ChickenSD

ChickenSD / Individual SNP / ggaS0012000968456

Detail information of ggaS0012000968456

1.General Information

SNP ID: ggaS0012000968456
Organism: Gallus gallus
Individual: 110S_L4_I034

2.Allele information

Platform: SOLEXA
Method: sequence
SNP Class: SNP
Genotype: C

3.Reference Map information

Chrom Position Reference 110S_L4_I034
chr10 4395 T C

4.Gene information

Var ID Gene ID Transcript ID Gene Symbol Variant Effect Biotype cDNA Position Allele Change Protein ID Protein Position Residue Change
ggaS0012000968456 - intergenic_variant => =>

5.Individual Genotype

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Individual Genotype
100S Y
101S_L1_I028 Y
102S_L3_I037 Y
103S Y
104S_L7_I029 Y
105S_L3_I039 Y
106S_L6_I030 Y
107S_L2_I031 Y
108S_L6_I032 T
109S_L5_I033 Y
10S_L1_I052 C
111S_L3_I047 T
112S_L3_I035 Y
113S_L1_I036 T
114S_L3_I037 Y
116S_L6_I038 T
117S_L2_I039 Y
118S_L4_I040 Y
119S_L3_I041 Y
11S Y
120S_L1_I041 Y
121S_L3_I042 Y
122S_L4_I043 Y
123S_L4_I044 Y
124S_L2_I048 Y
125S_L3_I050 Y
126S_L3_I051 T
127S_L2_I045 Y
128S_L1_I042 Y
129S_L3_I043 Y
12S_L4_I011 Y
130S_L4_I044 Y
131S_L2_I045 Y
132S_L2_I046 Y
133S_L8_I046 Y
134S_L2_I047 Y
135S_L3_I048 T
13S_L7_I012 Y
14S_L2_I021 Y
15S_L6_I022 Y
16S_L5_I023 Y
17S_L3_I024 T
18833 Y
18S_L7_I025 Y
19297 T
19912 Y
19S_L4_I026 Y
1S T
20736 Y
20S_L7_I027 Y
21S_L6_I028 Y
22S_L6_I029 T
23S_L2_I030 Y
24S_L4_I031 Y
25S_L3_I032 C
26S Y
27S_L4_I034 T
28S_L4_I035 Y
29S_L3_I036 Y
2S Y
30S_L2_I037 Y
31S_L3_I038 T
32S_L1_I039 Y
33S T
35S_L5_I041 T
36S_L5_I042 Y
37S_L2_I043 Y
38S_L6_I044 Y
39S_L6_I053 Y
3S_L4_I003 Y
40S_L2_I054 Y
41S_L5_I045 Y
42S_L3_I055 Y
43S Y
44S_L4_I001 Y
45S_L2_I002 T
46S_L4_I003 Y
47S_L3_I046 Y
48S_L1_I004 Y
49S_L1_I005 Y
4S_L4_I004 Y
50S_L1_I047 T
51S_L6_I048 Y
53S_L2_I006 Y
54S_L2_I007 T
55S_L1_I008 Y
56S_L1_I010 C
57S_L3_I046 Y
58S_L4_I051 C
59S_L5_I052 C
5S C
60S_L5_I053 Y
61S_L8_I054 Y
62S_L8_I055 Y
63S_L5_I056 Y
64S_L4_I001 C
65S_L5_I002 Y
66S_L2_I003 Y
67S_L1_I011 Y
68S_L3_I012 Y
69S Y
70S C
71S_L3_I023 C
72S_L1_I024 Y
73S_L1_I025 T
74S_L4_I026 Y
75S_L3_I027 Y
76S_L1_I028 Y
77S_L4_I029 Y
78S_L4_I030 C
79S_L2_I031 C
7S_L4_I007 Y
80S_L3_I004 Y
81S_L1_I005 C
82S Y
83S_L3_I033 Y
84S_L5_I006 Y
85S_L5_I007 Y
86S_L5_I008 Y
87S_L5_I010 T
88S_L4_I011 Y
89S_L6_I012 T
90S_L4_I021 T
91S_L4_I022 C
92S_L5_I023 T
93S_L7_I024 T
95S_L8_I025 T
96S_L4_I026 Y
97S_L8_I027 Y
98S_L3_I034 Y
99S_L2_I035 Y
9S Y
A1 Y
A10 T
A12 T
A14 T
A3 T
A8 T
BKL2 C
BLB1_L2_I007 C
BLO1 C
BLO11 C
BLO15 C
BLO2 C
BLO3_L4_I022 C
BOJA2 C
BYW3_L3_I033 C
BYW5_L2_I010 C
GVF C
India1 Y
India11 Y
India13 Y
India15 T
India17 T
India19 Y
India21 Y
India23 Y
India25 Y
India27 Y
India29 Y
India31 T
India33 Y
India35 Y
India37 Y
India39 Y
India41 T
India43 Y
India45 C
India47 Y
India5 Y
India51 Y
India55 Y
India57 T
India59 T
India61 Y
India7 C
India9 Y
L2 T
N1 T
N11 Y
N13 Y
N18 T
N3 T
N5 Y
N7 Y
N8 Y
S-f1_L4_I106 T
S-f2_I107 Y
S-f3_I108 Y
S-f4_L4_I109 T
S-m1_I101 T
S-m2_I102 T
S-m3_I103 Y
S-m4_L2_I104 T
S-m5_I105 Y
S6 Y
SAMN02486156 Y
SAMN02486157 Y
SAMN02486158 T
SAMN02486159 T
SAMN02486160 Y
SAMN02486161 Y
SAMN02486162 T
SAMN02486163 T
SAMN02486164 Y
SAMN02486165 Y
SAMN02486166 C
SAMN02486167 Y
Silkia Y
T2 Y
T3 Y
T5 Y
TD1 C
TD12 Y
TD15 T
TD22 Y
TD27 C
TD30 Y
TD6 Y
TD9 T
Tibet Y
Xcelris_10 T
Xcelris_101 Y
Xcelris_104 Y
Xcelris_105 Y
Xcelris_10A Y
Xcelris_10B Y
Xcelris_112 Y
Xcelris_113 Y
Xcelris_114 Y
Xcelris_11B T
Xcelris_12 Y
Xcelris_120 C
Xcelris_127 Y
Xcelris_128 Y
Xcelris_129 Y
Xcelris_12A Y
Xcelris_13 Y
Xcelris_137 Y
Xcelris_13B C
Xcelris_14 Y
Xcelris_141 Y
Xcelris_142 Y
Xcelris_143 Y
Xcelris_144 Y
Xcelris_14A Y
Xcelris_14B Y
Xcelris_174 T
Xcelris_1A T
Xcelris_219 Y
Xcelris_221 T
Xcelris_222 C
Xcelris_224 Y
Xcelris_226 C
Xcelris_227 C
Xcelris_275 C
Xcelris_276 C
Xcelris_278 C
Xcelris_279 C
Xcelris_280 C
Xcelris_282 C
Xcelris_2A Y
Xcelris_2B Y
Xcelris_332 C
Xcelris_333 C
Xcelris_335 C
Xcelris_336 C
Xcelris_339 C
Xcelris_340 C
Xcelris_341 C
Xcelris_36 C
Xcelris_377 C
Xcelris_378 C
Xcelris_379 C
Xcelris_380 C
Xcelris_381 C
Xcelris_382 Y
Xcelris_383 C
Xcelris_384 C
Xcelris_385 C
Xcelris_392 Y
Xcelris_394 Y
Xcelris_44 C
Xcelris_4A T
Xcelris_4B T
Xcelris_5 C
Xcelris_5B C
Xcelris_67 Y
Xcelris_6A T
Xcelris_7 C
Xcelris_77 Y
Xcelris_84 Y
Xcelris_8B Y
Xcelris_90 C
Xcelris_97 T
Xcelris_98 C
Xcelris_MT-134 Y
Xcelris_MT-38 C
Xcelris_MT-46 C
Xcelris_MT-48 C
Xcelris_MT-6 Y
Xcelris_MT-85 Y
Xcelris_MT-9 T
Xcelris_MT-99 T
Y1-f1_L5_I119 Y
Y1-f2_L6_I121 Y
Y1-f3_L7_I101 Y
Y1-m1_L6_I120 Y
Y1-m2_L4_I122 Y
Y1-m3_L7_I123 Y
Y1-m4_I124 Y
Y1-m5_L7_I102 Y
YPt565 C
YPt601 Y
YPt604 T
YPt609 Y
YPt610 T
YPt637 Y
YPt641 Y
YPt648 T
You1 Y
You3_L7_I1000005 Y
Ypt566 C
Ypt567 Y
Ypt568 T
Ypt569 T
Ypt570 T
Ypt571 T
Ypt572 Y
Ypt573 Y
Ypt574 T
Ypt575 Y
Ypt576 C
Ypt577 Y
Ypt578 Y
Ypt579 Y
Ypt580 Y
Ypt581 Y
Ypt582 Y
Ypt583 Y
Ypt584 Y
Ypt585 Y
Ypt586 Y
Ypt587 Y
Ypt588 Y
Ypt589 Y
Ypt590 Y
Ypt591 Y
Ypt592 T
Ypt593 Y
Ypt594 Y
Ypt595 Y
Ypt596 Y
Ypt597 Y
Ypt598 Y
Ypt599 Y
Ypt600 Y
Ypt602 Y
Ypt603 Y
Ypt606 T
Ypt607 T
Ypt608 Y
Ypt622 T
Ypt623 Y
Ypt624 Y
Ypt626 Y
Ypt638 T
Ypt640 Y
Ypt642 T
Ypt643 T
Ypt645 T
Ypt646 T
Yt516 T
Yt517 T
Yt518 Y
Yt519 Y
Yt520 Y
Yt521 Y
Yt522 Y
Yt523 Y
Yt524 T
Yt525 T
Yt526 T
Yt527 Y
Yt528 Y
Yt529 Y
Yt530 Y
Yt531 Y
Yt536 Y
Yt538 Y
Yt539 Y
Yt540 T
ZJ1 Y
ZJ2 Y
ZJ3 Y
ZJ4 Y
india3 Y
india49 C
production Y
yp914ypt Y
ypt169_L3_I011 Y
ypt170_L2_I012 Y
ypt171_L2_I021 Y
ypt173_L2_I022 T
ypt175_L2_I023 Y
ypt2041_L6_I002 Y
ypt2043_L1_I037 Y
ypt2051_L3_I003 Y
ypt2053_L6_I004 Y
ypt2063_L6_I005 Y
ypt2069_L6_I006 Y
ypt2071_L1_I038 Y
ypt2082 Y
ypt2086 C
ypt2087 C
ypt2091 C
ypt2092 Y
ypt2093 Y
ypt2095 Y
ypt2098 C
ypt2100 Y
ypt2101 C
ypt2102 Y
ypt2103 Y
ypt2105 T
ypt2106 C
ypt2107 T
ypt2108 T
ypt2109 Y
ypt2110 Y
ypt2111 Y
ypt2112 T
ypt2114 T
ypt2115 Y
ypt2116 T
ypt2117 T
ypt2118 T
ypt2119 Y
ypt2120 T
ypt2121 Y
ypt2122 C
ypt2124_L4_I052 C
ypt2126_L3_I053 Y
ypt2127_L1_I036 Y
ypt2128_L6_I054 Y
ypt2144_L6_I055 Y
ypt2145_L6_I056 Y
ypt2146_L6_I001 Y
ypt2163 T
ypt2164 Y
ypt2165 T
ypt2166 T
ypt2167 T
ypt2168 T
ypt2169 Y
ypt2170 Y
ypt2171 Y
ypt2172 Y
ypt2173 C
ypt2174 Y
ypt2175 Y
ypt2176 Y
ypt2177 T
ypt2178 Y
ypt217_L2_I024 Y
ypt2184 Y
ypt2185 Y
ypt2186 Y
ypt2187 C
ypt2189 Y
ypt2190 Y
ypt2191 Y
ypt219_L3_I025 Y
ypt2200 Y
ypt2201 Y
ypt2205 C
ypt2209 Y
ypt220_L2_I026 T
ypt2214 C
ypt2215 Y
ypt2216 Y
ypt2217 Y
ypt2218 Y
ypt2219 Y
ypt221_L3_I042 Y
ypt2220 Y
ypt2221 Y
ypt2222 Y
ypt222_L3_I027 Y
ypt2437 Y
ypt2438 Y
ypt2439 Y
ypt2440 T
ypt2441 Y
ypt2442 C
ypt2443 Y
ypt2444 T
ypt2445 Y
ypt2446 T
ypt2447 Y
ypt2448 T
ypt2449 Y
ypt2454 Y
ypt2459 Y
ypt2468 Y
ypt2496 Y
ypt2497 Y
ypt2498 Y
ypt2499 Y
ypt2500 Y
ypt2503 Y
ypt2504 T
ypt2507 Y
ypt2512 Y
ypt2516 Y
ypt2521 Y
ypt2523 Y
ypt2534 Y
ypt2541 Y
ypt2543 Y
ypt2544 Y
ypt2545 T
ypt2546 Y
ypt2547 Y
ypt2552 Y
ypt2562 Y
ypt2563 T
ypt2569 Y
ypt2570 Y
ypt2571 T
ypt2572 Y
ypt2573 Y
ypt2574 T
ypt2575 Y
ypt2579 Y
ypt258_L3_I028 Y
ypt2598 T
ypt259_L2_I029 Y
ypt2601 Y
ypt2606 C
ypt2608 Y
ypt2615 T
ypt2622 Y
ypt2623 Y
ypt2624 Y
ypt2625 Y
ypt2627 T
ypt2628 Y
ypt2629 T
ypt262_L3_I030 T
ypt2630 Y
ypt2636 Y
ypt2638 Y
ypt263_L3_I031 Y
ypt2640 Y
ypt2641 Y
ypt2643 Y
ypt2644 Y
ypt2646 Y
ypt264_L3_I032 Y
ypt2650 T
ypt2653 Y
ypt2656 Y
ypt2657 Y
ypt2658 Y
ypt2661 Y
ypt2664 T
ypt2665 Y
ypt2670 Y
ypt2671 T
ypt2672 Y
ypt2673 C
ypt2678 Y
ypt2706 C
ypt2722 C
ypt2724 C
ypt2729 Y
ypt2733 Y
ypt2739 Y
ypt2740 Y
ypt2745 C
ypt2746 Y
ypt2760 Y
ypt2761 Y
ypt2765 Y
ypt2766 Y
ypt2780 C
ypt2781 C
ypt2782 Y
ypt2783 T
ypt2784 Y
ypt2785 Y
ypt2786 Y
ypt2787 Y
ypt2788 C
ypt2789 C
ypt2790 Y
ypt2791 Y
ypt2792 C
ypt2799 Y
ypt2800 Y
ypt2808 Y
ypt2810 Y
ypt2812 Y
ypt2813 T
ypt2814 Y
ypt2815 T
ypt2816 T
ypt2817 C
ypt2819 T
ypt2821 T
ypt2822 T
ypt2823 Y
ypt2824 Y
ypt2825 Y
ypt2826 Y
ypt2827 Y
ypt2828 Y
ypt2831 T
ypt2832 T
ypt2842 T
ypt2843 T
ypt2849 T
ypt2859 C
ypt2860 C
ypt2862 C
ypt2863 C
ypt2870 C
ypt2871 C
ypt2887 C
ypt2888 C
ypt2889 C
ypt2890_L3_I040 C
ypt2891_L3_I041 C
ypt2892 Y
ypt2893_L3_I025 Y
ypt2894 Y
ypt2895_L3_I026 T
ypt2902 T
ypt2909 Y
ypt2910 Y
ypt2911 Y
ypt2912 Y
ypt2918 Y
ypt2929 Y
ypt2930 T
ypt3001 Y
ypt3002 Y
ypt3003 Y
ypt3004 Y
ypt3005 T
ypt3006 Y
ypt3007 C
ypt3008 Y
ypt3009 Y
ypt3010 Y
ypt3011 Y
ypt3012 T
ypt3016 T
ypt3017 Y
ypt3028 C
ypt3038 Y
ypt3040 T
ypt3041 T
ypt3042 Y
ypt3043 Y
ypt3044 T
ypt3045 T
ypt3046 Y
ypt3047 Y
ypt3050 Y
ypt3051 T
ypt3052 Y
ypt3061 Y
ypt3069 T
ypt3072 T
ypt3133 T
ypt3134 Y
ypt3135 T
ypt3136 Y
ypt3137 Y
ypt3138 Y
ypt3139 Y
ypt3140 T
ypt3141 T
ypt3142 Y
ypt3143 Y
ypt3144_L3_I039 T
ypt3145 T
ypt3146 Y
ypt3149_L2_I034 Y
ypt3150_L8_I023 C
ypt3159_L6_I035 Y
ypt3160_L8_I024 Y
ypt3162_L6_I036 Y
ypt3179_L8_I025 Y
ypt3180 Y
ypt3181_L7_I038 C
ypt3182_L1_I039 Y
ypt3189_L1_I040 T
ypt3190_L8_I026 Y
ypt3191_L2_I041 C
ypt3193_L1_I027 Y
ypt3195_L1_I042 Y
ypt3196_L2_I043 T
ypt3197_L1_I044 Y
ypt3198_L2_I045 T
ypt3204_L7_I046 Y
ypt3205_L2_I047 Y
ypt3206_L1_I048 Y
ypt3207_L6_I050 Y
ypt3210_L6_I051 Y
ypt3211_L6_I052 Y
ypt3212_L4_I028 Y
ypt3213_L8_I029 Y
ypt3219_L1_I030 T
ypt3220_L1_I031 Y
ypt3221_L1_I032 C
ypt3222_L1_I033 Y
ypt3224_L8_I043 Y
ypt3225_L2_I053 Y
ypt3226_L3_I044 Y
ypt3228-7_L1_I034 Y
ypt3229_L8_I045 Y
ypt3238_L3_I046 C
ypt3239_L1_I035 Y
ypt3240_L6_I054 Y
ypt3241_L6_I055 Y
ypt3243_L8_I047 Y
ypt3245 Y
ypt3246_L6_I050 Y
ypt3247_L6_I051 Y
ypt3257_L1_I056 T
ypt3260_L6_I003 T
ypt3262_L7_I005 Y
ypt3269_L7_I006 T
ypt3270_L1_I007 C
ypt3271_L7_I008 Y
ypt3272_L7_I010 C
ypt3274A_L7_I011 C
ypt3275_L1_I012 C
ypt3276_L7_I021 C
ypt3277_L6_I027 C
ypt3278_L3_I028 C
ypt3289_L8_I021 C
ypt4001 C
ypt47_L2_I029 Y
ypt50_L2_I030 Y
ypt55_L1_I033 C
ypt890 C
ypt891 C
ypt896_L2_I047 C
ypt897_L3_I048 C
ypt898 C
ypt899_L6_I051 C
ypt900_L2_I050 C
ypt901_L1_I052 C
ypt902_L1_I053 C
ypt903_L2_I054 C
ypt904_L4_I055 C
ypt905_L6_I056 C
ypt906_L3_I001 Y
ypt907_L6_I002 C
ypt908_L1_I003 C
ypt909_L5_I004 C
ypt910_L3_I005 Y
ypt911_L6_I006 Y
ypt912 C
ypt913 T
ypt915 T
ypt916 C
ypt918_L3_I007 C
ypt919_L4_I008 Y
ypt920_L5_I010 T
ypt922_L4_I012 C
ypt923_L2_I051 Y
ypt925_L2_I022 Y
ypt928 Y
ypt929 C
ypt930 T
ypt931 C
ypt932 Y
ypt934x C
ypt935 C
ypt936 C
ypt937 Y
ypt938x Y
ypt939_L5_I025 T
ypt940_L4_I026 T
ypt941_L5_I027 Y
ypt942_L7_I028 Y
ypt943 Y
ypt944_L3_I030 Y
ypt945_L4_I031 Y
ypt946_L4_I032 Y
ypt947_L5_I033 Y
ypt948_L2_I034 Y
ypt949_L3_I035 C
ypt950_L5_I036 Y
ypt951 T
ypt952 Y
ypt953 T
ypt954 Y
ypt955 Y
ypt956x T
ypt957 Y
ypt958 Y
ypt959 C
ypt960 Y
ypt961 T
ypt962 T
ypt963 T
ypt964 T
ypt965 Y
ypt966 Y
ypt971 T
ypt972x Y
ypt973_L4_I037 C
ypt974 Y
ypt975_L8_I039 Y
ypt976_L7_I040 Y
ypt977_L2_I041 Y
ypt978_L2_I052 Y
ypt979_L6_I042 Y
ypt980_L3_I043 Y
ypt981_L2_I044 Y
ypt982_L4_I045 Y
ypt984 Y
yptwj Y
147209 Y
147830 Y
GLF_denovo Y
Gallus_Sonneriatii_d Y
Ypt4000 T
Ypt4879 Y
Ypt4880 Y