ChickenSD
Detail information of ggaS0007003070529
1.General Information
SNP ID: |
ggaS0007003070529 |
Organism: |
Gallus gallus |
Individual: |
106S_L6_I030 |
2.Allele information
Platform: |
SOLEXA |
Method: |
sequence |
SNP Class: |
SNP |
Genotype: |
C |
3.Reference Map information
Chrom |
Position |
Reference |
106S_L6_I030
|
chr4
|
886
|
G
|
C
|
4.Gene information
Var ID |
Gene ID |
Transcript ID |
Gene Symbol |
Variant Effect |
Biotype |
cDNA Position |
Allele Change |
Protein ID |
Protein Position |
Residue Change |
ggaS0007003070529 |
-
|
|
|
intergenic_variant |
|
|
=>
|
|
|
=>
|
5.Individual Genotype
Individual |
Genotype |
101S_L1_I028
|
C
|
102S_L3_I037
|
C
|
105S_L3_I039
|
C
|
108S_L6_I032
|
C
|
10S_L1_I052
|
C
|
110S_L4_I034
|
G
|
112S_L3_I035
|
C
|
113S_L1_I036
|
C
|
117S_L2_I039
|
C
|
119S_L3_I041
|
C
|
11S
|
C
|
121S_L3_I042
|
C
|
125S_L3_I050
|
C
|
126S_L3_I051
|
C
|
129S_L3_I043
|
C
|
130S_L4_I044
|
C
|
133S_L8_I046
|
C
|
134S_L2_I047
|
C
|
135S_L3_I048
|
C
|
13S_L7_I012
|
C
|
15S_L6_I022
|
C
|
16S_L5_I023
|
C
|
17S_L3_I024
|
C
|
19S_L4_I026
|
C
|
20736
|
C
|
23S_L2_I030
|
C
|
25S_L3_I032
|
C
|
28S_L4_I035
|
C
|
2S
|
C
|
32S_L1_I039
|
C
|
36S_L5_I042
|
C
|
37S_L2_I043
|
C
|
38S_L6_I044
|
C
|
39S_L6_I053
|
C
|
40S_L2_I054
|
C
|
42S_L3_I055
|
G
|
47S_L3_I046
|
C
|
49S_L1_I005
|
C
|
50S_L1_I047
|
C
|
55S_L1_I008
|
C
|
56S_L1_I010
|
C
|
57S_L3_I046
|
C
|
5S
|
C
|
60S_L5_I053
|
G
|
61S_L8_I054
|
C
|
62S_L8_I055
|
C
|
63S_L5_I056
|
C
|
64S_L4_I001
|
C
|
65S_L5_I002
|
C
|
69S
|
C
|
6S
|
G
|
70S
|
C
|
72S_L1_I024
|
C
|
75S_L3_I027
|
C
|
77S_L4_I029
|
C
|
80S_L3_I004
|
C
|
81S_L1_I005
|
C
|
83S_L3_I033
|
C
|
87S_L5_I010
|
C
|
89S_L6_I012
|
C
|
90S_L4_I021
|
C
|
91S_L4_I022
|
C
|
92S_L5_I023
|
C
|
95S_L8_I025
|
C
|
96S_L4_I026
|
C
|
97S_L8_I027
|
C
|
98S_L3_I034
|
C
|
A12
|
C
|
BLO1
|
C
|
India1
|
C
|
India11
|
C
|
India13
|
C
|
India15
|
C
|
India17
|
C
|
India19
|
C
|
India21
|
C
|
India23
|
C
|
India47
|
C
|
India5
|
C
|
India57
|
C
|
N13
|
C
|
N18
|
C
|
N3
|
G
|
S-f3_I108
|
C
|
S6
|
G
|
Silkia
|
C
|
TD22
|
C
|
TD27
|
C
|
TD30
|
C
|
TD6
|
C
|
TD9
|
C
|
Tibet
|
C
|
Xcelris_101
|
G
|
Xcelris_10B
|
C
|
Xcelris_13
|
C
|
Xcelris_137
|
G
|
Xcelris_13B
|
C
|
Xcelris_14B
|
G
|
Xcelris_219
|
S
|
Xcelris_275
|
C
|
Xcelris_280
|
G
|
Xcelris_2A
|
C
|
Xcelris_2B
|
C
|
Xcelris_333
|
C
|
Xcelris_382
|
C
|
Xcelris_44
|
C
|
Xcelris_5
|
G
|
Y1-f1_L5_I119
|
C
|
Y1-m2_L4_I122
|
C
|
Y1-m3_L7_I123
|
C
|
Y1-m4_I124
|
C
|
Y1-m5_L7_I102
|
C
|
YPt565
|
C
|
YPt604
|
C
|
You1
|
C
|
You3_L7_I1000005
|
C
|
Ypt582
|
C
|
Ypt585
|
C
|
Ypt607
|
C
|
Ypt622
|
C
|
Ypt640
|
C
|
Yt517
|
C
|
Yt523
|
C
|
Yt525
|
C
|
Yt527
|
C
|
Yt529
|
C
|
Yt530
|
C
|
Yt538
|
C
|
ZJ1
|
C
|
ypt173_L2_I022
|
C
|
ypt2043_L1_I037
|
C
|
ypt2051_L3_I003
|
C
|
ypt2069_L6_I006
|
C
|
ypt2082
|
C
|
ypt2087
|
C
|
ypt2092
|
C
|
ypt2095
|
C
|
ypt2098
|
C
|
ypt2100
|
C
|
ypt2102
|
C
|
ypt2103
|
C
|
ypt2107
|
C
|
ypt2108
|
C
|
ypt2109
|
C
|
ypt2116
|
C
|
ypt2120
|
C
|
ypt2122
|
C
|
ypt2124_L4_I052
|
C
|
ypt2126_L3_I053
|
C
|
ypt2128_L6_I054
|
C
|
ypt2144_L6_I055
|
C
|
ypt2167
|
C
|
ypt2168
|
C
|
ypt2170
|
C
|
ypt2171
|
C
|
ypt2172
|
C
|
ypt2174
|
C
|
ypt2175
|
C
|
ypt2176
|
C
|
ypt2178
|
C
|
ypt2185
|
C
|
ypt2189
|
C
|
ypt2190
|
C
|
ypt2200
|
C
|
ypt220_L2_I026
|
C
|
ypt2214
|
S
|
ypt2219
|
C
|
ypt2220
|
C
|
ypt2221
|
C
|
ypt2437
|
C
|
ypt2438
|
C
|
ypt2440
|
C
|
ypt2442
|
C
|
ypt2443
|
G
|
ypt2445
|
C
|
ypt2446
|
C
|
ypt2449
|
C
|
ypt2459
|
C
|
ypt2468
|
C
|
ypt2497
|
C
|
ypt2503
|
C
|
ypt2504
|
C
|
ypt2516
|
C
|
ypt2523
|
C
|
ypt2543
|
C
|
ypt2544
|
C
|
ypt2545
|
C
|
ypt2546
|
C
|
ypt2552
|
C
|
ypt2562
|
C
|
ypt2563
|
C
|
ypt2573
|
C
|
ypt2575
|
C
|
ypt259_L2_I029
|
C
|
ypt2606
|
C
|
ypt2622
|
C
|
ypt2624
|
C
|
ypt2628
|
C
|
ypt2630
|
C
|
ypt2636
|
C
|
ypt2638
|
C
|
ypt263_L3_I031
|
C
|
ypt2641
|
C
|
ypt2644
|
G
|
ypt2656
|
C
|
ypt2658
|
C
|
ypt2664
|
C
|
ypt2672
|
C
|
ypt2673
|
C
|
ypt2678
|
C
|
ypt2724
|
C
|
ypt2729
|
G
|
ypt2733
|
C
|
ypt2739
|
C
|
ypt2740
|
C
|
ypt2745
|
C
|
ypt2746
|
C
|
ypt2766
|
C
|
ypt2775
|
G
|
ypt2780
|
C
|
ypt2782
|
C
|
ypt2785
|
C
|
ypt2787
|
C
|
ypt2791
|
C
|
ypt2792
|
C
|
ypt2800
|
C
|
ypt2813
|
C
|
ypt2815
|
C
|
ypt2816
|
C
|
ypt2817
|
C
|
ypt2819
|
C
|
ypt2822
|
C
|
ypt2823
|
C
|
ypt2824
|
C
|
ypt2825
|
C
|
ypt2832
|
C
|
ypt2862
|
C
|
ypt2892
|
C
|
ypt2893_L3_I025
|
C
|
ypt2894
|
C
|
ypt2895_L3_I026
|
C
|
ypt2902
|
C
|
ypt2909
|
C
|
ypt2910
|
C
|
ypt2911
|
C
|
ypt3008
|
C
|
ypt3009
|
C
|
ypt3012
|
C
|
ypt3043
|
C
|
ypt3044
|
C
|
ypt3045
|
G
|
ypt3061
|
C
|
ypt3137
|
G
|
ypt3160_L8_I024
|
C
|
ypt3190_L8_I026
|
C
|
ypt3191_L2_I041
|
C
|
ypt3193_L1_I027
|
C
|
ypt3195_L1_I042
|
C
|
ypt3196_L2_I043
|
C
|
ypt3197_L1_I044
|
C
|
ypt3204_L7_I046
|
G
|
ypt3210_L6_I051
|
C
|
ypt3228-7_L1_I034
|
C
|
ypt3229_L8_I045
|
G
|
ypt3238_L3_I046
|
C
|
ypt3247_L6_I051
|
G
|
ypt3262_L7_I005
|
S
|
ypt3275_L1_I012
|
C
|
ypt3289_L8_I021
|
G
|
ypt47_L2_I029
|
C
|
ypt50_L2_I030
|
C
|
ypt890
|
C
|
ypt906_L3_I001
|
C
|
ypt912
|
C
|
ypt916
|
G
|
ypt941_L5_I027
|
C
|
ypt945_L4_I031
|
C
|
ypt946_L4_I032
|
C
|
ypt947_L5_I033
|
C
|
ypt948_L2_I034
|
C
|
ypt949_L3_I035
|
C
|
ypt951
|
C
|
ypt957
|
C
|
ypt958
|
C
|
ypt979_L6_I042
|
C
|
ypt982_L4_I045
|
C
|