ChickenSD
Detail information of ggaS0013004646642
1.General Information
| SNP ID: |
ggaS0013004646642 |
| Organism: |
Gallus gallus |
| Individual: |
111S_L3_I047 |
2.Allele information
| Platform: |
SOLEXA |
| Method: |
sequence |
| SNP Class: |
SNP |
| Genotype: |
C |
3.Reference Map information
| Chrom |
Position |
Reference |
111S_L3_I047
|
| chrW
|
6147
|
G
|
C
|
4.Gene information
| Var ID |
Gene ID |
Transcript ID |
Gene Symbol |
Variant Effect |
Biotype |
cDNA Position |
Allele Change |
Protein ID |
Protein Position |
Residue Change |
| ggaS0013004646642 |
ENSGALG00000025736
|
|
- |
3_prime_UTR_variant |
|
|
=>
|
|
|
=>
|
5.Individual Genotype
| Individual |
Genotype |
|
101S_L1_I028
|
S
|
|
103S
|
S
|
|
107S_L2_I031
|
C
|
|
109S_L5_I033
|
S
|
|
10S_L1_I052
|
S
|
|
110S_L4_I034
|
G
|
|
113S_L1_I036
|
G
|
|
117S_L2_I039
|
S
|
|
118S_L4_I040
|
G
|
|
119S_L3_I041
|
S
|
|
11S
|
S
|
|
120S_L1_I041
|
G
|
|
121S_L3_I042
|
G
|
|
122S_L4_I043
|
G
|
|
123S_L4_I044
|
G
|
|
125S_L3_I050
|
S
|
|
126S_L3_I051
|
G
|
|
128S_L1_I042
|
G
|
|
129S_L3_I043
|
G
|
|
12S_L4_I011
|
G
|
|
130S_L4_I044
|
S
|
|
131S_L2_I045
|
G
|
|
132S_L2_I046
|
C
|
|
134S_L2_I047
|
G
|
|
135S_L3_I048
|
G
|
|
15S_L6_I022
|
G
|
|
18833
|
S
|
|
19912
|
C
|
|
1S
|
C
|
|
20736
|
C
|
|
21S_L6_I028
|
C
|
|
22S_L6_I029
|
C
|
|
23S_L2_I030
|
C
|
|
24S_L4_I031
|
C
|
|
25S_L3_I032
|
C
|
|
27S_L4_I034
|
C
|
|
29S_L3_I036
|
C
|
|
2S
|
C
|
|
30S_L2_I037
|
S
|
|
32S_L1_I039
|
S
|
|
39S_L6_I053
|
G
|
|
3S_L4_I003
|
C
|
|
40S_L2_I054
|
C
|
|
43S
|
C
|
|
45S_L2_I002
|
C
|
|
47S_L3_I046
|
G
|
|
48S_L1_I004
|
S
|
|
49S_L1_I005
|
S
|
|
4S_L4_I004
|
S
|
|
50S_L1_I047
|
S
|
|
51S_L6_I048
|
G
|
|
52S_L2_I050
|
G
|
|
54S_L2_I007
|
S
|
|
55S_L1_I008
|
G
|
|
56S_L1_I010
|
S
|
|
57S_L3_I046
|
C
|
|
5S
|
C
|
|
60S_L5_I053
|
G
|
|
61S_L8_I054
|
G
|
|
62S_L8_I055
|
G
|
|
63S_L5_I056
|
C
|
|
64S_L4_I001
|
G
|
|
65S_L5_I002
|
S
|
|
67S_L1_I011
|
S
|
|
68S_L3_I012
|
S
|
|
69S
|
S
|
|
6S
|
C
|
|
70S
|
G
|
|
73S_L1_I025
|
S
|
|
76S_L1_I028
|
G
|
|
77S_L4_I029
|
C
|
|
78S_L4_I030
|
C
|
|
7S_L4_I007
|
G
|
|
80S_L3_I004
|
S
|
|
82S
|
G
|
|
83S_L3_I033
|
G
|
|
84S_L5_I006
|
S
|
|
85S_L5_I007
|
G
|
|
86S_L5_I008
|
G
|
|
87S_L5_I010
|
G
|
|
88S_L4_I011
|
G
|
|
89S_L6_I012
|
G
|
|
90S_L4_I021
|
G
|
|
91S_L4_I022
|
G
|
|
92S_L5_I023
|
G
|
|
93S_L7_I024
|
G
|
|
95S_L8_I025
|
G
|
|
96S_L4_I026
|
G
|
|
97S_L8_I027
|
G
|
|
98S_L3_I034
|
S
|
|
99S_L2_I035
|
G
|
|
9S
|
G
|
|
A1
|
S
|
|
A10
|
S
|
|
A12
|
S
|
|
A8
|
S
|
|
BLO15
|
C
|
|
BYW5_L2_I010
|
C
|
|
GVF
|
C
|
|
India1
|
G
|
|
India13
|
S
|
|
India17
|
C
|
|
India19
|
S
|
|
India21
|
C
|
|
India23
|
S
|
|
India25
|
G
|
|
India27
|
S
|
|
India29
|
G
|
|
India31
|
C
|
|
India33
|
G
|
|
India35
|
S
|
|
India37
|
C
|
|
India41
|
G
|
|
India43
|
S
|
|
India45
|
S
|
|
India47
|
S
|
|
India57
|
C
|
|
India59
|
S
|
|
India61
|
G
|
|
India7
|
S
|
|
L2
|
G
|
|
N1
|
S
|
|
N11
|
S
|
|
N13
|
C
|
|
N18
|
G
|
|
N3
|
C
|
|
N5
|
S
|
|
N7
|
S
|
|
N8
|
S
|
|
S-f1_L4_I106
|
C
|
|
S-f2_I107
|
C
|
|
S-f4_L4_I109
|
S
|
|
S-m1_I101
|
S
|
|
S-m2_I102
|
S
|
|
S-m3_I103
|
S
|
|
S-m4_L2_I104
|
S
|
|
SAMN02486156
|
G
|
|
SAMN02486158
|
G
|
|
SAMN02486159
|
S
|
|
SAMN02486160
|
S
|
|
SAMN02486162
|
G
|
|
SAMN02486164
|
C
|
|
SAMN02486165
|
S
|
|
SAMN02486166
|
G
|
|
SAMN02486167
|
G
|
|
Silkia
|
C
|
|
T2
|
C
|
|
T3
|
C
|
|
T5
|
S
|
|
TD1
|
S
|
|
TD12
|
S
|
|
TD15
|
G
|
|
TD22
|
C
|
|
TD27
|
G
|
|
TD30
|
S
|
|
TD6
|
G
|
|
TD9
|
S
|
|
Tibet
|
G
|
|
Xcelris_10
|
G
|
|
Xcelris_104
|
G
|
|
Xcelris_105
|
G
|
|
Xcelris_112
|
G
|
|
Xcelris_12
|
G
|
|
Xcelris_120
|
G
|
|
Xcelris_128
|
C
|
|
Xcelris_137
|
C
|
|
Xcelris_14
|
C
|
|
Xcelris_143
|
C
|
|
Xcelris_144
|
S
|
|
Xcelris_175
|
C
|
|
Xcelris_176
|
G
|
|
Xcelris_1B
|
G
|
|
Xcelris_219
|
C
|
|
Xcelris_221
|
C
|
|
Xcelris_222
|
G
|
|
Xcelris_224
|
C
|
|
Xcelris_226
|
G
|
|
Xcelris_227
|
C
|
|
Xcelris_276
|
C
|
|
Xcelris_280
|
C
|
|
Xcelris_2A
|
G
|
|
Xcelris_331
|
S
|
|
Xcelris_335
|
C
|
|
Xcelris_336
|
C
|
|
Xcelris_339
|
G
|
|
Xcelris_341
|
G
|
|
Xcelris_36
|
G
|
|
Xcelris_378
|
G
|
|
Xcelris_380
|
G
|
|
Xcelris_382
|
S
|
|
Xcelris_384
|
C
|
|
Xcelris_392
|
G
|
|
Xcelris_44
|
C
|
|
Xcelris_5A
|
G
|
|
Xcelris_5B
|
S
|
|
Xcelris_7
|
C
|
|
Xcelris_77
|
G
|
|
Xcelris_8B
|
G
|
|
Xcelris_MT-134
|
G
|
|
Xcelris_MT-18
|
S
|
|
Xcelris_MT-46
|
G
|
|
Xcelris_MT-48
|
G
|
|
Xcelris_MT-6
|
S
|
|
Xcelris_MT-85
|
C
|
|
Y1-f1_L5_I119
|
S
|
|
Y1-f2_L6_I121
|
S
|
|
Y1-f3_L7_I101
|
C
|
|
Y1-m1_L6_I120
|
C
|
|
Y1-m2_L4_I122
|
C
|
|
YPt565
|
S
|
|
YPt601
|
G
|
|
YPt604
|
S
|
|
YPt610
|
S
|
|
YPt641
|
G
|
|
YPt648
|
G
|
|
You1
|
S
|
|
You3_L7_I1000005
|
S
|
|
Ypt566
|
C
|
|
Ypt567
|
S
|
|
Ypt568
|
S
|
|
Ypt569
|
C
|
|
Ypt570
|
C
|
|
Ypt572
|
C
|
|
Ypt574
|
C
|
|
Ypt575
|
G
|
|
Ypt576
|
C
|
|
Ypt577
|
C
|
|
Ypt578
|
C
|
|
Ypt579
|
C
|
|
Ypt580
|
S
|
|
Ypt583
|
C
|
|
Ypt584
|
C
|
|
Ypt585
|
S
|
|
Ypt588
|
C
|
|
Ypt591
|
G
|
|
Ypt594
|
G
|
|
Ypt595
|
G
|
|
Ypt598
|
C
|
|
Ypt599
|
G
|
|
Ypt602
|
G
|
|
Ypt603
|
G
|
|
Ypt606
|
S
|
|
Ypt622
|
S
|
|
Ypt623
|
G
|
|
Ypt624
|
C
|
|
Ypt626
|
G
|
|
Ypt638
|
S
|
|
Ypt640
|
S
|
|
Ypt643
|
G
|
|
Ypt646
|
G
|
|
Yt516
|
C
|
|
Yt518
|
S
|
|
Yt519
|
G
|
|
Yt520
|
S
|
|
Yt521
|
C
|
|
Yt522
|
C
|
|
Yt524
|
C
|
|
Yt525
|
S
|
|
Yt526
|
S
|
|
Yt528
|
S
|
|
Yt529
|
C
|
|
Yt531
|
G
|
|
Yt536
|
S
|
|
Yt538
|
S
|
|
Yt539
|
C
|
|
Yt540
|
C
|
|
ZJ1
|
G
|
|
ZJ3
|
S
|
|
ZJ4
|
G
|
|
india3
|
C
|
|
india49
|
G
|
|
production
|
G
|
|
yp914ypt
|
G
|
|
ypt169_L3_I011
|
C
|
|
ypt171_L2_I021
|
S
|
|
ypt173_L2_I022
|
G
|
|
ypt2041_L6_I002
|
C
|
|
ypt2043_L1_I037
|
G
|
|
ypt2051_L3_I003
|
C
|
|
ypt2069_L6_I006
|
C
|
|
ypt2071_L1_I038
|
G
|
|
ypt2091
|
G
|
|
ypt2092
|
C
|
|
ypt2100
|
S
|
|
ypt2101
|
G
|
|
ypt2103
|
G
|
|
ypt2108
|
G
|
|
ypt2111
|
G
|
|
ypt2112
|
S
|
|
ypt2114
|
S
|
|
ypt2115
|
G
|
|
ypt2116
|
S
|
|
ypt2117
|
C
|
|
ypt2118
|
G
|
|
ypt2119
|
S
|
|
ypt2120
|
S
|
|
ypt2121
|
G
|
|
ypt2122
|
S
|
|
ypt2124_L4_I052
|
S
|
|
ypt2126_L3_I053
|
G
|
|
ypt2127_L1_I036
|
C
|
|
ypt2128_L6_I054
|
S
|
|
ypt2145_L6_I056
|
S
|
|
ypt2146_L6_I001
|
G
|
|
ypt2163
|
S
|
|
ypt2164
|
G
|
|
ypt2165
|
G
|
|
ypt2166
|
G
|
|
ypt2167
|
G
|
|
ypt2168
|
G
|
|
ypt2169
|
G
|
|
ypt2172
|
S
|
|
ypt2173
|
S
|
|
ypt2175
|
G
|
|
ypt2177
|
S
|
|
ypt2178
|
C
|
|
ypt217_L2_I024
|
S
|
|
ypt2184
|
C
|
|
ypt2186
|
S
|
|
ypt2187
|
S
|
|
ypt2189
|
G
|
|
ypt2191
|
C
|
|
ypt219_L3_I025
|
S
|
|
ypt2205
|
S
|
|
ypt220_L2_I026
|
G
|
|
ypt2214
|
C
|
|
ypt2215
|
S
|
|
ypt2216
|
G
|
|
ypt2218
|
S
|
|
ypt2219
|
G
|
|
ypt2220
|
S
|
|
ypt2222
|
S
|
|
ypt2439
|
C
|
|
ypt2441
|
S
|
|
ypt2442
|
S
|
|
ypt2443
|
G
|
|
ypt2444
|
C
|
|
ypt2446
|
G
|
|
ypt2449
|
S
|
|
ypt2454
|
G
|
|
ypt2459
|
S
|
|
ypt2468
|
S
|
|
ypt2496
|
G
|
|
ypt2497
|
G
|
|
ypt2498
|
G
|
|
ypt2499
|
G
|
|
ypt2503
|
S
|
|
ypt2504
|
G
|
|
ypt2512
|
G
|
|
ypt2516
|
G
|
|
ypt2521
|
G
|
|
ypt2523
|
S
|
|
ypt2534
|
G
|
|
ypt2541
|
C
|
|
ypt2544
|
G
|
|
ypt2545
|
G
|
|
ypt2552
|
G
|
|
ypt2569
|
S
|
|
ypt2572
|
C
|
|
ypt2574
|
C
|
|
ypt2575
|
C
|
|
ypt258_L3_I028
|
C
|
|
ypt2598
|
C
|
|
ypt259_L2_I029
|
C
|
|
ypt2601
|
C
|
|
ypt2606
|
C
|
|
ypt2615
|
C
|
|
ypt2623
|
C
|
|
ypt2624
|
C
|
|
ypt2625
|
S
|
|
ypt2628
|
S
|
|
ypt263_L3_I031
|
G
|
|
ypt2640
|
C
|
|
ypt2641
|
C
|
|
ypt2646
|
C
|
|
ypt2650
|
C
|
|
ypt2656
|
G
|
|
ypt2657
|
S
|
|
ypt2658
|
S
|
|
ypt2661
|
S
|
|
ypt2664
|
S
|
|
ypt2665
|
G
|
|
ypt2669
|
G
|
|
ypt2671
|
S
|
|
ypt2672
|
G
|
|
ypt2673
|
S
|
|
ypt2678
|
C
|
|
ypt2724
|
C
|
|
ypt2729
|
G
|
|
ypt2733
|
G
|
|
ypt2739
|
G
|
|
ypt2740
|
C
|
|
ypt2745
|
G
|
|
ypt2746
|
S
|
|
ypt2761
|
S
|
|
ypt2765
|
S
|
|
ypt2766
|
S
|
|
ypt2775
|
C
|
|
ypt2780
|
G
|
|
ypt2783
|
S
|
|
ypt2786
|
G
|
|
ypt2787
|
C
|
|
ypt2788
|
C
|
|
ypt2790
|
G
|
|
ypt2791
|
S
|
|
ypt2799
|
G
|
|
ypt2800
|
G
|
|
ypt2808
|
S
|
|
ypt2810
|
G
|
|
ypt2812
|
G
|
|
ypt2813
|
G
|
|
ypt2814
|
G
|
|
ypt2815
|
G
|
|
ypt2816
|
G
|
|
ypt2817
|
G
|
|
ypt2819
|
G
|
|
ypt2821
|
G
|
|
ypt2822
|
G
|
|
ypt2823
|
G
|
|
ypt2824
|
G
|
|
ypt2825
|
S
|
|
ypt2826
|
G
|
|
ypt2827
|
G
|
|
ypt2828
|
S
|
|
ypt2831
|
S
|
|
ypt2832
|
S
|
|
ypt2849
|
S
|
|
ypt2870
|
C
|
|
ypt2890_L3_I040
|
C
|
|
ypt2891_L3_I041
|
C
|
|
ypt2892
|
G
|
|
ypt2894
|
S
|
|
ypt2902
|
C
|
|
ypt2909
|
S
|
|
ypt2910
|
C
|
|
ypt2911
|
S
|
|
ypt2912
|
G
|
|
ypt2918
|
S
|
|
ypt2929
|
G
|
|
ypt2930
|
C
|
|
ypt3001
|
G
|
|
ypt3002
|
S
|
|
ypt3003
|
C
|
|
ypt3005
|
G
|
|
ypt3006
|
S
|
|
ypt3007
|
S
|
|
ypt3008
|
S
|
|
ypt3012
|
C
|
|
ypt3016
|
S
|
|
ypt3017
|
G
|
|
ypt3028
|
S
|
|
ypt3040
|
G
|
|
ypt3041
|
S
|
|
ypt3042
|
S
|
|
ypt3043
|
C
|
|
ypt3044
|
G
|
|
ypt3045
|
C
|
|
ypt3046
|
S
|
|
ypt3047
|
S
|
|
ypt3050
|
S
|
|
ypt3051
|
C
|
|
ypt3052
|
C
|
|
ypt3069
|
S
|
|
ypt3072
|
S
|
|
ypt3133
|
S
|
|
ypt3134
|
S
|
|
ypt3135
|
S
|
|
ypt3138
|
G
|
|
ypt3140
|
G
|
|
ypt3141
|
S
|
|
ypt3142
|
S
|
|
ypt3144_L3_I039
|
G
|
|
ypt3146
|
C
|
|
ypt3149_L2_I034
|
S
|
|
ypt3150_L8_I023
|
G
|
|
ypt3159_L6_I035
|
G
|
|
ypt3160_L8_I024
|
C
|
|
ypt3162_L6_I036
|
C
|
|
ypt3179_L8_I025
|
C
|
|
ypt3180
|
S
|
|
ypt3181_L7_I038
|
S
|
|
ypt3182_L1_I039
|
S
|
|
ypt3189_L1_I040
|
G
|
|
ypt3190_L8_I026
|
C
|
|
ypt3191_L2_I041
|
G
|
|
ypt3193_L1_I027
|
S
|
|
ypt3195_L1_I042
|
G
|
|
ypt3196_L2_I043
|
S
|
|
ypt3197_L1_I044
|
G
|
|
ypt3198_L2_I045
|
G
|
|
ypt3205_L2_I047
|
G
|
|
ypt3206_L1_I048
|
G
|
|
ypt3211_L6_I052
|
G
|
|
ypt3220_L1_I031
|
G
|
|
ypt3221_L1_I032
|
G
|
|
ypt3224_L8_I043
|
C
|
|
ypt3229_L8_I045
|
C
|
|
ypt3239_L1_I035
|
C
|
|
ypt3243_L8_I047
|
C
|
|
ypt3245
|
S
|
|
ypt3258_L3_I001
|
C
|
|
ypt3259_L6_I002
|
G
|
|
ypt3261_L7_I004
|
G
|
|
ypt3262_L7_I005
|
C
|
|
ypt3269_L7_I006
|
C
|
|
ypt3270_L1_I007
|
G
|
|
ypt3271_L7_I008
|
C
|
|
ypt3272_L7_I010
|
G
|
|
ypt3274A_L7_I011
|
C
|
|
ypt3276_L7_I021
|
C
|
|
ypt3289_L8_I021
|
C
|
|
ypt47_L2_I029
|
G
|
|
ypt53_L2_I032
|
S
|
|
ypt891
|
C
|
|
ypt896_L2_I047
|
C
|
|
ypt897_L3_I048
|
G
|
|
ypt899_L6_I051
|
G
|
|
ypt900_L2_I050
|
G
|
|
ypt902_L1_I053
|
G
|
|
ypt904_L4_I055
|
G
|
|
ypt906_L3_I001
|
S
|
|
ypt908_L1_I003
|
C
|
|
ypt910_L3_I005
|
G
|
|
ypt912
|
C
|
|
ypt917
|
G
|
|
ypt918_L3_I007
|
S
|
|
ypt922_L4_I012
|
C
|
|
ypt923_L2_I051
|
G
|
|
ypt928
|
G
|
|
ypt932
|
G
|
|
ypt933
|
S
|
|
ypt935
|
G
|
|
ypt936
|
G
|
|
ypt937
|
S
|
|
ypt938x
|
C
|
|
ypt941_L5_I027
|
S
|
|
ypt942_L7_I028
|
S
|
|
ypt943
|
C
|
|
ypt944_L3_I030
|
C
|
|
ypt945_L4_I031
|
C
|
|
ypt949_L3_I035
|
S
|
|
ypt950_L5_I036
|
G
|
|
ypt951
|
S
|
|
ypt953
|
S
|
|
ypt955
|
G
|
|
ypt956x
|
G
|
|
ypt957
|
S
|
|
ypt958
|
S
|
|
ypt959
|
C
|
|
ypt960
|
S
|
|
ypt961
|
S
|
|
ypt962
|
C
|
|
ypt963
|
C
|
|
ypt965
|
C
|
|
ypt971
|
C
|
|
ypt972x
|
G
|
|
ypt973_L4_I037
|
C
|
|
ypt974
|
C
|
|
ypt975_L8_I039
|
C
|
|
ypt976_L7_I040
|
C
|
|
ypt977_L2_I041
|
S
|
|
ypt980_L3_I043
|
C
|
|
ypt981_L2_I044
|
C
|
|
ypt982_L4_I045
|
S
|
|
147209
|
C
|
|
Gallus_Sonneriatii_d
|
G
|
|
Ypt4880
|
G
|
