ChickenSD
Detail information of ggaS0012000968450
1.General Information
| SNP ID: |
ggaS0012000968450 |
| Organism: |
Gallus gallus |
| Individual: |
110S_L4_I034 |
2.Allele information
| Platform: |
SOLEXA |
| Method: |
sequence |
| SNP Class: |
SNP |
| Genotype: |
C |
3.Reference Map information
| Chrom |
Position |
Reference |
110S_L4_I034
|
| chr10
|
1811
|
G
|
C
|
4.Gene information
| Var ID |
Gene ID |
Transcript ID |
Gene Symbol |
Variant Effect |
Biotype |
cDNA Position |
Allele Change |
Protein ID |
Protein Position |
Residue Change |
| ggaS0012000968450 |
-
|
|
|
intergenic_variant |
|
|
=>
|
|
|
=>
|
5.Individual Genotype
| Individual |
Genotype |
|
100S
|
C
|
|
101S_L1_I028
|
C
|
|
105S_L3_I039
|
G
|
|
106S_L6_I030
|
G
|
|
107S_L2_I031
|
C
|
|
111S_L3_I047
|
C
|
|
122S_L4_I043
|
G
|
|
123S_L4_I044
|
C
|
|
124S_L2_I048
|
G
|
|
125S_L3_I050
|
C
|
|
126S_L3_I051
|
G
|
|
127S_L2_I045
|
G
|
|
129S_L3_I043
|
G
|
|
130S_L4_I044
|
C
|
|
133S_L8_I046
|
G
|
|
135S_L3_I048
|
S
|
|
14S_L2_I021
|
G
|
|
15S_L6_I022
|
G
|
|
18S_L7_I025
|
C
|
|
20736
|
S
|
|
25S_L3_I032
|
S
|
|
26S
|
G
|
|
28S_L4_I035
|
G
|
|
29S_L3_I036
|
G
|
|
2S
|
G
|
|
31S_L3_I038
|
S
|
|
32S_L1_I039
|
G
|
|
39S_L6_I053
|
G
|
|
41S_L5_I045
|
G
|
|
42S_L3_I055
|
G
|
|
43S
|
C
|
|
45S_L2_I002
|
G
|
|
47S_L3_I046
|
G
|
|
48S_L1_I004
|
S
|
|
4S_L4_I004
|
G
|
|
50S_L1_I047
|
C
|
|
53S_L2_I006
|
C
|
|
55S_L1_I008
|
G
|
|
57S_L3_I046
|
G
|
|
58S_L4_I051
|
C
|
|
59S_L5_I052
|
G
|
|
5S
|
G
|
|
60S_L5_I053
|
G
|
|
69S
|
C
|
|
6S
|
G
|
|
70S
|
G
|
|
72S_L1_I024
|
C
|
|
73S_L1_I025
|
G
|
|
74S_L4_I026
|
G
|
|
76S_L1_I028
|
G
|
|
78S_L4_I030
|
S
|
|
79S_L2_I031
|
G
|
|
7S_L4_I007
|
G
|
|
80S_L3_I004
|
C
|
|
86S_L5_I008
|
C
|
|
91S_L4_I022
|
G
|
|
98S_L3_I034
|
G
|
|
99S_L2_I035
|
C
|
|
9S
|
G
|
|
A10
|
G
|
|
A12
|
G
|
|
A14
|
G
|
|
A3
|
G
|
|
A8
|
G
|
|
India1
|
G
|
|
India15
|
G
|
|
India19
|
S
|
|
India23
|
G
|
|
India27
|
G
|
|
India31
|
G
|
|
India35
|
G
|
|
India37
|
G
|
|
India39
|
G
|
|
India43
|
G
|
|
India5
|
G
|
|
India51
|
G
|
|
India57
|
C
|
|
India59
|
G
|
|
India61
|
G
|
|
India7
|
G
|
|
N1
|
G
|
|
N11
|
G
|
|
N13
|
C
|
|
N18
|
S
|
|
N3
|
G
|
|
N8
|
C
|
|
S-f1_L4_I106
|
G
|
|
S-f2_I107
|
G
|
|
S-m3_I103
|
C
|
|
S-m4_L2_I104
|
G
|
|
S-m5_I105
|
G
|
|
S6
|
C
|
|
SAMN02486159
|
G
|
|
SAMN02486166
|
G
|
|
SAMN02486167
|
S
|
|
Silkia
|
G
|
|
T3
|
C
|
|
TD1
|
G
|
|
TD12
|
G
|
|
TD15
|
G
|
|
TD22
|
C
|
|
TD27
|
G
|
|
TD30
|
C
|
|
TD9
|
C
|
|
Tibet
|
S
|
|
Xcelris_104
|
C
|
|
Xcelris_10B
|
G
|
|
Xcelris_112
|
C
|
|
Xcelris_113
|
S
|
|
Xcelris_114
|
G
|
|
Xcelris_11B
|
C
|
|
Xcelris_120
|
G
|
|
Xcelris_127
|
G
|
|
Xcelris_13
|
C
|
|
Xcelris_14
|
G
|
|
Xcelris_14A
|
G
|
|
Xcelris_1A
|
G
|
|
Xcelris_219
|
S
|
|
Xcelris_221
|
C
|
|
Xcelris_226
|
S
|
|
Xcelris_2A
|
G
|
|
Xcelris_2B
|
C
|
|
Xcelris_336
|
C
|
|
Xcelris_339
|
G
|
|
Xcelris_379
|
C
|
|
Xcelris_383
|
C
|
|
Xcelris_385
|
C
|
|
Xcelris_MT-134
|
G
|
|
Y1-f1_L5_I119
|
G
|
|
Y1-f2_L6_I121
|
G
|
|
Y1-m1_L6_I120
|
G
|
|
Y1-m5_L7_I102
|
G
|
|
YPt610
|
C
|
|
You3_L7_I1000005
|
G
|
|
Ypt568
|
G
|
|
Ypt570
|
G
|
|
Ypt599
|
C
|
|
Ypt600
|
C
|
|
Ypt606
|
G
|
|
Ypt624
|
G
|
|
Yt516
|
G
|
|
Yt517
|
C
|
|
Yt519
|
G
|
|
Yt521
|
C
|
|
Yt523
|
G
|
|
Yt524
|
G
|
|
Yt526
|
G
|
|
Yt527
|
G
|
|
Yt529
|
S
|
|
Yt539
|
C
|
|
Yt540
|
C
|
|
production
|
S
|
|
ypt2041_L6_I002
|
G
|
|
ypt2051_L3_I003
|
C
|
|
ypt2063_L6_I005
|
C
|
|
ypt2082
|
G
|
|
ypt2086
|
G
|
|
ypt2087
|
G
|
|
ypt2091
|
G
|
|
ypt2093
|
G
|
|
ypt2094
|
G
|
|
ypt2095
|
S
|
|
ypt2098
|
G
|
|
ypt2102
|
S
|
|
ypt2103
|
C
|
|
ypt2105
|
G
|
|
ypt2107
|
C
|
|
ypt2109
|
G
|
|
ypt2115
|
G
|
|
ypt2117
|
G
|
|
ypt2119
|
G
|
|
ypt2126_L3_I053
|
C
|
|
ypt2144_L6_I055
|
G
|
|
ypt2164
|
G
|
|
ypt2165
|
C
|
|
ypt2166
|
G
|
|
ypt2171
|
G
|
|
ypt2172
|
G
|
|
ypt2174
|
G
|
|
ypt2175
|
C
|
|
ypt2177
|
G
|
|
ypt217_L2_I024
|
G
|
|
ypt2185
|
G
|
|
ypt2186
|
G
|
|
ypt2187
|
S
|
|
ypt2189
|
C
|
|
ypt2190
|
G
|
|
ypt2191
|
C
|
|
ypt2201
|
G
|
|
ypt2209
|
G
|
|
ypt220_L2_I026
|
G
|
|
ypt2217
|
C
|
|
ypt221_L3_I042
|
C
|
|
ypt2220
|
C
|
|
ypt2437
|
G
|
|
ypt2438
|
G
|
|
ypt2439
|
C
|
|
ypt2444
|
C
|
|
ypt2498
|
G
|
|
ypt2499
|
C
|
|
ypt2500
|
G
|
|
ypt2503
|
C
|
|
ypt2504
|
G
|
|
ypt2507
|
G
|
|
ypt2516
|
G
|
|
ypt2523
|
C
|
|
ypt2543
|
G
|
|
ypt2545
|
S
|
|
ypt2547
|
G
|
|
ypt2552
|
G
|
|
ypt2570
|
C
|
|
ypt2575
|
S
|
|
ypt2606
|
S
|
|
ypt2608
|
G
|
|
ypt2622
|
G
|
|
ypt2623
|
G
|
|
ypt2624
|
G
|
|
ypt2627
|
S
|
|
ypt2628
|
G
|
|
ypt263_L3_I031
|
G
|
|
ypt2643
|
G
|
|
ypt2644
|
G
|
|
ypt2646
|
C
|
|
ypt2650
|
G
|
|
ypt2656
|
G
|
|
ypt2657
|
S
|
|
ypt2661
|
G
|
|
ypt2664
|
C
|
|
ypt2670
|
C
|
|
ypt2672
|
G
|
|
ypt2678
|
G
|
|
ypt2706
|
C
|
|
ypt2722
|
G
|
|
ypt2724
|
G
|
|
ypt2729
|
G
|
|
ypt2766
|
C
|
|
ypt2775
|
G
|
|
ypt2780
|
G
|
|
ypt2782
|
C
|
|
ypt2783
|
G
|
|
ypt2784
|
G
|
|
ypt2786
|
G
|
|
ypt2788
|
S
|
|
ypt2789
|
G
|
|
ypt2790
|
G
|
|
ypt2791
|
C
|
|
ypt2812
|
C
|
|
ypt2817
|
G
|
|
ypt2825
|
G
|
|
ypt2826
|
C
|
|
ypt2827
|
G
|
|
ypt2831
|
G
|
|
ypt2832
|
G
|
|
ypt2842
|
G
|
|
ypt2843
|
G
|
|
ypt2849
|
G
|
|
ypt2892
|
G
|
|
ypt2895_L3_I026
|
G
|
|
ypt2909
|
S
|
|
ypt2911
|
G
|
|
ypt2918
|
G
|
|
ypt2930
|
G
|
|
ypt3002
|
G
|
|
ypt3003
|
G
|
|
ypt3004
|
G
|
|
ypt3006
|
G
|
|
ypt3009
|
G
|
|
ypt3010
|
G
|
|
ypt3012
|
C
|
|
ypt3016
|
G
|
|
ypt3017
|
G
|
|
ypt3028
|
G
|
|
ypt3041
|
G
|
|
ypt3042
|
G
|
|
ypt3043
|
C
|
|
ypt3044
|
S
|
|
ypt3045
|
G
|
|
ypt3050
|
C
|
|
ypt3051
|
G
|
|
ypt3052
|
G
|
|
ypt3134
|
C
|
|
ypt3135
|
G
|
|
ypt3136
|
G
|
|
ypt3137
|
C
|
|
ypt3141
|
G
|
|
ypt3150_L8_I023
|
G
|
|
ypt3159_L6_I035
|
S
|
|
ypt3160_L8_I024
|
G
|
|
ypt3179_L8_I025
|
C
|
|
ypt3181_L7_I038
|
G
|
|
ypt3182_L1_I039
|
G
|
|
ypt3189_L1_I040
|
G
|
|
ypt3190_L8_I026
|
C
|
|
ypt3191_L2_I041
|
G
|
|
ypt3193_L1_I027
|
C
|
|
ypt3196_L2_I043
|
C
|
|
ypt3197_L1_I044
|
S
|
|
ypt3205_L2_I047
|
C
|
|
ypt3210_L6_I051
|
G
|
|
ypt3211_L6_I052
|
C
|
|
ypt3212_L4_I028
|
S
|
|
ypt3213_L8_I029
|
G
|
|
ypt3219_L1_I030
|
C
|
|
ypt3221_L1_I032
|
G
|
|
ypt3222_L1_I033
|
G
|
|
ypt3228-7_L1_I034
|
C
|
|
ypt3239_L1_I035
|
G
|
|
ypt3246_L6_I050
|
G
|
|
ypt3260_L6_I003
|
G
|
|
ypt3262_L7_I005
|
S
|
|
ypt3269_L7_I006
|
C
|
|
ypt3272_L7_I010
|
S
|
|
ypt47_L2_I029
|
G
|
|
ypt50_L2_I030
|
C
|
|
ypt896_L2_I047
|
C
|
|
ypt897_L3_I048
|
G
|
|
ypt903_L2_I054
|
C
|
|
ypt907_L6_I002
|
C
|
|
ypt909_L5_I004
|
C
|
|
ypt932
|
G
|
|
ypt941_L5_I027
|
G
|
|
ypt942_L7_I028
|
G
|
|
ypt944_L3_I030
|
G
|
|
ypt948_L2_I034
|
G
|
|
ypt953
|
C
|
|
ypt958
|
G
|
|
ypt961
|
G
|
|
ypt963
|
G
|
