypt2222
|
G
|
ypt222_L3_I027
|
A
|
ypt2438
|
A
|
ypt2439
|
A
|
ypt2440
|
G
|
ypt2441
|
G
|
ypt2442
|
R
|
ypt2444
|
A
|
ypt2446
|
G
|
ypt2448
|
A
|
ypt2454
|
A
|
ypt2459
|
A
|
ypt2468
|
A
|
ypt2496
|
A
|
ypt2497
|
A
|
ypt2499
|
A
|
ypt2500
|
G
|
ypt2503
|
G
|
ypt2504
|
A
|
ypt2507
|
R
|
ypt2512
|
G
|
ypt2523
|
G
|
ypt2534
|
A
|
ypt2541
|
A
|
ypt2543
|
A
|
ypt2544
|
R
|
ypt2545
|
A
|
ypt2546
|
R
|
ypt2547
|
A
|
ypt2552
|
R
|
ypt2569
|
R
|
ypt2571
|
A
|
ypt2572
|
A
|
ypt2573
|
A
|
ypt2574
|
A
|
ypt258_L3_I028
|
A
|
ypt2598
|
A
|
ypt259_L2_I029
|
G
|
ypt2606
|
G
|
ypt2615
|
A
|
ypt2622
|
A
|
ypt2623
|
A
|
ypt2624
|
G
|
ypt2625
|
G
|
ypt2627
|
G
|
ypt2628
|
G
|
ypt262_L3_I030
|
G
|
ypt263_L3_I031
|
G
|
ypt2640
|
A
|
ypt2641
|
A
|
ypt2643
|
A
|
ypt2646
|
G
|
ypt2650
|
R
|
ypt2658
|
R
|
ypt2661
|
A
|
ypt2664
|
A
|
ypt2665
|
A
|
ypt2672
|
A
|
ypt2673
|
A
|
ypt2678
|
A
|
ypt2706
|
A
|
ypt2724
|
G
|
ypt2729
|
G
|
ypt2733
|
A
|
ypt2739
|
A
|
ypt2740
|
G
|
ypt2745
|
R
|
ypt2746
|
G
|
ypt2761
|
G
|
ypt2765
|
A
|
ypt2766
|
R
|
ypt2775
|
G
|
ypt2783
|
G
|
ypt2785
|
R
|
ypt2786
|
A
|
ypt2787
|
R
|
ypt2788
|
A
|
ypt2790
|
A
|
ypt2792
|
G
|
ypt2808
|
R
|
ypt2810
|
R
|
ypt2812
|
A
|
ypt2813
|
A
|
ypt2815
|
A
|
ypt2816
|
A
|
ypt2817
|
A
|
ypt2819
|
A
|
ypt2821
|
A
|
ypt2822
|
R
|
ypt2823
|
A
|
ypt2824
|
A
|
ypt2825
|
G
|
ypt2826
|
A
|
ypt2827
|
R
|
ypt2828
|
G
|
ypt2832
|
G
|
ypt2842
|
G
|
ypt2843
|
G
|
ypt2849
|
G
|
ypt2859
|
G
|
ypt2892
|
A
|
ypt2902
|
A
|
ypt2909
|
A
|
ypt2910
|
G
|
ypt2912
|
A
|
ypt2918
|
G
|
ypt2929
|
A
|
ypt2930
|
A
|
ypt3001
|
A
|
ypt3002
|
A
|
ypt3003
|
A
|
ypt3005
|
G
|
ypt3006
|
G
|
ypt3007
|
G
|
ypt3008
|
G
|
ypt3009
|
A
|
ypt3010
|
A
|
ypt3011
|
A
|
ypt3012
|
G
|
ypt3016
|
R
|
ypt3017
|
G
|
ypt3028
|
R
|
ypt3038
|
A
|
ypt3040
|
R
|
ypt3041
|
A
|
ypt3042
|
G
|
ypt3043
|
G
|
ypt3045
|
A
|
ypt3047
|
G
|
ypt3050
|
G
|
ypt3051
|
A
|
ypt3052
|
A
|
ypt3061
|
R
|
ypt3069
|
G
|
ypt3072
|
G
|
ypt3133
|
G
|
ypt3134
|
G
|
ypt3136
|
G
|
ypt3137
|
A
|
ypt3140
|
A
|
ypt3141
|
A
|
ypt3142
|
R
|
ypt3143
|
A
|
ypt3149_L2_I034
|
A
|
ypt3150_L8_I023
|
A
|
ypt3159_L6_I035
|
A
|
ypt3160_L8_I024
|
A
|
ypt3162_L6_I036
|
A
|
ypt3179_L8_I025
|
R
|
ypt3180
|
A
|
ypt3182_L1_I039
|
G
|
ypt3189_L1_I040
|
A
|
ypt3190_L8_I026
|
G
|
ypt3191_L2_I041
|
G
|
ypt3196_L2_I043
|
G
|
ypt3197_L1_I044
|
R
|
ypt3211_L6_I052
|
G
|
ypt3212_L4_I028
|
G
|
ypt3219_L1_I030
|
G
|
ypt3220_L1_I031
|
A
|
ypt3222_L1_I033
|
G
|
ypt3225_L2_I053
|
G
|
ypt3228-7_L1_I034
|
A
|
ypt3229_L8_I045
|
A
|
ypt3239_L1_I035
|
A
|
ypt3240_L6_I054
|
A
|
ypt3247_L6_I051
|
A
|
ypt3258_L3_I001
|
A
|
ypt3261_L7_I004
|
A
|
ypt3262_L7_I005
|
R
|
ypt3269_L7_I006
|
G
|
ypt3270_L1_I007
|
G
|
ypt3271_L7_I008
|
G
|
ypt3272_L7_I010
|
G
|
ypt3276_L7_I021
|
A
|
ypt47_L2_I029
|
R
|
ypt55_L1_I033
|
A
|
ypt891
|
A
|
ypt898
|
G
|
ypt901_L1_I052
|
R
|
ypt903_L2_I054
|
A
|
ypt904_L4_I055
|
A
|
ypt909_L5_I004
|
A
|
ypt910_L3_I005
|
G
|
ypt911_L6_I006
|
A
|
ypt912
|
A
|
ypt915
|
G
|
ypt920_L5_I010
|
G
|
ypt922_L4_I012
|
A
|
ypt923_L2_I051
|
A
|
ypt924_L3_I021
|
A
|
ypt925_L2_I022
|
A
|
ypt926_L2_I023
|
G
|
ypt929
|
A
|
ypt932
|
A
|
ypt933
|
A
|
ypt937
|
G
|
ypt940_L4_I026
|
A
|
ypt941_L5_I027
|
A
|
ypt942_L7_I028
|
R
|
ypt943
|
A
|
ypt945_L4_I031
|
A
|
ypt946_L4_I032
|
G
|
ypt949_L3_I035
|
A
|
ypt951
|
A
|
ypt952
|
G
|
ypt955
|
A
|
ypt956x
|
A
|
ypt958
|
A
|
ypt959
|
A
|
ypt960
|
A
|
ypt963
|
A
|
ypt971
|
A
|
ypt972x
|
R
|
ypt973_L4_I037
|
A
|
ypt974
|
R
|
ypt977_L2_I041
|
A
|
ypt979_L6_I042
|
A
|
ypt980_L3_I043
|
A
|
ypt981_L2_I044
|
G
|
147209
|
A
|
Gallus_Sonneriatii_d
|
G
|