ChickenSD
Detail information of ggaS0009001280327
1.General Information
| SNP ID: |
ggaS0009001280327 |
| Organism: |
Gallus gallus |
| Individual: |
108S_L6_I032 |
2.Allele information
| Platform: |
SOLEXA |
| Method: |
sequence |
| SNP Class: |
SNP |
| Genotype: |
G |
3.Reference Map information
| Chrom |
Position |
Reference |
108S_L6_I032
|
| chr13
|
34
|
C
|
G
|
4.Gene information
| Var ID |
Gene ID |
Transcript ID |
Gene Symbol |
Variant Effect |
Biotype |
cDNA Position |
Allele Change |
Protein ID |
Protein Position |
Residue Change |
| ggaS0009001280327 |
-
|
|
|
intergenic_variant |
|
|
=>
|
|
|
=>
|
5.Individual Genotype
| Individual |
Genotype |
|
100S
|
G
|
|
102S_L3_I037
|
G
|
|
103S
|
G
|
|
104S_L7_I029
|
G
|
|
106S_L6_I030
|
G
|
|
107S_L2_I031
|
G
|
|
111S_L3_I047
|
G
|
|
113S_L1_I036
|
G
|
|
114S_L3_I037
|
G
|
|
116S_L6_I038
|
G
|
|
118S_L4_I040
|
G
|
|
120S_L1_I041
|
G
|
|
121S_L3_I042
|
G
|
|
124S_L2_I048
|
G
|
|
125S_L3_I050
|
G
|
|
126S_L3_I051
|
G
|
|
127S_L2_I045
|
G
|
|
129S_L3_I043
|
G
|
|
12S_L4_I011
|
G
|
|
130S_L4_I044
|
G
|
|
131S_L2_I045
|
G
|
|
132S_L2_I046
|
G
|
|
133S_L8_I046
|
G
|
|
134S_L2_I047
|
G
|
|
13S_L7_I012
|
G
|
|
14S_L2_I021
|
G
|
|
16S_L5_I023
|
G
|
|
18833
|
G
|
|
19297
|
G
|
|
20736
|
G
|
|
23S_L2_I030
|
G
|
|
24S_L4_I031
|
G
|
|
25S_L3_I032
|
G
|
|
27S_L4_I034
|
G
|
|
28S_L4_I035
|
G
|
|
35S_L5_I041
|
G
|
|
36S_L5_I042
|
G
|
|
37S_L2_I043
|
G
|
|
3S_L4_I003
|
G
|
|
43S
|
G
|
|
44S_L4_I001
|
G
|
|
45S_L2_I002
|
G
|
|
46S_L4_I003
|
G
|
|
48S_L1_I004
|
G
|
|
49S_L1_I005
|
G
|
|
4S_L4_I004
|
G
|
|
50S_L1_I047
|
G
|
|
51S_L6_I048
|
G
|
|
52S_L2_I050
|
G
|
|
53S_L2_I006
|
G
|
|
54S_L2_I007
|
G
|
|
55S_L1_I008
|
G
|
|
56S_L1_I010
|
G
|
|
5S
|
G
|
|
60S_L5_I053
|
G
|
|
61S_L8_I054
|
G
|
|
62S_L8_I055
|
G
|
|
63S_L5_I056
|
G
|
|
65S_L5_I002
|
G
|
|
66S_L2_I003
|
G
|
|
67S_L1_I011
|
G
|
|
68S_L3_I012
|
G
|
|
69S
|
G
|
|
6S
|
G
|
|
70S
|
G
|
|
71S_L3_I023
|
G
|
|
72S_L1_I024
|
G
|
|
74S_L4_I026
|
G
|
|
75S_L3_I027
|
G
|
|
77S_L4_I029
|
G
|
|
78S_L4_I030
|
G
|
|
79S_L2_I031
|
G
|
|
7S_L4_I007
|
G
|
|
81S_L1_I005
|
G
|
|
82S
|
G
|
|
83S_L3_I033
|
G
|
|
84S_L5_I006
|
G
|
|
85S_L5_I007
|
G
|
|
87S_L5_I010
|
G
|
|
89S_L6_I012
|
G
|
|
92S_L5_I023
|
G
|
|
93S_L7_I024
|
G
|
|
95S_L8_I025
|
G
|
|
96S_L4_I026
|
G
|
|
98S_L3_I034
|
G
|
|
99S_L2_I035
|
G
|
|
9S
|
G
|
|
A1
|
G
|
|
A12
|
G
|
|
A3
|
G
|
|
A8
|
G
|
|
BLB1_L2_I007
|
G
|
|
BLB2_L2_I008
|
G
|
|
BLO1
|
G
|
|
BLO11
|
G
|
|
BLO2
|
G
|
|
BLO3_L4_I022
|
G
|
|
BOJA2
|
G
|
|
BYW5_L2_I010
|
G
|
|
GVF
|
G
|
|
India1
|
G
|
|
India11
|
G
|
|
India15
|
G
|
|
India19
|
G
|
|
India23
|
G
|
|
India31
|
G
|
|
India33
|
G
|
|
India37
|
G
|
|
India39
|
G
|
|
India43
|
G
|
|
India5
|
G
|
|
India51
|
G
|
|
India61
|
G
|
|
India9
|
G
|
|
L2
|
G
|
|
N13
|
G
|
|
N18
|
G
|
|
N3
|
G
|
|
N7
|
G
|
|
N8
|
G
|
|
S-f1_L4_I106
|
G
|
|
S-f2_I107
|
G
|
|
S-f3_I108
|
G
|
|
S-f4_L4_I109
|
G
|
|
S-m1_I101
|
G
|
|
S-m4_L2_I104
|
G
|
|
S6
|
G
|
|
SAMN02486156
|
G
|
|
SAMN02486157
|
G
|
|
SAMN02486161
|
G
|
|
SAMN02486163
|
G
|
|
SAMN02486165
|
G
|
|
SAMN02486166
|
G
|
|
SAMN02486167
|
G
|
|
Silkia
|
G
|
|
T2
|
G
|
|
T3
|
G
|
|
TD1
|
G
|
|
TD12
|
G
|
|
TD15
|
G
|
|
TD22
|
G
|
|
TD6
|
G
|
|
TD9
|
G
|
|
Tibet
|
G
|
|
Xcelris_105
|
G
|
|
Xcelris_10A
|
G
|
|
Xcelris_10B
|
G
|
|
Xcelris_112
|
G
|
|
Xcelris_113
|
G
|
|
Xcelris_120
|
G
|
|
Xcelris_128
|
G
|
|
Xcelris_12A
|
G
|
|
Xcelris_13
|
G
|
|
Xcelris_13B
|
G
|
|
Xcelris_14
|
G
|
|
Xcelris_14A
|
G
|
|
Xcelris_1A
|
G
|
|
Xcelris_219
|
G
|
|
Xcelris_224
|
G
|
|
Xcelris_226
|
G
|
|
Xcelris_332
|
G
|
|
Xcelris_333
|
G
|
|
Xcelris_335
|
G
|
|
Xcelris_340
|
G
|
|
Xcelris_341
|
G
|
|
Xcelris_379
|
G
|
|
Xcelris_382
|
G
|
|
Xcelris_392
|
G
|
|
Xcelris_4A
|
G
|
|
Xcelris_4B
|
G
|
|
Xcelris_6A
|
G
|
|
Xcelris_7
|
G
|
|
Xcelris_90
|
G
|
|
Xcelris_97
|
S
|
|
Y1-f2_L6_I121
|
G
|
|
Y1-m3_L7_I123
|
G
|
|
Y1-m4_I124
|
G
|
|
YPt565
|
G
|
|
YPt601
|
G
|
|
YPt604
|
G
|
|
YPt637
|
G
|
|
YPt641
|
G
|
|
YPt648
|
G
|
|
You1
|
G
|
|
Ypt566
|
G
|
|
Ypt568
|
G
|
|
Ypt569
|
G
|
|
Ypt570
|
G
|
|
Ypt572
|
G
|
|
Ypt573
|
G
|
|
Ypt575
|
G
|
|
Ypt576
|
G
|
|
Ypt577
|
G
|
|
Ypt579
|
G
|
|
Ypt581
|
G
|
|
Ypt582
|
G
|
|
Ypt583
|
G
|
|
Ypt585
|
G
|
|
Ypt586
|
G
|
|
Ypt588
|
G
|
|
Ypt589
|
G
|
|
Ypt591
|
G
|
|
Ypt592
|
G
|
|
Ypt593
|
G
|
|
Ypt594
|
G
|
|
Ypt595
|
G
|
|
Ypt596
|
G
|
|
Ypt598
|
G
|
|
Ypt599
|
G
|
|
Ypt600
|
G
|
|
Ypt608
|
G
|
|
Ypt623
|
G
|
|
Ypt624
|
G
|
|
Ypt626
|
G
|
|
Ypt638
|
G
|
|
Ypt640
|
G
|
|
Ypt645
|
G
|
|
Yt516
|
G
|
|
Yt517
|
G
|
|
Yt518
|
G
|
|
Yt519
|
G
|
|
Yt520
|
G
|
|
Yt521
|
G
|
|
Yt522
|
G
|
|
Yt523
|
G
|
|
Yt524
|
G
|
|
Yt525
|
G
|
|
Yt526
|
G
|
|
Yt527
|
G
|
|
Yt528
|
G
|
|
Yt530
|
G
|
|
Yt531
|
G
|
|
Yt536
|
G
|
|
Yt538
|
G
|
|
Yt539
|
G
|
|
Yt540
|
G
|
|
ZJ2
|
G
|
|
ZJ4
|
G
|
|
india3
|
G
|
|
production
|
G
|
|
ypt169_L3_I011
|
G
|
|
ypt171_L2_I021
|
G
|
|
ypt173_L2_I022
|
G
|
|
ypt175_L2_I023
|
G
|
|
ypt2041_L6_I002
|
G
|
|
ypt2051_L3_I003
|
G
|
|
ypt2069_L6_I006
|
G
|
|
ypt2082
|
G
|
|
ypt2086
|
G
|
|
ypt2092
|
G
|
|
ypt2094
|
G
|
|
ypt2098
|
G
|
|
ypt2100
|
G
|
|
ypt2103
|
G
|
|
ypt2107
|
G
|
|
ypt2108
|
G
|
|
ypt2109
|
G
|
|
ypt2110
|
G
|
|
ypt2112
|
G
|
|
ypt2114
|
G
|
|
ypt2115
|
G
|
|
ypt2116
|
G
|
|
ypt2124_L4_I052
|
G
|
|
ypt2128_L6_I054
|
G
|
|
ypt2164
|
G
|
|
ypt2165
|
G
|
|
ypt2166
|
G
|
|
ypt2167
|
G
|
|
ypt2168
|
G
|
|
ypt2176
|
G
|
|
ypt2177
|
G
|
|
ypt2178
|
G
|
|
ypt2184
|
G
|
|
ypt2185
|
G
|
|
ypt2186
|
G
|
|
ypt2189
|
G
|
|
ypt2191
|
G
|
|
ypt219_L3_I025
|
G
|
|
ypt2201
|
G
|
|
ypt2209
|
G
|
|
ypt220_L2_I026
|
G
|
|
ypt2214
|
G
|
|
ypt2215
|
G
|
|
ypt2217
|
G
|
|
ypt2218
|
G
|
|
ypt221_L3_I042
|
G
|
|
ypt2221
|
G
|
|
ypt2222
|
G
|
|
ypt222_L3_I027
|
G
|
|
ypt2438
|
G
|
|
ypt2439
|
G
|
|
ypt2440
|
G
|
|
ypt2444
|
G
|
|
ypt2446
|
G
|
|
ypt2447
|
G
|
|
ypt2448
|
G
|
|
ypt2454
|
G
|
|
ypt2496
|
G
|
|
ypt2497
|
G
|
|
ypt2500
|
G
|
|
ypt2503
|
G
|
|
ypt2504
|
G
|
|
ypt2507
|
G
|
|
ypt2516
|
G
|
|
ypt2521
|
G
|
|
ypt2523
|
G
|
|
ypt2534
|
G
|
|
ypt2541
|
G
|
|
ypt2543
|
G
|
|
ypt2544
|
G
|
|
ypt2546
|
G
|
|
ypt2547
|
G
|
|
ypt2562
|
G
|
|
ypt2569
|
G
|
|
ypt2571
|
G
|
|
ypt2575
|
G
|
|
ypt259_L2_I029
|
G
|
|
ypt2601
|
G
|
|
ypt2606
|
G
|
|
ypt2615
|
G
|
|
ypt2622
|
G
|
|
ypt262_L3_I030
|
G
|
|
ypt2630
|
G
|
|
ypt2636
|
G
|
|
ypt2640
|
G
|
|
ypt2646
|
G
|
|
ypt264_L3_I032
|
G
|
|
ypt2650
|
G
|
|
ypt2653
|
G
|
|
ypt2657
|
G
|
|
ypt2658
|
G
|
|
ypt2661
|
G
|
|
ypt2664
|
G
|
|
ypt2665
|
G
|
|
ypt2669
|
G
|
|
ypt2670
|
G
|
|
ypt2671
|
G
|
|
ypt2672
|
G
|
|
ypt2673
|
G
|
|
ypt2724
|
G
|
|
ypt2729
|
G
|
|
ypt2733
|
G
|
|
ypt2739
|
G
|
|
ypt2740
|
G
|
|
ypt2746
|
G
|
|
ypt2760
|
G
|
|
ypt2761
|
G
|
|
ypt2765
|
G
|
|
ypt2766
|
G
|
|
ypt2775
|
G
|
|
ypt2780
|
G
|
|
ypt2781
|
G
|
|
ypt2782
|
G
|
|
ypt2784
|
G
|
|
ypt2785
|
G
|
|
ypt2787
|
G
|
|
ypt2788
|
G
|
|
ypt2789
|
G
|
|
ypt2790
|
G
|
|
ypt2792
|
G
|
|
ypt2799
|
G
|
|
ypt2800
|
G
|
|
ypt2808
|
G
|
|
ypt2810
|
G
|
|
ypt2813
|
G
|
|
ypt2815
|
G
|
|
ypt2819
|
G
|
|
ypt2821
|
G
|
|
ypt2822
|
G
|
|
ypt2823
|
G
|
|
ypt2825
|
G
|
|
ypt2826
|
G
|
|
ypt2827
|
G
|
|
ypt2828
|
G
|
|
ypt2832
|
G
|
|
ypt2843
|
G
|
|
ypt2849
|
G
|
|
ypt2860
|
G
|
|
ypt2861
|
G
|
|
ypt2862
|
G
|
|
ypt2863
|
G
|
|
ypt2871
|
G
|
|
ypt2887
|
G
|
|
ypt2888
|
G
|
|
ypt2890_L3_I040
|
G
|
|
ypt2891_L3_I041
|
G
|
|
ypt2892
|
G
|
|
ypt2893_L3_I025
|
G
|
|
ypt2895_L3_I026
|
G
|
|
ypt2909
|
G
|
|
ypt2911
|
G
|
|
ypt2930
|
G
|
|
ypt3001
|
G
|
|
ypt3003
|
G
|
|
ypt3004
|
G
|
|
ypt3006
|
G
|
|
ypt3009
|
G
|
|
ypt3010
|
G
|
|
ypt3017
|
G
|
|
ypt3038
|
G
|
|
ypt3040
|
G
|
|
ypt3043
|
G
|
|
ypt3044
|
G
|
|
ypt3045
|
G
|
|
ypt3047
|
G
|
|
ypt3050
|
G
|
|
ypt3051
|
G
|
|
ypt3052
|
G
|
|
ypt3061
|
G
|
|
ypt3069
|
G
|
|
ypt3072
|
G
|
|
ypt3135
|
G
|
|
ypt3137
|
G
|
|
ypt3138
|
G
|
|
ypt3139
|
G
|
|
ypt3143
|
G
|
|
ypt3145
|
G
|
|
ypt3149_L2_I034
|
G
|
|
ypt3150_L8_I023
|
G
|
|
ypt3159_L6_I035
|
G
|
|
ypt3160_L8_I024
|
G
|
|
ypt3162_L6_I036
|
G
|
|
ypt3179_L8_I025
|
G
|
|
ypt3181_L7_I038
|
G
|
|
ypt3182_L1_I039
|
G
|
|
ypt3189_L1_I040
|
G
|
|
ypt3190_L8_I026
|
G
|
|
ypt3195_L1_I042
|
G
|
|
ypt3196_L2_I043
|
G
|
|
ypt3197_L1_I044
|
G
|
|
ypt3206_L1_I048
|
G
|
|
ypt3207_L6_I050
|
G
|
|
ypt3210_L6_I051
|
G
|
|
ypt3211_L6_I052
|
G
|
|
ypt3212_L4_I028
|
G
|
|
ypt3221_L1_I032
|
G
|
|
ypt3224_L8_I043
|
G
|
|
ypt3226_L3_I044
|
G
|
|
ypt3228-7_L1_I034
|
G
|
|
ypt3238_L3_I046
|
G
|
|
ypt3239_L1_I035
|
G
|
|
ypt3246_L6_I050
|
G
|
|
ypt3260_L6_I003
|
G
|
|
ypt3262_L7_I005
|
G
|
|
ypt3271_L7_I008
|
G
|
|
ypt3272_L7_I010
|
G
|
|
ypt55_L1_I033
|
G
|
|
ypt890
|
G
|
|
ypt891
|
G
|
|
ypt898
|
G
|
|
ypt899_L6_I051
|
G
|
|
ypt903_L2_I054
|
G
|
|
ypt906_L3_I001
|
G
|
|
ypt910_L3_I005
|
G
|
|
ypt913
|
G
|
|
ypt915
|
G
|
|
ypt920_L5_I010
|
G
|
|
ypt922_L4_I012
|
G
|
|
ypt929
|
G
|
|
ypt930
|
S
|
|
ypt942_L7_I028
|
G
|
|
ypt946_L4_I032
|
G
|
|
ypt947_L5_I033
|
G
|
|
ypt949_L3_I035
|
G
|
|
ypt950_L5_I036
|
G
|
|
ypt951
|
G
|
|
ypt954
|
G
|
|
ypt955
|
G
|
|
ypt956x
|
G
|
|
ypt957
|
G
|
|
ypt959
|
G
|
|
ypt961
|
G
|
|
ypt962
|
G
|
|
ypt963
|
G
|
|
ypt965
|
G
|
|
ypt966
|
G
|
|
ypt972x
|
G
|
|
ypt973_L4_I037
|
G
|
|
ypt974
|
G
|
|
ypt976_L7_I040
|
G
|
|
ypt978_L2_I052
|
G
|
|
ypt979_L6_I042
|
G
|
|
ypt980_L3_I043
|
G
|
|
ypt982_L4_I045
|
G
|
|
ypt984
|
G
|
|
147209
|
G
|
|
147830
|
G
|
|
Gallus_Sonneriatii_d
|
G
|
|
Ypt4000
|
G
|
|
Ypt4879
|
G
|
|
Ypt4880
|
G
|
